Wall clock time and date at job start Mon Mar 30 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.38277 * 119.92630 * 269.72986 * 5 4 2 7 7 C 1.38107 * 120.07804 * 179.72478 * 6 5 4 8 8 C 1.38916 * 119.91810 * 0.54647 * 7 6 5 9 9 N 1.39668 * 120.07056 * 179.70773 * 8 7 6 10 10 C 1.46506 * 120.00041 * 180.02562 * 9 8 7 11 11 C 1.46500 * 120.00361 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.46995 * 90.00534 * 11 9 8 13 13 H 1.08003 * 120.00013 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00078 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00289 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00041 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47097 * 120.00059 * 16 14 12 19 19 H 1.48506 * 109.46804 * 239.99977 * 16 14 12 20 20 C 1.38905 * 119.85091 * 359.72443 * 8 7 6 21 21 C 1.38103 * 119.93019 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 29 29 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 30 30 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 31 31 H 1.08008 * 119.96501 * 359.97438 * 6 5 4 32 32 H 1.07995 * 120.04314 * 180.27883 * 7 6 5 33 33 H 1.09005 * 109.46858 * 89.99582 * 10 9 8 34 34 H 1.08992 * 109.47393 * 210.00073 * 10 9 8 35 35 H 1.09005 * 109.46687 * 329.99965 * 10 9 8 36 36 H 1.09001 * 109.47118 * 210.00033 * 11 9 8 37 37 H 1.09001 * 109.47065 * 330.00697 * 11 9 8 38 38 H 0.96997 * 120.00200 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.03947 * 179.97438 * 20 8 7 40 40 H 1.08002 * 119.96767 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 2.4854 -3.0965 -0.5997 7 6 2.1207 -4.4271 -0.5376 8 6 0.9093 -4.8394 -1.0783 9 7 0.5400 -6.1853 -1.0227 10 6 -0.7377 -6.6185 -1.5939 11 6 1.4303 -7.1638 -0.3933 12 6 1.0998 -7.2734 1.0729 13 1 0.3063 -6.6737 1.4939 14 6 1.8111 -8.1383 1.8772 15 7 2.7777 -8.8681 1.3647 16 14 1.4019 -8.2736 3.6948 17 1 0.2828 -7.3533 4.0201 18 1 1.0036 -9.6690 4.0100 19 1 2.5946 -7.9055 4.4994 20 6 0.0663 -3.9103 -1.6745 21 6 0.4348 -2.5804 -1.7285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6444 -1.2952 31 1 3.4293 -2.7761 -0.1838 32 1 2.7783 -5.1469 -0.0732 33 1 -0.5948 -6.8893 -2.6400 34 1 -1.1080 -7.4824 -1.0422 35 1 -1.4608 -5.8058 -1.5245 36 1 1.2969 -8.1352 -0.8693 37 1 2.4649 -6.8411 -0.5094 38 1 3.2779 -9.4769 1.9304 39 1 -0.8761 -4.2275 -2.0962 40 1 -0.2199 -1.8575 -2.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258821101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:47 Heat of formation + Delta-G solvation = 7.089021 kcal Electronic energy + Delta-G solvation = -17774.114635 eV Core-core repulsion = 15166.856602 eV Total energy + Delta-G solvation = -2607.258033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.12062 -36.77822 -34.83633 -32.68161 -30.42685 -30.08441 -27.81788 -27.04030 -26.34936 -24.36458 -22.34764 -21.55180 -20.05853 -19.39953 -16.62562 -16.43529 -15.36062 -14.87143 -14.64222 -14.17747 -14.12651 -13.69211 -13.61560 -12.95708 -12.83772 -12.64862 -12.18483 -12.12954 -11.90146 -11.60585 -11.39745 -11.30000 -11.22297 -10.93612 -10.72632 -10.67757 -10.53061 -10.34542 -10.22764 -9.84350 -9.69411 -8.72683 -8.50645 -8.22780 -6.42423 -5.99863 -4.17047 2.13652 2.30534 3.25244 3.33364 3.38492 4.17901 4.41804 4.53801 4.99696 5.06302 5.12495 5.21875 5.43702 5.57443 5.63264 5.68652 5.73364 5.80671 5.86191 5.90870 6.00923 6.04913 6.08493 6.11217 6.21564 6.31028 6.38124 6.45339 6.48156 6.54620 6.68561 6.99369 7.08274 7.23614 7.29953 7.39995 7.64938 7.81742 8.16562 8.29346 8.52168 8.92639 9.49934 10.95941 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.005448 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.113513 B = 5138.534916 C = 5722.328167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.059 4.059 5 C -0.167 4.167 6 C -0.072 4.072 7 C -0.186 4.186 8 C 0.236 3.764 9 N -0.617 5.617 10 C 0.099 3.901 11 C 0.249 3.751 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.221 4.221 21 C -0.070 4.070 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.263 0.737 39 H 0.112 0.888 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 14.120 -5.164 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.097 4.097 5 C -0.169 4.169 6 C -0.090 4.090 7 C -0.208 4.208 8 C 0.129 3.871 9 N -0.323 5.323 10 C -0.045 4.045 11 C 0.129 3.871 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.244 4.244 21 C -0.089 4.089 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.181 13.723 -5.107 14.984 hybrid contribution -0.220 -0.304 1.127 1.188 sum -3.401 13.419 -3.981 14.404 Atomic orbital electron populations 1.21883 0.95452 1.02431 1.00698 1.21113 0.96024 0.95207 0.98834 1.21859 1.00744 0.96486 1.01292 1.20426 1.00057 0.92089 0.97104 1.19327 0.96674 0.94673 1.06241 1.20675 0.98303 0.92471 0.97599 1.20879 0.97552 0.96343 1.06026 1.17935 0.92662 0.84500 0.91978 1.47065 1.19986 1.04703 1.60563 1.21457 0.86142 0.99968 0.96931 1.19277 0.89268 0.86428 0.92129 1.21629 1.18267 1.23163 0.93835 0.92228 1.24960 0.94881 0.95363 0.98866 1.69941 1.21740 1.25781 1.35984 0.86478 0.78428 0.77821 0.84973 1.19740 1.20940 1.20840 1.20556 1.00983 0.93228 1.09614 1.20522 0.95472 0.94549 0.98348 0.93466 0.93255 0.91699 0.91191 0.93063 0.92921 0.92995 0.92177 0.92060 0.87269 0.85178 0.94701 0.91521 0.92749 0.95247 0.94655 0.92717 0.87026 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.76 37.16 0.33 -1.39 16 2 C -0.09 -1.09 2.91 -90.62 -0.26 -1.36 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.07 16 4 C -0.06 -0.74 4.84 -27.88 -0.13 -0.88 16 5 C -0.17 -2.61 4.72 -104.59 -0.49 -3.10 16 6 C -0.07 -1.25 9.69 -39.61 -0.38 -1.64 16 7 C -0.19 -3.83 9.21 -39.38 -0.36 -4.19 16 8 C 0.24 4.86 6.55 -83.79 -0.55 4.31 16 9 N -0.62 -13.43 2.99 -180.99 -0.54 -13.98 16 10 C 0.10 1.77 10.19 59.85 0.61 2.38 16 11 C 0.25 6.31 4.91 -5.19 -0.03 6.29 16 12 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 13 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 16 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.22 -3.91 9.21 -39.38 -0.36 -4.27 16 21 C -0.07 -1.11 7.95 -39.61 -0.31 -1.42 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.87 6.26 -51.93 -0.33 0.54 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.13 2.95 6.14 -52.49 -0.32 2.63 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 36 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.11 1.79 6.14 -52.48 -0.32 1.47 16 40 H 0.11 1.43 8.04 -52.49 -0.42 1.01 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -28.59 322.57 -8.64 -37.23 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.64 Total: 0.19 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.03 Total: -19.64 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.20 Total: -39.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.59 -8.64 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.316 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds