Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 H 1.09004 * 109.47519 * 54.99951 * 3 2 1 5 5 C 1.53004 * 109.47193 * 295.00079 * 3 2 1 6 6 C 1.50703 * 109.47109 * 175.00316 * 3 2 1 7 7 C 1.38234 * 119.99685 * 240.00030 * 6 3 2 8 8 C 1.38236 * 119.99724 * 180.02562 * 7 6 3 9 9 C 1.38237 * 120.00250 * 359.97438 * 8 7 6 10 10 C 1.50692 * 120.00323 * 179.97438 * 9 8 7 11 11 N 1.46503 * 109.47136 * 90.00359 * 10 9 8 12 12 C 1.46498 * 119.99959 * 89.99703 * 11 10 9 13 13 C 1.36937 * 119.99912 * 270.28035 * 11 10 9 14 14 H 1.07995 * 120.00153 * 22.85725 * 13 11 10 15 15 C 1.38814 * 119.99543 * 202.85713 * 13 11 10 16 16 N 1.31617 * 120.00504 * 13.17735 * 15 13 11 17 17 Si 1.86802 * 119.99653 * 193.17934 * 15 13 11 18 18 H 1.48501 * 109.47472 * 89.99970 * 17 15 13 19 19 H 1.48502 * 109.47058 * 209.99981 * 17 15 13 20 20 H 1.48498 * 109.47347 * 330.00149 * 17 15 13 21 21 C 1.38236 * 119.99804 * 0.26142 * 9 8 7 22 22 C 1.38233 * 119.99913 * 60.01747 * 6 3 2 23 23 H 1.09006 * 109.46959 * 299.99759 * 1 2 3 24 24 H 1.08997 * 109.47339 * 59.99977 * 1 2 3 25 25 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47051 * 240.00484 * 2 1 3 27 27 H 1.08997 * 109.47339 * 120.00023 * 2 1 3 28 28 H 1.08996 * 109.47010 * 180.02562 * 5 3 2 29 29 H 1.08995 * 109.46910 * 300.00100 * 5 3 2 30 30 H 1.08997 * 109.46863 * 60.00383 * 5 3 2 31 31 H 1.07997 * 120.00327 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00268 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47283 * 330.00737 * 10 9 8 34 34 H 1.09001 * 109.47591 * 210.00191 * 10 9 8 35 35 H 1.08998 * 109.47062 * 95.13769 * 12 11 10 36 36 H 1.09004 * 109.47500 * 215.13848 * 12 11 10 37 37 H 1.08999 * 109.47060 * 335.13870 * 12 11 10 38 38 H 0.97001 * 120.00266 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.00384 * 179.72933 * 21 9 8 40 40 H 1.07997 * 120.00296 * 0.02562 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0758 1.3092 9 6 6.2973 1.4483 0.3506 10 6 7.7991 1.4512 0.4737 11 7 8.2288 0.2767 1.2369 12 6 8.5330 -0.9769 0.5425 13 6 8.3404 0.3491 2.5997 14 1 7.7869 1.0971 3.1479 15 6 9.1651 -0.5390 3.2766 16 7 10.0309 -1.2722 2.6096 17 14 9.0458 -0.6935 5.1344 18 1 8.0508 -1.7399 5.4813 19 1 10.3723 -1.0695 5.6860 20 1 8.6195 0.6060 5.7129 21 6 5.6931 0.8232 -0.7242 22 6 4.3151 0.8171 -0.8351 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.9988 3.1541 -1.3075 29 1 2.0697 1.5876 -2.1491 30 1 0.5488 2.1253 -1.3968 31 1 3.5421 2.5643 1.9447 32 1 5.9961 2.5678 2.1467 33 1 8.1197 2.3565 0.9891 34 1 8.2453 1.4216 -0.5204 35 1 9.6044 -1.0354 0.3510 36 1 8.2284 -1.8194 1.1634 37 1 7.9926 -1.0086 -0.4035 38 1 10.6074 -1.8925 3.0827 39 1 6.2974 0.3367 -1.4755 40 1 3.8430 0.3261 -1.6732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258741850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = 9.685381 kcal Electronic energy + Delta-G solvation = -17814.458253 eV Core-core repulsion = 15207.312806 eV Total energy + Delta-G solvation = -2607.145446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52703 -37.89556 -36.52507 -33.62285 -31.84581 -31.71499 -29.93004 -27.97846 -27.34143 -25.19638 -23.76299 -23.18903 -21.94212 -20.53127 -18.72453 -17.22046 -16.92459 -16.35265 -16.07313 -15.51547 -15.39016 -14.98997 -14.90406 -14.48616 -14.19678 -13.89819 -13.73492 -13.26762 -13.01612 -12.88788 -12.76524 -12.63907 -12.47229 -12.43819 -12.28479 -11.99444 -11.94266 -11.78586 -11.56178 -11.43640 -11.26397 -10.65364 -9.68339 -9.31724 -8.77284 -7.82705 -5.32064 0.58324 0.63695 1.44139 1.45829 1.54319 2.49694 2.95937 3.30437 3.80298 3.87966 3.90958 4.15885 4.21458 4.24904 4.27012 4.50616 4.54685 4.64936 4.67221 4.74478 4.81334 4.83572 4.88937 4.97395 5.09462 5.16764 5.17770 5.22612 5.28467 5.32228 5.34083 5.45528 5.54372 5.60287 5.67635 5.70512 5.84064 5.94922 6.27001 6.32232 7.14340 7.85291 8.29927 9.20302 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027942 B = 0.005172 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.851131 B = 5412.447940 C = 5766.331145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.046 4.046 4 H 0.079 0.921 5 C -0.140 4.140 6 C -0.089 4.089 7 C -0.127 4.127 8 C -0.119 4.119 9 C -0.104 4.104 10 C 0.182 3.818 11 N -0.611 5.611 12 C 0.180 3.820 13 C -0.257 4.257 14 H 0.067 0.933 15 C -0.053 4.053 16 N -0.939 5.939 17 Si 0.966 3.034 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.267 1.267 21 C -0.122 4.122 22 C -0.117 4.117 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.010 0.990 37 H 0.029 0.971 38 H 0.248 0.752 39 H 0.119 0.881 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.866 5.600 -7.704 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.064 4.064 4 H 0.097 0.903 5 C -0.197 4.197 6 C -0.089 4.089 7 C -0.145 4.145 8 C -0.138 4.138 9 C -0.106 4.106 10 C 0.057 3.943 11 N -0.333 5.333 12 C 0.035 3.965 13 C -0.387 4.387 14 H 0.085 0.915 15 C -0.248 4.248 16 N -0.586 5.586 17 Si 0.794 3.206 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.192 1.192 21 C -0.141 4.141 22 C -0.135 4.135 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.137 0.863 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.718 5.492 -7.652 20.066 hybrid contribution 0.679 -0.437 1.200 1.447 sum -17.038 5.055 -6.452 18.907 Atomic orbital electron populations 1.21806 0.94325 1.02027 1.02462 1.21569 0.96841 0.95348 1.01615 1.20159 0.89286 0.97098 0.99859 0.90255 1.21860 1.01987 1.00047 0.95806 1.20049 0.96382 0.97882 0.94627 1.21210 0.94030 1.00675 0.98580 1.21081 0.94365 1.00147 0.98233 1.20890 0.97914 0.97008 0.94809 1.19855 0.89173 0.89818 0.95483 1.44086 1.78173 1.07696 1.03388 1.20508 0.96536 0.86999 0.92481 1.19467 1.19818 1.16097 0.83347 0.91473 1.25750 0.96427 1.00564 1.02023 1.70228 1.23833 1.29035 1.35541 0.85282 0.76475 0.78145 0.80684 1.21581 1.21887 1.19214 1.21131 0.95382 0.99512 0.98031 1.21082 0.92897 0.99962 0.99590 0.92537 0.91365 0.92490 0.91857 0.93567 0.93018 0.92466 0.90668 0.85040 0.87377 0.93180 0.92476 0.97428 0.97108 0.95269 0.94295 0.86274 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.50 16 2 C -0.12 -2.24 5.14 30.59 0.16 -2.09 16 3 C -0.05 -0.92 2.56 -11.54 -0.03 -0.95 16 4 H 0.08 1.51 7.88 -2.38 -0.02 1.49 16 5 C -0.14 -2.31 8.76 71.98 0.63 -1.68 16 6 C -0.09 -2.41 4.78 -19.87 -0.09 -2.51 16 7 C -0.13 -3.84 9.67 22.27 0.22 -3.62 16 8 C -0.12 -4.30 9.70 22.27 0.22 -4.09 16 9 C -0.10 -3.94 5.46 -19.87 -0.11 -4.05 16 10 C 0.18 7.81 5.77 85.63 0.49 8.30 16 11 N -0.61 -31.89 2.90 -731.32 -2.12 -34.01 16 12 C 0.18 9.26 8.98 127.77 1.15 10.41 16 13 C -0.26 -14.56 9.65 84.03 0.81 -13.75 16 14 H 0.07 3.71 7.86 -2.91 -0.02 3.69 16 15 C -0.05 -3.05 5.09 84.86 0.43 -2.61 16 16 N -0.94 -57.05 10.73 21.65 0.23 -56.82 16 17 Si 0.97 46.31 29.57 68.60 2.03 48.34 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.12 -4.08 9.70 22.27 0.22 -3.86 16 22 C -0.12 -3.33 8.76 22.27 0.20 -3.13 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.07 0.84 6.56 -2.39 -0.02 0.82 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.21 7.57 -2.39 -0.02 1.19 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.94 7.39 -2.39 -0.02 0.92 16 30 H 0.07 0.97 6.56 -2.39 -0.02 0.95 16 31 H 0.13 3.34 7.95 -2.91 -0.02 3.32 16 32 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.05 2.15 7.98 -2.39 -0.02 2.13 16 34 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 35 H 0.01 0.42 7.35 -2.39 -0.02 0.40 16 36 H 0.01 0.58 7.34 -2.38 -0.02 0.56 16 37 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.14 3.12 7.16 -2.91 -0.02 3.10 16 Total: -1.00 -64.49 322.89 6.10 -58.40 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.98 Total: 9.22 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.98 Total: -25.13 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -1.89 Total: -90.83 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -64.49 6.10 -58.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258741850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.084 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds