Wall clock time and date at job start Mon Mar 30 2020 06:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 H 1.09004 * 109.47519 * 54.99951 * 3 2 1 5 5 C 1.53004 * 109.47193 * 295.00079 * 3 2 1 6 6 C 1.50703 * 109.47109 * 175.00316 * 3 2 1 7 7 C 1.38234 * 119.99685 * 240.00030 * 6 3 2 8 8 C 1.38236 * 119.99724 * 180.02562 * 7 6 3 9 9 C 1.38237 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.50692 * 120.00323 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.47136 * 90.00359 * 10 9 8 12 12 C 1.46498 * 119.99959 * 89.99703 * 11 10 9 13 13 C 1.36937 * 119.99912 * 270.28035 * 11 10 9 14 14 H 1.07995 * 120.00153 * 22.85725 * 13 11 10 15 15 C 1.38814 * 119.99543 * 202.85713 * 13 11 10 16 16 N 1.31617 * 120.00504 * 13.17735 * 15 13 11 17 17 Si 1.86802 * 119.99653 * 193.17934 * 15 13 11 18 18 H 1.48501 * 109.47472 * 89.99970 * 17 15 13 19 19 H 1.48502 * 109.47058 * 209.99981 * 17 15 13 20 20 H 1.48498 * 109.47347 * 330.00149 * 17 15 13 21 21 C 1.38236 * 119.99804 * 0.26142 * 9 8 7 22 22 C 1.38233 * 119.99913 * 60.01747 * 6 3 2 23 23 H 1.09006 * 109.46959 * 299.99759 * 1 2 3 24 24 H 1.08997 * 109.47339 * 59.99977 * 1 2 3 25 25 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47051 * 240.00484 * 2 1 3 27 27 H 1.08997 * 109.47339 * 120.00023 * 2 1 3 28 28 H 1.08996 * 109.47010 * 180.02562 * 5 3 2 29 29 H 1.08995 * 109.46910 * 300.00100 * 5 3 2 30 30 H 1.08997 * 109.46863 * 60.00383 * 5 3 2 31 31 H 1.07997 * 120.00327 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00268 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47283 * 330.00737 * 10 9 8 34 34 H 1.09001 * 109.47591 * 210.00191 * 10 9 8 35 35 H 1.08998 * 109.47062 * 95.13769 * 12 11 10 36 36 H 1.09004 * 109.47500 * 215.13848 * 12 11 10 37 37 H 1.08999 * 109.47060 * 335.13870 * 12 11 10 38 38 H 0.97001 * 120.00266 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.00384 * 179.72933 * 21 9 8 40 40 H 1.07997 * 120.00296 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0758 1.3092 9 6 6.2973 1.4483 0.3506 10 6 7.7991 1.4512 0.4737 11 7 8.2288 0.2767 1.2369 12 6 8.5330 -0.9769 0.5425 13 6 8.3404 0.3491 2.5997 14 1 7.7869 1.0971 3.1479 15 6 9.1651 -0.5390 3.2766 16 7 10.0309 -1.2722 2.6096 17 14 9.0458 -0.6935 5.1344 18 1 8.0508 -1.7399 5.4813 19 1 10.3723 -1.0695 5.6860 20 1 8.6195 0.6060 5.7129 21 6 5.6931 0.8232 -0.7242 22 6 4.3151 0.8171 -0.8351 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9988 3.1541 -1.3075 29 1 2.0697 1.5876 -2.1491 30 1 0.5488 2.1253 -1.3968 31 1 3.5421 2.5643 1.9447 32 1 5.9961 2.5678 2.1467 33 1 8.1197 2.3565 0.9891 34 1 8.2453 1.4216 -0.5204 35 1 9.6044 -1.0354 0.3510 36 1 8.2284 -1.8194 1.1634 37 1 7.9926 -1.0086 -0.4035 38 1 10.6074 -1.8925 3.0827 39 1 6.2974 0.3367 -1.4755 40 1 3.8430 0.3261 -1.6732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258741850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:43 Heat of formation + Delta-G solvation = 23.810190 kcal Electronic energy + Delta-G solvation = -17813.845755 eV Core-core repulsion = 15207.312806 eV Total energy + Delta-G solvation = -2606.532949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.27314 -36.49479 -34.97455 -31.86673 -30.43612 -30.39476 -28.80019 -26.12117 -25.67568 -24.08765 -22.44909 -21.61624 -20.48093 -19.43081 -16.67080 -15.99867 -15.23042 -14.94048 -14.74624 -14.29616 -13.92352 -13.53329 -13.38189 -13.04771 -12.90687 -12.76547 -12.35112 -12.04475 -11.81690 -11.67542 -11.28740 -11.07988 -10.87589 -10.86134 -10.71248 -10.59376 -10.49576 -10.21555 -10.15000 -9.91081 -9.85477 -8.53007 -8.37724 -7.96799 -6.70649 -5.68451 -3.15156 1.90214 1.94817 3.40732 3.46980 3.47986 4.25588 4.57044 4.76869 4.84522 5.04806 5.29981 5.39724 5.44620 5.45574 5.47836 5.50494 5.62604 5.72970 5.79716 5.84917 5.88502 5.91855 6.00649 6.05950 6.11611 6.25109 6.32687 6.34780 6.57018 6.64323 6.71249 6.78844 7.00147 7.05817 7.35423 7.41219 7.57909 7.75480 7.84524 8.43149 9.27166 9.90190 10.39317 11.36334 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027942 B = 0.005172 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.851131 B = 5412.447940 C = 5766.331145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.047 4.047 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.080 4.080 10 C 0.181 3.819 11 N -0.594 5.594 12 C 0.163 3.837 13 C -0.252 4.252 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.113 4.113 22 C -0.119 4.119 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.039 0.961 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 5.065 -7.252 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.066 4.066 4 H 0.090 0.910 5 C -0.200 4.200 6 C -0.097 4.097 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.083 4.083 10 C 0.054 3.946 11 N -0.316 5.316 12 C 0.019 3.981 13 C -0.381 4.381 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.733 3.267 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.132 4.132 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.102 4.921 -7.184 17.433 hybrid contribution -0.032 -0.331 1.138 1.185 sum -15.135 4.590 -6.047 16.932 Atomic orbital electron populations 1.21836 0.96117 1.01390 1.01659 1.21587 0.95264 0.96124 1.02449 1.20092 0.91710 0.96305 0.98469 0.91000 1.21880 1.00648 1.00509 0.96978 1.19627 0.94438 0.99847 0.95820 1.20948 0.94821 1.00602 0.97623 1.21016 0.93136 0.99548 0.98444 1.21176 0.99500 0.94592 0.93065 1.19787 0.87429 0.91714 0.95666 1.43860 1.77707 1.06422 1.03562 1.20792 0.97738 0.87771 0.91808 1.19174 1.20527 1.16456 0.81958 0.91513 1.24988 0.96380 1.00370 0.97850 1.70070 1.22878 1.28216 1.34144 0.86272 0.76858 0.77950 0.85588 1.21560 1.21744 1.20478 1.20991 0.94179 0.99646 0.98391 1.20805 0.93692 1.00392 0.98791 0.92899 0.92622 0.92953 0.91898 0.91792 0.92752 0.92598 0.92634 0.87126 0.86528 0.92604 0.93685 0.95009 0.94242 0.98417 0.93805 0.86903 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C -0.12 -1.29 5.14 -26.73 -0.14 -1.43 16 3 C -0.05 -0.55 2.56 -91.77 -0.24 -0.79 16 4 H 0.07 0.80 7.88 -51.93 -0.41 0.40 16 5 C -0.14 -1.44 8.76 37.16 0.33 -1.11 16 6 C -0.10 -1.43 4.78 -104.62 -0.50 -1.93 16 7 C -0.12 -1.94 9.67 -39.58 -0.38 -2.32 16 8 C -0.10 -1.87 9.70 -39.58 -0.38 -2.25 16 9 C -0.08 -1.54 5.46 -104.63 -0.57 -2.11 16 10 C 0.18 3.85 5.77 -5.20 -0.03 3.82 16 11 N -0.59 -15.29 2.90 -182.51 -0.53 -15.82 16 12 C 0.16 4.14 8.98 59.85 0.54 4.68 16 13 C -0.25 -7.03 9.65 -15.06 -0.15 -7.18 16 14 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 15 C 0.00 0.06 5.09 -17.43 -0.09 -0.03 16 16 N -0.91 -26.94 10.73 55.49 0.60 -26.34 16 17 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.97 9.70 -39.58 -0.38 -2.35 16 22 C -0.12 -1.82 8.76 -39.58 -0.35 -2.16 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.56 7.39 -51.93 -0.38 0.18 16 30 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.11 1.52 7.95 -52.49 -0.42 1.11 16 32 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.06 1.17 7.98 -51.93 -0.41 0.76 16 34 H 0.04 0.89 8.01 -51.93 -0.42 0.47 16 35 H 0.03 0.86 7.35 -51.93 -0.38 0.48 16 36 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 37 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.11 1.45 7.16 -52.49 -0.38 1.07 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -30.03 322.89 -8.84 -38.86 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.76 Total: -2.66 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.98 Total: -16.17 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.07 Total: -42.16 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.03 -8.84 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258741850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.674 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds