Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 C 1.50698 * 109.47342 * 185.00123 * 3 2 1 7 7 C 1.38286 * 119.91738 * 299.72792 * 6 3 2 8 8 C 1.38116 * 120.06886 * 179.72527 * 7 6 3 9 9 C 1.38908 * 119.92309 * 0.54418 * 8 7 6 10 10 N 1.39675 * 120.07533 * 179.70682 * 9 8 7 11 11 C 1.46503 * 120.00005 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47468 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.47292 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00096 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00238 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99846 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47027 * 60.00364 * 17 15 13 19 19 H 1.48505 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47372 * 299.99877 * 17 15 13 21 21 C 1.38914 * 119.85219 * 359.73033 * 9 8 7 22 22 C 1.38105 * 119.92354 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 24 24 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 27 27 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 28 28 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 29 29 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 31 31 H 1.07996 * 119.97146 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.03479 * 180.27463 * 8 7 6 33 33 H 0.96998 * 119.99944 * 180.02562 * 10 9 8 34 34 H 1.09007 * 109.47002 * 300.00357 * 11 10 9 35 35 H 1.09001 * 109.46680 * 59.99889 * 11 10 9 36 36 H 1.09007 * 109.46558 * 299.99821 * 12 11 10 37 37 H 1.08996 * 109.47182 * 59.99238 * 12 11 10 38 38 H 0.96995 * 120.00012 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.03729 * 179.97438 * 21 9 8 40 40 H 1.07997 * 119.95886 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5420 1.4443 -0.1239 7 6 4.3142 0.8208 0.8391 8 6 5.6907 0.8157 0.7257 9 6 6.2996 1.4476 -0.3511 10 7 7.6917 1.4496 -0.4657 11 6 8.5112 0.7844 0.5502 12 6 9.9907 0.9340 0.1902 13 6 10.8337 0.2492 1.2348 14 1 10.3614 -0.2431 2.0721 15 6 12.2078 0.2511 1.1217 16 7 12.7829 0.8510 0.1024 17 14 13.2527 -0.5972 2.4171 18 1 12.8993 -2.0385 2.4721 19 1 14.6887 -0.4521 2.0675 20 1 13.0010 0.0252 3.7417 21 6 5.5210 2.0778 -1.3136 22 6 4.1449 2.0739 -1.1973 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0699 1.5875 2.1492 29 1 1.9982 3.1543 1.3072 30 1 0.5490 2.1253 1.3969 31 1 3.8404 0.3339 1.6785 32 1 6.2931 0.3248 1.4757 33 1 8.1157 1.8915 -1.2179 34 1 8.3263 1.2412 1.5225 35 1 8.2518 -0.2735 0.5906 36 1 10.1759 0.4773 -0.7822 37 1 10.2497 1.9919 0.1499 38 1 13.7496 0.8526 0.0230 39 1 5.9913 2.5704 -2.1518 40 1 3.5390 2.5633 -1.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258821414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -10.003008 kcal Electronic energy + Delta-G solvation = -17039.166498 eV Core-core repulsion = 14431.167299 eV Total energy + Delta-G solvation = -2607.999199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.44403 -36.86709 -34.82486 -32.96722 -30.82113 -30.50814 -29.42070 -27.35863 -24.90458 -24.00903 -22.85447 -21.54605 -20.38034 -19.67769 -17.17169 -16.23421 -15.57943 -15.30060 -14.78186 -14.47230 -14.17149 -14.03956 -13.74091 -13.31827 -13.13204 -12.80713 -12.56495 -12.25518 -12.16268 -12.01122 -11.70307 -11.28789 -11.10709 -10.93006 -10.84864 -10.65884 -10.48635 -10.40753 -10.35078 -9.59889 -9.32568 -9.31830 -8.61071 -8.44751 -6.85569 -6.10823 -4.14365 1.76128 1.94428 3.28731 3.33089 3.35353 4.05545 4.17956 4.41691 4.73750 4.82372 5.00729 5.20213 5.25896 5.30574 5.35872 5.40740 5.47607 5.57427 5.71633 5.81887 5.83754 5.90570 5.95398 6.02740 6.06160 6.23471 6.28482 6.28727 6.28949 6.39271 6.67687 6.73684 6.77260 7.00478 7.22271 7.47546 7.61672 7.79386 7.95913 8.18759 8.36173 8.91408 9.50421 11.00829 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045497 B = 0.003413 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.272443 B = 8201.586549 C = 8557.167900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.040 4.040 4 H 0.069 0.931 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.064 4.064 8 C -0.200 4.200 9 C 0.225 3.775 10 N -0.741 5.741 11 C 0.126 3.874 12 C 0.014 3.986 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.207 4.207 22 C -0.069 4.069 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.397 0.603 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.132 1.220 -0.924 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.058 4.058 4 H 0.088 0.912 5 C -0.202 4.202 6 C -0.158 4.158 7 C -0.083 4.083 8 C -0.223 4.223 9 C 0.118 3.882 10 N -0.366 5.366 11 C 0.003 3.997 12 C -0.024 4.024 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.230 4.230 22 C -0.087 4.087 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.231 0.769 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.803 1.150 -0.832 20.852 hybrid contribution 0.975 -0.263 0.342 1.066 sum -19.828 0.888 -0.490 19.854 Atomic orbital electron populations 1.21845 0.96252 1.01316 1.01686 1.21601 0.95159 0.96415 1.02231 1.19967 0.91693 0.95927 0.98224 0.91247 1.21900 1.00519 1.00587 0.97155 1.19411 0.94488 1.04570 0.97344 1.20627 0.92793 0.97300 0.97534 1.20683 0.94811 1.06864 0.99987 1.18003 0.84396 0.92508 0.93246 1.45243 1.02090 1.60406 1.28902 1.21672 0.93104 0.95160 0.89815 1.19267 0.87622 0.97830 0.97648 1.21008 0.91241 1.35253 1.08739 0.92396 1.25008 0.98088 0.95399 0.95798 1.69949 1.10376 1.43244 1.29655 0.86574 0.79108 0.80076 0.81780 1.20099 1.21204 1.20107 1.20539 0.93770 1.07655 1.01056 1.20645 0.93709 0.97645 0.96749 0.92590 0.92952 0.93046 0.91979 0.91971 0.92649 0.92772 0.92797 0.86918 0.86155 0.76946 0.93392 0.93387 0.96037 0.96032 0.92750 0.86730 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -1.09 5.14 -26.73 -0.14 -1.23 16 3 C -0.04 -0.40 2.56 -91.77 -0.23 -0.64 16 4 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 5 C -0.14 -1.35 8.76 37.16 0.33 -1.02 16 6 C -0.16 -1.99 4.78 -104.59 -0.50 -2.49 16 7 C -0.06 -0.88 8.75 -39.61 -0.35 -1.23 16 8 C -0.20 -3.22 9.31 -39.38 -0.37 -3.58 16 9 C 0.23 3.77 6.65 -83.79 -0.56 3.21 16 10 N -0.74 -13.44 5.73 -58.63 -0.34 -13.77 16 11 C 0.13 2.60 4.85 -4.04 -0.02 2.58 16 12 C 0.01 0.35 5.09 -27.89 -0.14 0.20 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.21 -3.06 9.90 -39.38 -0.39 -3.45 16 22 C -0.07 -0.91 9.66 -39.62 -0.38 -1.29 16 23 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.59 7.58 -51.93 -0.39 0.20 16 28 H 0.05 0.52 7.37 -51.93 -0.38 0.14 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.43 6.56 -51.93 -0.34 0.08 16 31 H 0.11 1.35 7.15 -52.49 -0.38 0.97 16 32 H 0.12 1.95 6.74 -52.49 -0.35 1.60 16 33 H 0.40 6.83 8.49 -40.82 -0.35 6.49 16 34 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 35 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 36 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.23 7.94 -52.49 -0.42 0.81 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -28.89 324.69 -9.22 -38.11 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.68 Total: 3.15 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.80 Total: -23.02 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.40 Total: -39.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.89 -9.22 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.105 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds