Wall clock time and date at job start Mon Mar 30 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 N 1.46498 * 109.46762 * 179.97438 * 10 9 8 12 12 C 1.36943 * 119.99610 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00162 * 0.02562 * 12 11 10 14 14 C 1.38820 * 119.99688 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99784 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47519 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46974 * 120.00269 * 16 14 12 19 19 H 1.48503 * 109.47151 * 239.99868 * 16 14 12 20 20 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 21 21 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 22 22 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 23 23 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 24 24 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 27 27 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 28 28 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 29 29 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 30 30 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 32 32 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 34 34 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 35 35 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 36 36 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 37 37 H 0.97001 * 120.00666 * 359.97438 * 11 10 9 38 38 H 0.97009 * 119.99600 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.00299 * 179.97438 * 20 8 7 40 40 H 1.07997 * 120.00423 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 7 5.2782 -4.0722 5.6237 12 6 6.4727 -4.7413 5.5956 13 1 7.0591 -4.7616 4.6888 14 6 6.9298 -5.3936 6.7325 15 7 6.2149 -5.3694 7.8373 16 14 8.5588 -6.3069 6.6939 17 1 9.1634 -6.1840 5.3431 18 1 9.4784 -5.7217 7.7024 19 1 8.3300 -7.7407 7.0058 20 6 3.2880 -0.6902 3.2690 21 6 2.8265 -0.0384 2.1407 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6767 -0.2076 -2.1391 30 1 3.1300 -0.7218 -1.2489 31 1 1.0771 -2.5585 0.7387 32 1 1.8973 -3.7190 2.7496 33 1 3.5709 -2.0006 5.5310 34 1 2.7277 -3.4824 5.0198 35 1 4.6742 -4.1053 3.6153 36 1 5.5172 -2.6234 4.1266 37 1 4.7521 -4.0532 6.4385 38 1 6.5345 -5.8249 8.6319 39 1 3.9085 -0.1651 3.9801 40 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258788031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:15 Heat of formation + Delta-G solvation = 8.493703 kcal Electronic energy + Delta-G solvation = -17269.280756 eV Core-core repulsion = 14662.083634 eV Total energy + Delta-G solvation = -2607.197121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87275 -36.91649 -34.81696 -32.31118 -30.97735 -30.25194 -27.52921 -27.42250 -27.21691 -23.99493 -22.20593 -22.11188 -20.81703 -19.16972 -17.16269 -16.33051 -15.37741 -14.92299 -14.60220 -14.42146 -13.96864 -13.88337 -13.47147 -13.44113 -13.14660 -12.98942 -12.75842 -12.16976 -12.12488 -11.86929 -11.55995 -11.45345 -11.20423 -10.94533 -10.94257 -10.77134 -10.68905 -10.48497 -10.40093 -10.00303 -9.68445 -8.85294 -8.72847 -8.27753 -6.88867 -5.73669 -3.02229 1.52262 1.58568 3.45480 3.50916 3.53472 3.91086 4.48529 4.61449 4.62570 4.83629 5.10123 5.13045 5.16620 5.18064 5.37045 5.42702 5.56759 5.57278 5.60986 5.63433 5.68515 5.72489 5.84535 5.86768 5.88657 5.99683 6.05556 6.10105 6.12890 6.25325 6.34128 6.38855 6.65198 6.73670 6.74623 6.89043 7.04524 7.20333 7.73735 8.45470 9.56405 10.14633 10.49713 11.49473 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.047742 B = 0.003555 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.344798 B = 7873.687648 C = 7969.032271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.085 4.085 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.067 4.067 9 C -0.092 4.092 10 C 0.161 3.839 11 N -0.735 5.735 12 C -0.237 4.237 13 H 0.071 0.929 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.115 4.115 21 C -0.121 4.121 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 12.444 -16.147 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.068 4.068 9 C -0.129 4.129 10 C 0.033 3.967 11 N -0.379 5.379 12 C -0.369 4.369 13 H 0.089 0.911 14 C -0.212 4.212 15 N -0.583 5.583 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.133 4.133 21 C -0.139 4.139 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.874 12.373 -16.216 23.602 hybrid contribution 0.774 -0.583 0.372 1.038 sum -11.100 11.790 -15.844 22.655 Atomic orbital electron populations 1.21881 0.93957 1.01998 1.01624 1.19460 0.95486 0.94933 0.92926 1.21955 1.01287 0.95106 1.01700 1.21886 1.01371 1.00201 0.96082 1.19699 0.98727 0.94203 0.95900 1.20879 1.00596 0.94268 0.97562 1.21067 0.98126 0.99796 0.94285 1.19972 0.96289 0.93968 0.96533 1.20824 0.98488 0.99394 0.94229 1.20589 0.91268 0.93988 0.90806 1.42401 1.23620 1.62179 1.09723 1.19299 0.96446 1.24407 0.96720 0.91133 1.24753 0.98994 1.01495 0.95926 1.69679 1.38648 1.48409 1.01597 0.86104 0.83453 0.79362 0.77227 1.20536 1.21859 1.21852 1.21096 0.99950 0.94520 0.97749 1.21102 0.98438 0.99892 0.94429 0.92550 0.92611 0.92463 0.92225 0.92627 0.92296 0.92439 0.92612 0.92436 0.86619 0.86125 0.91012 0.91011 0.96299 0.96310 0.78294 0.93586 0.86129 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.17 7.13 37.16 0.26 -0.90 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 5 C -0.09 -1.00 4.76 -104.62 -0.50 -1.50 16 6 C -0.12 -1.42 8.71 -39.59 -0.34 -1.76 16 7 C -0.11 -1.61 9.70 -39.59 -0.38 -1.99 16 8 C -0.07 -1.02 5.13 -104.62 -0.54 -1.56 16 9 C -0.09 -1.59 5.46 -27.88 -0.15 -1.74 16 10 C 0.16 3.44 6.24 -4.04 -0.03 3.42 16 11 N -0.74 -19.47 5.60 -59.91 -0.34 -19.80 16 12 C -0.24 -6.90 9.99 -15.05 -0.15 -7.05 16 13 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 14 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 15 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 16 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 21 C -0.12 -1.49 8.98 -39.58 -0.36 -1.84 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 25 H 0.06 0.50 7.52 -51.93 -0.39 0.10 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 28 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.21 7.10 -52.49 -0.37 0.83 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.12 1.26 5.90 -52.49 -0.31 0.95 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -31.24 324.16 -8.66 -39.91 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.73 Total: 4.91 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.18 Total: -19.59 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.39 Total: -47.95 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.24 -8.66 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258788031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.400 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds