Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09001 * 109.46922 * 305.00135 * 3 2 1 5 5 C 1.53006 * 109.47164 * 64.99887 * 3 2 1 6 6 C 1.50698 * 109.47342 * 185.00123 * 3 2 1 7 7 C 1.38286 * 119.91738 * 299.72792 * 6 3 2 8 8 C 1.38116 * 120.06886 * 179.72527 * 7 6 3 9 9 C 1.38908 * 119.92309 * 0.54418 * 8 7 6 10 10 N 1.39675 * 120.07533 * 179.70682 * 9 8 7 11 11 C 1.46503 * 120.00005 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47468 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.47292 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00096 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00238 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99846 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00051 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47027 * 60.00364 * 17 15 13 19 19 H 1.48505 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47372 * 299.99877 * 17 15 13 21 21 C 1.38914 * 119.85219 * 359.73033 * 9 8 7 22 22 C 1.38105 * 119.92354 * 359.97438 * 21 9 8 23 23 H 1.09000 * 109.46772 * 299.99985 * 1 2 3 24 24 H 1.08998 * 109.46554 * 60.00185 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46772 * 240.00015 * 2 1 3 27 27 H 1.08994 * 109.46772 * 120.00268 * 2 1 3 28 28 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 29 29 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 31 31 H 1.07996 * 119.97146 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.03479 * 180.27463 * 8 7 6 33 33 H 0.96998 * 119.99944 * 180.02562 * 10 9 8 34 34 H 1.09007 * 109.47002 * 300.00357 * 11 10 9 35 35 H 1.09001 * 109.46680 * 59.99889 * 11 10 9 36 36 H 1.09007 * 109.46558 * 299.99821 * 12 11 10 37 37 H 1.08996 * 109.47182 * 59.99238 * 12 11 10 38 38 H 0.96995 * 120.00012 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.03729 * 179.97438 * 21 9 8 40 40 H 1.07997 * 119.95886 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5420 1.4443 -0.1239 7 6 4.3142 0.8208 0.8391 8 6 5.6907 0.8157 0.7257 9 6 6.2996 1.4476 -0.3511 10 7 7.6917 1.4496 -0.4657 11 6 8.5112 0.7844 0.5502 12 6 9.9907 0.9340 0.1902 13 6 10.8337 0.2492 1.2348 14 1 10.3614 -0.2431 2.0721 15 6 12.2078 0.2511 1.1217 16 7 12.7829 0.8510 0.1024 17 14 13.2527 -0.5972 2.4171 18 1 12.8993 -2.0385 2.4721 19 1 14.6887 -0.4521 2.0675 20 1 13.0010 0.0252 3.7417 21 6 5.5210 2.0778 -1.3136 22 6 4.1449 2.0739 -1.1973 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0699 1.5875 2.1492 29 1 1.9982 3.1543 1.3072 30 1 0.5490 2.1253 1.3969 31 1 3.8404 0.3339 1.6785 32 1 6.2931 0.3248 1.4757 33 1 8.1157 1.8915 -1.2179 34 1 8.3263 1.2412 1.5225 35 1 8.2518 -0.2735 0.5906 36 1 10.1759 0.4773 -0.7822 37 1 10.2497 1.9919 0.1499 38 1 13.7496 0.8526 0.0230 39 1 5.9913 2.5704 -2.1518 40 1 3.5390 2.5633 -1.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258821414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -24.432677 kcal Electronic energy + Delta-G solvation = -17039.792215 eV Core-core repulsion = 14431.167299 eV Total energy + Delta-G solvation = -2608.624916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56784 -38.01304 -36.19154 -34.82134 -32.20695 -31.69148 -30.58100 -28.60382 -26.49315 -25.05699 -24.15290 -22.89496 -21.83503 -20.58345 -18.80349 -17.97404 -16.76469 -16.43179 -16.40701 -15.82815 -15.64766 -15.12033 -14.71094 -14.56850 -14.26913 -14.12889 -13.84433 -13.52608 -13.28616 -13.16264 -12.85200 -12.77542 -12.51035 -12.41986 -12.26799 -11.90581 -11.59003 -11.56723 -11.48118 -11.34200 -11.21938 -10.71191 -10.53170 -9.74740 -8.26131 -8.15501 -6.37844 0.61808 0.79090 1.40010 1.42993 1.50939 2.35867 2.70075 3.03710 3.08446 3.89773 3.98253 4.19757 4.22413 4.29162 4.41553 4.50776 4.58574 4.62858 4.65712 4.72667 4.82020 4.86279 4.87508 4.98070 5.13156 5.21722 5.21964 5.26797 5.29015 5.36500 5.47116 5.54977 5.55959 5.57709 5.67657 5.72086 5.93533 6.07873 6.13904 6.52447 6.76575 6.93578 7.32125 8.86117 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.045497 B = 0.003413 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.272443 B = 8201.586549 C = 8557.167900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.038 4.038 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.067 4.067 8 C -0.217 4.217 9 C 0.198 3.802 10 N -0.748 5.748 11 C 0.149 3.851 12 C 0.022 3.978 13 C -0.547 4.547 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.209 4.209 22 C -0.072 4.072 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.398 0.602 34 H 0.045 0.955 35 H 0.045 0.955 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.125 0.875 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.176 0.960 -0.279 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.056 4.056 4 H 0.099 0.901 5 C -0.200 4.200 6 C -0.149 4.149 7 C -0.086 4.086 8 C -0.240 4.240 9 C 0.093 3.907 10 N -0.377 5.377 11 C 0.025 3.975 12 C -0.015 4.015 13 C -0.585 4.585 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.232 4.232 22 C -0.090 4.090 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.232 0.768 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.898 0.892 -0.189 22.916 hybrid contribution 1.471 -0.152 0.097 1.482 sum -21.426 0.741 -0.092 21.439 Atomic orbital electron populations 1.21818 0.94754 1.01892 1.02322 1.21577 0.96464 0.95611 1.01666 1.20028 0.89590 0.96774 0.99249 0.90081 1.21889 1.01717 1.00023 0.96393 1.19817 0.96154 1.02611 0.96314 1.20842 0.91955 0.97327 0.98431 1.20794 0.95918 1.07401 0.99898 1.18220 0.83606 0.94244 0.94585 1.44985 1.02723 1.61315 1.28630 1.21170 0.90682 0.95295 0.90335 1.19091 0.90485 0.95810 0.96148 1.21475 0.92117 1.35472 1.09437 0.91730 1.25971 0.99553 0.96010 0.98033 1.70079 1.10800 1.44564 1.31614 0.85442 0.77085 0.79206 0.78989 1.19044 1.20782 1.19065 1.20764 0.94515 1.07127 1.00815 1.21010 0.93258 0.97328 0.97421 0.91872 0.92378 0.92589 0.92861 0.92308 0.92968 0.93279 0.91002 0.85201 0.87121 0.76797 0.93633 0.93635 0.98287 0.98275 0.92574 0.85660 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 71.99 0.70 -1.20 16 2 C -0.12 -1.89 5.14 30.60 0.16 -1.73 16 3 C -0.04 -0.66 2.56 -11.54 -0.03 -0.69 16 4 H 0.08 1.27 7.87 -2.39 -0.02 1.25 16 5 C -0.14 -2.27 8.76 71.98 0.63 -1.64 16 6 C -0.15 -3.45 4.78 -19.84 -0.09 -3.54 16 7 C -0.07 -1.77 8.75 22.25 0.19 -1.57 16 8 C -0.22 -6.97 9.31 22.40 0.21 -6.76 16 9 C 0.20 6.65 6.65 38.21 0.25 6.90 16 10 N -0.75 -27.95 5.73 -339.40 -1.95 -29.90 16 11 C 0.15 6.38 4.85 86.38 0.42 6.80 16 12 C 0.02 1.16 5.09 29.84 0.15 1.31 16 13 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.16 5.46 84.66 0.46 0.62 16 16 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 17 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 21 C -0.21 -6.00 9.90 22.40 0.22 -5.78 16 22 C -0.07 -1.74 9.66 22.25 0.21 -1.52 16 23 H 0.06 0.71 6.56 -2.39 -0.02 0.69 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.00 7.58 -2.39 -0.02 0.98 16 28 H 0.05 0.86 7.37 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.89 6.56 -2.39 -0.02 0.88 16 31 H 0.13 2.91 7.15 -2.91 -0.02 2.88 16 32 H 0.11 3.67 6.74 -2.91 -0.02 3.65 16 33 H 0.40 14.27 8.49 -92.71 -0.79 13.48 16 34 H 0.05 1.94 7.95 -2.38 -0.02 1.92 16 35 H 0.05 1.94 7.95 -2.39 -0.02 1.92 16 36 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.14 2.60 7.94 -2.91 -0.02 2.58 16 Total: -1.00 -62.11 324.69 4.30 -57.81 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.21 Total: 21.50 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.72 Total: -39.39 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.66 Total: -85.68 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.11 4.30 -57.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258821414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.378 kcal (2) G-P(sol) polarization free energy of solvation -62.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds