Wall clock time and date at job start Mon Mar 30 2020 06:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46862 * 2 1 4 4 H 1.08999 * 109.47185 * 305.00571 * 3 2 1 5 5 C 1.53002 * 109.46727 * 65.00750 * 3 2 1 6 6 C 1.50699 * 109.47004 * 184.99957 * 3 2 1 7 7 C 1.38236 * 119.99576 * 120.00251 * 6 3 2 8 8 C 1.38240 * 120.00058 * 179.97438 * 7 6 3 9 9 C 1.38232 * 119.99631 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99860 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47107 * 89.99965 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00575 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47138 * 90.00010 * 17 15 13 19 19 H 1.48502 * 109.46886 * 209.99874 * 17 15 13 20 20 H 1.48505 * 109.47112 * 329.99864 * 17 15 13 21 21 C 1.38234 * 120.00312 * 0.27932 * 9 8 7 22 22 C 1.38235 * 119.99933 * 359.51395 * 21 9 8 23 23 H 1.08993 * 109.47428 * 59.99278 * 1 2 3 24 24 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46688 * 299.99710 * 1 2 3 26 26 H 1.08999 * 109.46514 * 240.00736 * 2 1 3 27 27 H 1.08993 * 109.47428 * 120.00722 * 2 1 3 28 28 H 1.09006 * 109.47111 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47030 * 299.99732 * 5 3 2 30 30 H 1.08996 * 109.47378 * 59.99441 * 5 3 2 31 31 H 1.08002 * 120.00221 * 359.97438 * 7 6 3 32 32 H 1.07996 * 119.99763 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47152 * 330.00052 * 10 9 8 34 34 H 1.09001 * 109.46980 * 210.00152 * 10 9 8 35 35 H 1.00908 * 110.99847 * 56.05051 * 11 10 9 36 36 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 37 37 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 38 38 H 0.96998 * 120.00185 * 179.97438 * 16 15 13 39 39 H 1.07998 * 120.00015 * 179.72855 * 21 9 8 40 40 H 1.08002 * 120.00360 * 180.27290 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1265 1.3075 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0738 -1.1961 8 6 5.5239 2.0760 -1.3095 9 6 6.2973 1.4493 -0.3503 10 6 7.7992 1.4521 -0.4736 11 7 8.3444 2.6322 0.2107 12 6 9.8097 2.6680 0.1116 13 6 10.3315 3.8892 0.8239 14 1 9.6437 4.5703 1.3028 15 6 11.6873 4.1369 0.8643 16 7 12.5250 3.3072 0.2817 17 14 12.3343 5.6502 1.7479 18 1 12.6048 5.3157 3.1693 19 1 13.5905 6.1033 1.0984 20 1 11.3220 6.7346 1.6785 21 6 5.6928 0.8154 0.7191 22 6 4.3153 0.8169 0.8348 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 1.9990 3.1541 1.3077 29 1 0.5490 2.1251 1.3971 30 1 2.0699 1.5874 2.1492 31 1 3.5419 2.5638 -1.9452 32 1 5.9959 2.5680 -2.1469 33 1 8.0773 1.4823 -1.5271 34 1 8.2030 0.5485 -0.0170 35 1 8.0467 2.6610 1.1744 36 1 10.2270 1.7728 0.5725 37 1 10.1020 2.7064 -0.9379 38 1 13.4788 3.4817 0.3098 39 1 6.2969 0.3220 1.4661 40 1 3.8432 0.3255 1.6727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258821326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:45 Heat of formation + Delta-G solvation = -22.154476 kcal Electronic energy + Delta-G solvation = -17045.389030 eV Core-core repulsion = 14436.862904 eV Total energy + Delta-G solvation = -2608.526126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62064 -37.80198 -36.42196 -34.57831 -32.24804 -31.78492 -30.17213 -28.57439 -26.34117 -24.72659 -23.74265 -23.45015 -22.12096 -20.58108 -18.69599 -17.37760 -16.72234 -16.58906 -16.14523 -15.85259 -15.36730 -15.16416 -14.90554 -14.56563 -14.30017 -14.09971 -13.78489 -13.53495 -13.21786 -13.00131 -12.90050 -12.70498 -12.65608 -12.47287 -12.33501 -12.03462 -11.92682 -11.56695 -11.50402 -11.34530 -11.21132 -10.68726 -9.77100 -9.46531 -9.13074 -8.24649 -6.36435 0.44708 0.55760 1.40160 1.42192 1.54255 2.38834 2.84540 3.08386 3.68600 3.79512 3.84955 4.02548 4.11598 4.20216 4.22642 4.41994 4.53801 4.58205 4.64127 4.69315 4.72517 4.81187 4.83831 5.03737 5.06914 5.15117 5.16635 5.19862 5.21633 5.25534 5.27709 5.44532 5.52247 5.57994 5.60919 5.78758 5.80493 5.98229 6.16234 6.39757 6.65879 6.84485 7.34530 8.87021 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046949 B = 0.003445 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.242469 B = 8125.478882 C = 8363.273759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.048 4.048 4 H 0.082 0.918 5 C -0.144 4.144 6 C -0.081 4.081 7 C -0.123 4.123 8 C -0.110 4.110 9 C -0.091 4.091 10 C 0.098 3.902 11 N -0.682 5.682 12 C 0.208 3.792 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.975 3.025 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.122 4.122 22 C -0.115 4.115 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.334 0.666 36 H -0.038 1.038 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.121 0.879 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.881 -5.969 0.282 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.066 4.066 4 H 0.101 0.899 5 C -0.201 4.201 6 C -0.082 4.082 7 C -0.141 4.141 8 C -0.129 4.129 9 C -0.092 4.092 10 C -0.031 4.031 11 N -0.312 5.312 12 C 0.080 3.920 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.141 4.141 22 C -0.133 4.133 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.151 0.849 36 H -0.020 1.020 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.781 -5.587 -0.306 24.430 hybrid contribution 1.396 -0.169 0.734 1.586 sum -22.385 -5.756 0.428 23.117 Atomic orbital electron populations 1.21820 0.94652 1.02054 1.02348 1.21561 0.96601 0.94971 1.02005 1.20192 0.89270 0.97459 0.99668 0.89916 1.21892 1.02045 1.00013 0.96170 1.20125 0.96474 0.97196 0.94377 1.21259 0.93959 1.00120 0.98747 1.21124 0.94283 0.98510 0.98973 1.19809 0.94219 0.98924 0.96234 1.20847 0.91215 0.91642 0.99393 1.60620 1.10966 1.39871 1.19793 1.19241 0.83113 0.94552 0.95102 1.21523 0.92365 1.09030 1.34617 0.91857 1.25982 0.97052 1.00341 0.96357 1.70090 1.03258 1.38839 1.45247 0.85295 0.77669 0.78683 0.78424 1.19537 1.20530 1.18918 1.21170 0.95642 0.99888 0.97383 1.21089 0.92683 1.00039 0.99502 0.92466 0.92345 0.91848 0.92600 0.91801 0.93415 0.90687 0.92519 0.84397 0.86379 0.91650 0.95541 0.84914 1.01988 0.98061 0.92506 0.86088 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 71.98 0.70 -0.98 16 2 C -0.11 -1.62 5.14 30.60 0.16 -1.46 16 3 C -0.05 -0.77 2.56 -11.54 -0.03 -0.80 16 4 H 0.08 1.23 7.88 -2.39 -0.02 1.21 16 5 C -0.14 -2.15 8.76 71.98 0.63 -1.52 16 6 C -0.08 -1.80 4.78 -19.87 -0.09 -1.90 16 7 C -0.12 -3.00 9.67 22.27 0.22 -2.79 16 8 C -0.11 -3.28 9.70 22.27 0.22 -3.06 16 9 C -0.09 -2.96 5.39 -19.87 -0.11 -3.07 16 10 C 0.10 3.76 5.81 85.56 0.50 4.26 16 11 N -0.68 -31.25 6.48 -521.98 -3.38 -34.63 16 12 C 0.21 11.56 5.44 85.55 0.47 12.02 16 13 C -0.54 -31.56 9.32 25.60 0.24 -31.32 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 15 C 0.00 0.05 5.46 84.66 0.46 0.51 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.98 44.96 29.54 68.60 2.03 46.99 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 C -0.12 -3.46 9.70 22.27 0.22 -3.24 16 22 C -0.12 -2.71 8.76 22.27 0.20 -2.51 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.63 6.56 -2.38 -0.02 0.61 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.90 7.57 -2.39 -0.02 0.89 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 0.86 6.56 -2.39 -0.02 0.85 16 30 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 31 H 0.14 2.70 7.95 -2.91 -0.02 2.67 16 32 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 34 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.33 14.69 8.71 -89.69 -0.78 13.91 16 36 H -0.04 -2.22 8.14 -2.39 -0.02 -2.24 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 40 H 0.14 2.58 7.16 -2.91 -0.02 2.56 16 Total: -1.00 -65.20 327.84 2.90 -62.30 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.21 Total: 18.28 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.76 Total: -35.84 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -3.10 Total: -91.73 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.20 2.90 -62.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.144 kcal (2) G-P(sol) polarization free energy of solvation -65.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds