Wall clock time and date at job start Mon Mar 30 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.38277 * 119.92630 * 269.72986 * 5 4 2 7 7 C 1.38107 * 120.07804 * 179.72478 * 6 5 4 8 8 C 1.38916 * 119.91810 * 0.54647 * 7 6 5 9 9 N 1.39668 * 120.07056 * 179.70773 * 8 7 6 10 10 C 1.46506 * 120.00041 * 180.02562 * 9 8 7 11 11 C 1.46500 * 120.00361 * 0.02562 * 9 8 7 12 12 C 1.50702 * 109.46995 * 90.00534 * 11 9 8 13 13 H 1.08003 * 120.00013 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00078 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00289 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00041 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46912 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47097 * 120.00059 * 16 14 12 19 19 H 1.48506 * 109.46804 * 239.99977 * 16 14 12 20 20 C 1.38905 * 119.85091 * 359.72443 * 8 7 6 21 21 C 1.38103 * 119.93019 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 29 29 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 30 30 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 31 31 H 1.08008 * 119.96501 * 359.97438 * 6 5 4 32 32 H 1.07995 * 120.04314 * 180.27883 * 7 6 5 33 33 H 1.09005 * 109.46858 * 89.99582 * 10 9 8 34 34 H 1.08992 * 109.47393 * 210.00073 * 10 9 8 35 35 H 1.09005 * 109.46687 * 329.99965 * 10 9 8 36 36 H 1.09001 * 109.47118 * 210.00033 * 11 9 8 37 37 H 1.09001 * 109.47065 * 330.00697 * 11 9 8 38 38 H 0.96997 * 120.00200 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.03947 * 179.97438 * 20 8 7 40 40 H 1.08002 * 119.96767 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 2.4854 -3.0965 -0.5997 7 6 2.1207 -4.4271 -0.5376 8 6 0.9093 -4.8394 -1.0783 9 7 0.5400 -6.1853 -1.0227 10 6 -0.7377 -6.6185 -1.5939 11 6 1.4303 -7.1638 -0.3933 12 6 1.0998 -7.2734 1.0729 13 1 0.3063 -6.6737 1.4939 14 6 1.8111 -8.1383 1.8772 15 7 2.7777 -8.8681 1.3647 16 14 1.4019 -8.2736 3.6948 17 1 0.2828 -7.3533 4.0201 18 1 1.0036 -9.6690 4.0100 19 1 2.5946 -7.9055 4.4994 20 6 0.0663 -3.9103 -1.6745 21 6 0.4348 -2.5804 -1.7285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6444 -1.2952 31 1 3.4293 -2.7761 -0.1838 32 1 2.7783 -5.1469 -0.0732 33 1 -0.5948 -6.8893 -2.6400 34 1 -1.1080 -7.4824 -1.0422 35 1 -1.4608 -5.8058 -1.5245 36 1 1.2969 -8.1352 -0.8693 37 1 2.4649 -6.8411 -0.5094 38 1 3.2779 -9.4769 1.9304 39 1 -0.8761 -4.2275 -2.0962 40 1 -0.2199 -1.8575 -2.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258821101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:46 Heat of formation + Delta-G solvation = -6.390503 kcal Electronic energy + Delta-G solvation = -17774.699151 eV Core-core repulsion = 15166.856602 eV Total energy + Delta-G solvation = -2607.842549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52599 -38.08444 -36.17328 -34.70368 -31.89714 -31.40345 -29.64979 -27.89545 -27.65340 -26.05609 -23.98010 -23.00498 -21.30267 -20.60383 -18.64663 -18.08298 -16.93599 -16.26142 -16.13111 -15.57061 -15.38837 -15.00273 -14.93149 -14.45660 -14.28022 -14.06458 -13.68978 -13.20916 -13.18210 -13.02065 -12.91670 -12.68107 -12.63751 -12.53772 -12.36556 -12.13840 -11.84399 -11.61026 -11.47034 -11.40779 -11.30659 -10.65549 -10.27701 -9.64488 -8.36249 -7.76854 -6.38659 0.71010 0.89662 1.34993 1.36543 1.48953 2.33603 2.64495 3.04995 3.12762 4.02942 4.06131 4.18521 4.22733 4.27180 4.42538 4.52885 4.67169 4.68610 4.73360 4.84606 4.88279 4.92272 4.94790 5.00809 5.05453 5.13766 5.17793 5.17998 5.24564 5.33970 5.40462 5.53938 5.57720 5.61843 5.70539 5.73583 5.99937 6.06513 6.24944 6.50528 6.82602 6.95139 7.33521 8.82505 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023326 B = 0.005448 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.113513 B = 5138.534916 C = 5722.328167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.057 4.057 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.215 4.215 8 C 0.205 3.795 9 N -0.634 5.634 10 C 0.099 3.901 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.277 1.277 20 C -0.216 4.216 21 C -0.064 4.064 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.009 0.991 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 16.768 -5.428 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.094 4.094 5 C -0.156 4.156 6 C -0.096 4.096 7 C -0.238 4.238 8 C 0.101 3.899 9 N -0.342 5.342 10 C -0.044 4.044 11 C 0.145 3.855 12 C -0.580 4.580 13 H 0.066 0.934 14 C -0.186 4.186 15 N -0.567 5.567 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.202 1.202 20 C -0.239 4.239 21 C -0.082 4.082 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.425 16.402 -5.389 17.823 hybrid contribution 0.182 -0.999 1.155 1.538 sum -4.242 15.403 -4.234 16.528 Atomic orbital electron populations 1.21878 0.95190 1.01436 1.01908 1.21088 0.96235 0.96355 0.97481 1.21811 1.01018 0.94901 1.02199 1.20496 1.00830 0.89716 0.98407 1.19733 0.95911 0.96109 1.03803 1.20869 0.99377 0.91567 0.97812 1.20782 0.97956 0.97194 1.07891 1.18216 0.93499 0.84498 0.93695 1.46935 1.20841 1.04735 1.61689 1.21588 0.84995 1.00422 0.97409 1.18762 0.88934 0.86372 0.91450 1.21805 1.17994 1.23057 0.95118 0.93380 1.25780 0.94625 0.94910 1.03313 1.70043 1.22590 1.26365 1.37685 0.85447 0.78224 0.78128 0.79509 1.19583 1.19835 1.20235 1.20822 1.01078 0.93457 1.08547 1.20931 0.95699 0.94320 0.97291 0.92896 0.91543 0.93672 0.93086 0.92538 0.92534 0.91738 0.90123 0.91305 0.86015 0.88870 0.92991 0.92573 0.90391 0.97313 0.97239 0.92368 0.85037 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.76 71.98 0.63 -2.31 16 2 C -0.09 -1.91 2.91 -10.79 -0.03 -1.94 16 3 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 4 C -0.06 -1.24 4.84 29.85 0.14 -1.10 16 5 C -0.15 -4.47 4.72 -19.84 -0.09 -4.57 16 6 C -0.08 -2.73 9.69 22.25 0.22 -2.51 16 7 C -0.22 -9.31 9.21 22.40 0.21 -9.11 16 8 C 0.21 8.62 6.55 38.21 0.25 8.87 16 9 N -0.63 -28.53 2.99 -726.54 -2.17 -30.70 16 10 C 0.10 3.52 10.19 127.77 1.30 4.82 16 11 C 0.27 14.35 4.91 85.63 0.42 14.77 16 12 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 13 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 16 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C -0.22 -7.31 9.21 22.40 0.21 -7.10 16 21 C -0.06 -1.83 7.95 22.25 0.18 -1.65 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 1.08 6.26 -2.39 -0.01 1.06 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 30 H 0.07 1.42 8.08 -2.38 -0.02 1.40 16 31 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 33 H 0.05 1.64 8.14 -2.38 -0.02 1.63 16 34 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 35 H 0.08 2.36 6.20 -2.38 -0.01 2.35 16 36 H 0.01 0.50 8.07 -2.39 -0.02 0.48 16 37 H 0.01 0.56 6.20 -2.39 -0.01 0.55 16 38 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.13 3.85 6.14 -2.91 -0.02 3.83 16 40 H 0.14 3.10 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -63.72 322.57 5.92 -57.80 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.99 Total: 14.01 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 4.79 Total: -33.00 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.89 Total: -85.50 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.72 5.92 -57.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.407 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds