Wall clock time and date at job start Mon Mar 30 2020 05:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 C 1.52996 * 109.47203 * 89.99823 * 9 8 7 11 11 N 1.46498 * 109.46762 * 179.97438 * 10 9 8 12 12 C 1.36943 * 119.99610 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00162 * 0.02562 * 12 11 10 14 14 C 1.38820 * 119.99688 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99784 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99743 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47519 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46974 * 120.00269 * 16 14 12 19 19 H 1.48503 * 109.47151 * 239.99868 * 16 14 12 20 20 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 21 21 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 22 22 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 23 23 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 24 24 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 27 27 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 28 28 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 29 29 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 30 30 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 31 31 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 32 32 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 34 34 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 35 35 H 1.08994 * 109.47503 * 299.99842 * 10 9 8 36 36 H 1.09001 * 109.47176 * 60.00391 * 10 9 8 37 37 H 0.97001 * 120.00666 * 359.97438 * 11 10 9 38 38 H 0.97009 * 119.99600 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.00299 * 179.97438 * 20 8 7 40 40 H 1.07997 * 120.00423 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 6 3.4494 -2.7215 4.7226 10 6 4.7956 -3.3843 4.4237 11 7 5.2782 -4.0722 5.6237 12 6 6.4727 -4.7413 5.5956 13 1 7.0591 -4.7616 4.6888 14 6 6.9298 -5.3936 6.7325 15 7 6.2149 -5.3694 7.8373 16 14 8.5588 -6.3069 6.6939 17 1 9.1634 -6.1840 5.3431 18 1 9.4784 -5.7217 7.7024 19 1 8.3300 -7.7407 7.0058 20 6 3.2880 -0.6902 3.2690 21 6 2.8265 -0.0384 2.1407 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6767 -0.2076 -2.1391 30 1 3.1300 -0.7218 -1.2489 31 1 1.0771 -2.5585 0.7387 32 1 1.8973 -3.7190 2.7496 33 1 3.5709 -2.0006 5.5310 34 1 2.7277 -3.4824 5.0198 35 1 4.6742 -4.1053 3.6153 36 1 5.5172 -2.6234 4.1266 37 1 4.7521 -4.0532 6.4385 38 1 6.5345 -5.8249 8.6319 39 1 3.9085 -0.1651 3.9801 40 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258788031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:15 Heat of formation + Delta-G solvation = -7.896875 kcal Electronic energy + Delta-G solvation = -17269.991505 eV Core-core repulsion = 14662.083634 eV Total energy + Delta-G solvation = -2607.907870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83443 -37.97006 -36.55461 -34.05479 -31.97316 -31.95023 -28.73575 -28.18759 -28.05957 -25.82938 -23.67439 -23.20739 -22.18879 -20.02746 -19.24306 -17.34151 -16.71247 -16.48379 -15.84113 -15.44717 -15.29394 -15.08167 -15.06232 -14.61109 -14.43585 -14.18654 -13.69978 -13.18905 -13.07188 -12.93054 -12.81736 -12.52870 -12.48906 -12.43472 -12.38309 -12.06793 -12.04457 -11.83854 -11.72979 -11.40358 -11.30809 -10.98073 -9.76648 -9.35486 -9.05333 -7.98361 -5.28640 0.46839 0.55483 1.46053 1.47473 1.57969 2.53797 2.87252 3.34996 3.66783 3.82961 3.84353 4.08695 4.16328 4.19437 4.37545 4.39705 4.43042 4.45970 4.61977 4.68927 4.72269 4.82430 4.85851 4.93827 5.04589 5.06505 5.07120 5.12445 5.20496 5.25170 5.27483 5.30714 5.41619 5.45646 5.48134 5.63983 5.78393 5.82705 6.17080 6.24221 7.29811 8.03588 8.28913 9.25433 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.047742 B = 0.003555 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.344798 B = 7873.687648 C = 7969.032271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.081 4.081 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.089 4.089 9 C -0.076 4.076 10 C 0.163 3.837 11 N -0.748 5.748 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.075 4.075 15 N -0.969 5.969 16 Si 0.978 3.022 17 H -0.266 1.266 18 H -0.290 1.290 19 H -0.290 1.290 20 C -0.126 4.126 21 C -0.123 4.123 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 13.241 -18.107 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.134 4.134 7 C -0.143 4.143 8 C -0.090 4.090 9 C -0.114 4.114 10 C 0.037 3.963 11 N -0.391 5.391 12 C -0.382 4.382 13 H 0.092 0.908 14 C -0.268 4.268 15 N -0.620 5.620 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.144 4.144 21 C -0.141 4.141 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.140 0.860 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.165 13.187 -18.213 25.565 hybrid contribution 0.803 -0.767 0.891 1.424 sum -11.362 12.420 -17.322 24.154 Atomic orbital electron populations 1.21874 0.92997 1.02224 1.02231 1.19541 0.96199 0.95331 0.91794 1.21963 1.01124 0.94454 1.02544 1.21888 1.00798 1.00374 0.96436 1.20090 0.97458 0.94064 0.96474 1.21116 1.00431 0.94686 0.97199 1.21190 0.98246 1.00085 0.94784 1.19815 0.98161 0.94670 0.96309 1.20593 0.96174 0.99106 0.95501 1.20678 0.93236 0.93495 0.88889 1.42618 1.23123 1.62492 1.10872 1.19683 0.97319 1.24339 0.96894 0.90824 1.25636 1.02752 1.02770 0.95604 1.69833 1.40480 1.49510 1.02171 0.85016 0.79028 0.77662 0.77694 1.19082 1.21698 1.21689 1.21224 1.00277 0.94239 0.98626 1.21357 0.98108 1.00843 0.93795 0.93033 0.90961 0.92468 0.92527 0.91089 0.92236 0.92499 0.90893 0.93342 0.84625 0.85965 0.91262 0.91253 0.96575 0.96600 0.79321 0.93817 0.85972 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.29 71.98 0.60 -1.26 16 2 C -0.03 -0.45 0.85 -52.93 -0.05 -0.50 16 3 C -0.14 -1.95 7.13 71.98 0.51 -1.43 16 4 C -0.14 -2.01 8.29 71.98 0.60 -1.42 16 5 C -0.08 -1.74 4.76 -19.86 -0.09 -1.83 16 6 C -0.12 -2.69 8.71 22.27 0.19 -2.49 16 7 C -0.12 -3.44 9.70 22.27 0.22 -3.23 16 8 C -0.09 -2.71 5.13 -19.87 -0.10 -2.82 16 9 C -0.08 -2.69 5.46 29.85 0.16 -2.53 16 10 C 0.16 7.11 6.24 86.38 0.54 7.65 16 11 N -0.75 -40.39 5.60 -343.46 -1.92 -42.32 16 12 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 13 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 15 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 16 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 C -0.13 -3.47 9.70 22.27 0.22 -3.25 16 21 C -0.12 -2.86 8.98 22.27 0.20 -2.66 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.78 7.39 -2.39 -0.02 0.76 16 25 H 0.06 0.80 7.52 -2.39 -0.02 0.78 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.80 7.51 -2.39 -0.02 0.78 16 28 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.14 2.53 7.10 -2.91 -0.02 2.51 16 32 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 34 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 38 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 39 H 0.12 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.14 2.65 5.90 -2.91 -0.02 2.63 16 Total: -1.00 -66.06 324.16 4.97 -61.09 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.29 Total: 26.12 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 4.30 Total: -33.60 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -1.64 Total: -102.75 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -66.06 4.97 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258788031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.191 kcal (2) G-P(sol) polarization free energy of solvation -66.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds