Wall clock time and date at job start Mon Mar 30 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46862 * 2 1 4 4 H 1.08999 * 109.47185 * 305.00571 * 3 2 1 5 5 C 1.53002 * 109.46727 * 65.00750 * 3 2 1 6 6 C 1.50699 * 109.47004 * 184.99957 * 3 2 1 7 7 C 1.38236 * 119.99576 * 120.00251 * 6 3 2 8 8 C 1.38240 * 120.00058 * 179.97438 * 7 6 3 9 9 C 1.38232 * 119.99631 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99860 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47107 * 89.99965 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00575 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 90.00010 * 17 15 13 19 19 H 1.48502 * 109.46886 * 209.99874 * 17 15 13 20 20 H 1.48505 * 109.47112 * 329.99864 * 17 15 13 21 21 C 1.38234 * 120.00312 * 0.27932 * 9 8 7 22 22 C 1.38235 * 119.99933 * 359.51395 * 21 9 8 23 23 H 1.08993 * 109.47428 * 59.99278 * 1 2 3 24 24 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46688 * 299.99710 * 1 2 3 26 26 H 1.08999 * 109.46514 * 240.00736 * 2 1 3 27 27 H 1.08993 * 109.47428 * 120.00722 * 2 1 3 28 28 H 1.09006 * 109.47111 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47030 * 299.99732 * 5 3 2 30 30 H 1.08996 * 109.47378 * 59.99441 * 5 3 2 31 31 H 1.08002 * 120.00221 * 359.97438 * 7 6 3 32 32 H 1.07996 * 119.99763 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47152 * 330.00052 * 10 9 8 34 34 H 1.09001 * 109.46980 * 210.00152 * 10 9 8 35 35 H 1.00908 * 110.99847 * 56.05051 * 11 10 9 36 36 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 37 37 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 38 38 H 0.96998 * 120.00185 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.00015 * 179.72855 * 21 9 8 40 40 H 1.08002 * 120.00360 * 180.27290 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1265 1.3075 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0738 -1.1961 8 6 5.5239 2.0760 -1.3095 9 6 6.2973 1.4493 -0.3503 10 6 7.7992 1.4521 -0.4736 11 7 8.3444 2.6322 0.2107 12 6 9.8097 2.6680 0.1116 13 6 10.3315 3.8892 0.8239 14 1 9.6437 4.5703 1.3028 15 6 11.6873 4.1369 0.8643 16 7 12.5250 3.3072 0.2817 17 14 12.3343 5.6502 1.7479 18 1 12.6048 5.3157 3.1693 19 1 13.5905 6.1033 1.0984 20 1 11.3220 6.7346 1.6785 21 6 5.6928 0.8154 0.7191 22 6 4.3153 0.8169 0.8348 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 1.9990 3.1541 1.3077 29 1 0.5490 2.1251 1.3971 30 1 2.0699 1.5874 2.1492 31 1 3.5419 2.5638 -1.9452 32 1 5.9959 2.5680 -2.1469 33 1 8.0773 1.4823 -1.5271 34 1 8.2030 0.5485 -0.0170 35 1 8.0467 2.6610 1.1744 36 1 10.2270 1.7728 0.5725 37 1 10.1020 2.7064 -0.9379 38 1 13.4788 3.4817 0.3098 39 1 6.2969 0.3220 1.4661 40 1 3.8432 0.3255 1.6727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258821326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:46 Heat of formation + Delta-G solvation = -5.313007 kcal Electronic energy + Delta-G solvation = -17044.658729 eV Core-core repulsion = 14436.862904 eV Total energy + Delta-G solvation = -2607.795825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57313 -36.66242 -34.89800 -32.59051 -31.04970 -30.71845 -29.15213 -26.89667 -25.08136 -23.56380 -22.68308 -21.52849 -20.96677 -19.70426 -16.72480 -16.07813 -15.55208 -15.05605 -14.77979 -14.54958 -14.18743 -13.99050 -13.60046 -13.34272 -13.01712 -12.99470 -12.60610 -12.25563 -11.97963 -11.90348 -11.64231 -11.40425 -11.16065 -11.02608 -10.86232 -10.75025 -10.70640 -10.54415 -10.38246 -9.91364 -9.19300 -8.68988 -8.48806 -8.30730 -7.28489 -6.02868 -4.04818 1.55635 1.63946 3.32435 3.38291 3.43432 3.95152 4.44446 4.56602 4.65895 4.87424 5.07162 5.18211 5.21701 5.22596 5.29875 5.33005 5.35946 5.44825 5.57594 5.65995 5.69636 5.75438 5.79368 5.84537 5.90493 5.99698 6.12696 6.15244 6.17887 6.32872 6.34996 6.65098 6.78401 6.96614 7.22242 7.25840 7.41533 7.78704 8.12405 8.39256 8.60610 9.04495 9.60053 11.08285 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046949 B = 0.003445 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.242469 B = 8125.478882 C = 8363.273759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.050 4.050 4 H 0.074 0.926 5 C -0.145 4.145 6 C -0.088 4.088 7 C -0.120 4.120 8 C -0.097 4.097 9 C -0.069 4.069 10 C 0.093 3.907 11 N -0.683 5.683 12 C 0.193 3.807 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.115 4.115 22 C -0.116 4.116 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.329 0.671 36 H -0.013 1.013 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.809 -6.577 -0.617 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.068 4.068 4 H 0.093 0.907 5 C -0.202 4.202 6 C -0.089 4.089 7 C -0.138 4.138 8 C -0.116 4.116 9 C -0.070 4.070 10 C -0.036 4.036 11 N -0.314 5.314 12 C 0.067 3.933 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.133 4.133 22 C -0.134 4.134 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.146 0.854 36 H 0.004 0.996 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.682 -6.184 -1.204 22.579 hybrid contribution 0.846 0.084 1.049 1.350 sum -20.836 -6.100 -0.155 21.711 Atomic orbital electron populations 1.21839 0.95946 1.01469 1.01858 1.21586 0.95495 0.95970 1.02285 1.20136 0.91353 0.96449 0.98867 0.90746 1.21895 1.00861 1.00756 0.96718 1.19744 0.94806 0.98923 0.95381 1.20997 0.94705 1.00221 0.97913 1.21037 0.93186 0.98225 0.99138 1.20026 0.96067 0.96427 0.94444 1.20892 0.89094 0.93221 1.00410 1.60745 1.13831 1.37524 1.19282 1.19587 0.80432 0.95964 0.97367 1.21186 0.91681 1.08323 1.34029 0.91944 1.24996 0.96889 0.96952 0.95775 1.69964 1.02758 1.36876 1.44215 0.86473 0.78297 0.82999 0.79503 1.20716 1.21219 1.19735 1.21053 0.94550 0.99940 0.97801 1.20839 0.93473 1.00357 0.98761 0.92816 0.92903 0.92481 0.91921 0.91850 0.92495 0.92440 0.92510 0.86598 0.86000 0.90974 0.95503 0.85417 0.99564 0.95341 0.92901 0.86477 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.98 5.14 -26.73 -0.14 -1.11 16 3 C -0.05 -0.47 2.56 -91.77 -0.24 -0.70 16 4 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 5 C -0.15 -1.28 8.76 37.16 0.33 -0.96 16 6 C -0.09 -1.07 4.78 -104.62 -0.50 -1.57 16 7 C -0.12 -1.56 9.67 -39.58 -0.38 -1.94 16 8 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 9 C -0.07 -1.11 5.39 -104.62 -0.56 -1.67 16 10 C 0.09 1.73 5.81 -4.98 -0.03 1.70 16 11 N -0.68 -15.19 6.48 -116.34 -0.75 -15.95 16 12 C 0.19 5.16 5.44 -4.98 -0.03 5.14 16 13 C -0.51 -14.83 9.32 -34.44 -0.32 -15.15 16 14 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 17 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.11 -1.66 9.70 -39.58 -0.38 -2.04 16 22 C -0.12 -1.47 8.76 -39.58 -0.35 -1.82 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.54 7.57 -51.93 -0.39 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.43 6.56 -51.93 -0.34 0.08 16 30 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 31 H 0.12 1.26 7.95 -52.49 -0.42 0.84 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 34 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.33 7.10 8.71 -39.29 -0.34 6.75 16 36 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 1.23 7.16 -52.49 -0.38 0.86 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -30.33 327.84 -9.59 -39.92 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.77 Total: 1.77 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.72 Total: -21.19 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.02 Total: -42.37 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.33 -9.59 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.607 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds