Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38236 * 119.99963 * 59.72884 * 6 3 2 8 8 C 1.38233 * 120.00041 * 179.78975 * 7 6 3 9 9 C 1.38230 * 120.00012 * 0.45477 * 8 7 6 10 10 C 1.50701 * 120.00201 * 179.78976 * 9 8 7 11 11 C 1.52998 * 109.47437 * 269.98568 * 10 9 8 12 12 N 1.46500 * 109.47095 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99708 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00376 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00026 * 180.02562 * 13 12 11 16 16 N 1.31628 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00291 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47010 * 59.99614 * 17 15 13 19 19 H 1.48498 * 109.46786 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46637 * 299.99532 * 17 15 13 21 21 C 1.38238 * 119.99756 * 359.77920 * 9 8 7 22 22 C 1.38229 * 120.00216 * 240.00128 * 6 3 2 23 23 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 24 24 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 27 27 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.08010 * 119.99941 * 359.97438 * 7 6 3 32 32 H 1.08003 * 120.00045 * 180.25701 * 8 7 6 33 33 H 1.09004 * 109.46692 * 29.98628 * 10 9 8 34 34 H 1.09002 * 109.47015 * 149.98449 * 10 9 8 35 35 H 1.09001 * 109.46755 * 299.99857 * 11 10 9 36 36 H 1.08996 * 109.47183 * 59.99526 * 11 10 9 37 37 H 0.96997 * 120.00228 * 359.97438 * 12 11 10 38 38 H 0.96993 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99697 * 180.02562 * 21 9 8 40 40 H 1.08002 * 120.00084 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3150 0.8117 -0.8317 8 6 5.6928 0.8170 -0.7204 9 6 6.2972 1.4468 0.3515 10 6 7.7991 1.4485 0.4754 11 6 8.2466 0.2219 1.2730 12 7 9.7066 0.2234 1.3929 13 6 10.3389 -0.7845 2.0708 14 1 9.7612 -1.5802 2.5174 15 6 11.7223 -0.7829 2.1849 16 7 12.4264 0.1872 1.6410 17 14 12.5850 -2.1581 3.1091 18 1 12.2800 -3.4582 2.4595 19 1 14.0515 -1.9258 3.0863 20 1 12.1091 -2.1837 4.5155 21 6 5.5239 2.0751 1.3097 22 6 4.1463 2.0734 1.1961 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 2.0700 1.5874 -2.1492 29 1 0.5490 2.1252 -1.3970 30 1 1.9982 3.1542 -1.3072 31 1 3.8426 0.3159 -1.6670 32 1 6.2970 0.3265 -1.4692 33 1 8.2457 1.4183 -0.5185 34 1 8.1201 2.3539 0.9906 35 1 7.8000 0.2522 2.2669 36 1 7.9255 -0.6834 0.7579 37 1 10.2255 0.9382 0.9921 38 1 13.3931 0.1881 1.7204 39 1 5.9961 2.5674 2.1470 40 1 3.5421 2.5641 1.9449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258829996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = 3.377787 kcal Electronic energy + Delta-G solvation = -17051.434390 eV Core-core repulsion = 14444.015425 eV Total energy + Delta-G solvation = -2607.418964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.64309 -36.67265 -34.86523 -32.55956 -30.81778 -30.76412 -29.42178 -27.25152 -24.86368 -23.53984 -22.74562 -21.79603 -20.76258 -19.71629 -17.13688 -16.23216 -15.60188 -15.10373 -14.70180 -14.56910 -14.14806 -13.65890 -13.49215 -13.45150 -13.21195 -12.94492 -12.91666 -12.32310 -12.16502 -11.90110 -11.53741 -11.27942 -11.08288 -10.92299 -10.89529 -10.72540 -10.68710 -10.50042 -10.42702 -10.05903 -9.67435 -8.84447 -8.74055 -8.28185 -6.88931 -5.73241 -3.01955 1.50856 1.57493 3.46699 3.50406 3.51962 3.90123 4.53506 4.62073 4.63752 4.85901 5.03889 5.13135 5.16476 5.20297 5.25697 5.32660 5.41489 5.55782 5.61288 5.63920 5.72432 5.77006 5.80957 5.84130 5.89104 5.99310 6.04755 6.11301 6.14587 6.24952 6.33610 6.38349 6.62998 6.73229 6.74011 6.88840 7.03998 7.19430 7.72840 8.45963 9.56654 10.14836 10.49972 11.49807 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044060 B = 0.003444 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.346974 B = 8128.685428 C = 8408.669298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.050 4.050 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.091 4.091 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.067 4.067 10 C -0.092 4.092 11 C 0.161 3.839 12 N -0.735 5.735 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.115 4.115 22 C -0.117 4.117 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.121 0.879 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.023 3.954 -5.163 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.068 4.068 4 H 0.092 0.908 5 C -0.202 4.202 6 C -0.091 4.091 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.067 4.067 10 C -0.130 4.130 11 C 0.034 3.966 12 N -0.379 5.379 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.739 3.261 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.133 4.133 22 C -0.136 4.136 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.139 0.861 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.983 3.803 -5.068 23.840 hybrid contribution 0.779 -0.532 0.420 1.032 sum -22.204 3.271 -4.648 22.920 Atomic orbital electron populations 1.21835 0.95928 1.01545 1.01780 1.21593 0.95507 0.95891 1.02453 1.20133 0.91313 0.96564 0.98785 0.90758 1.21890 1.00936 1.00547 0.96790 1.19750 0.94853 0.99042 0.95488 1.20886 0.93531 0.99931 0.98859 1.21082 0.94493 0.99468 0.98237 1.19972 0.96069 0.96433 0.94254 1.20826 0.89998 1.00363 1.01763 1.20589 0.86189 0.93819 0.96051 1.42378 1.00039 1.29464 1.66000 1.19204 0.89754 1.01778 1.26287 0.91241 1.24751 0.96276 0.98602 1.01472 1.69656 1.05732 1.33346 1.49668 0.86246 0.78588 0.81605 0.79644 1.21255 1.21662 1.21252 1.21078 0.93484 0.99883 0.98813 1.20976 0.94629 1.00214 0.97732 0.92536 0.92835 0.92826 0.91801 0.91786 0.92500 0.92407 0.92662 0.86595 0.86105 0.90995 0.90997 0.96308 0.96313 0.78291 0.93473 0.86087 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.15 0.36 -0.72 16 2 C -0.12 -1.00 5.14 -26.74 -0.14 -1.14 16 3 C -0.05 -0.45 2.56 -91.77 -0.24 -0.69 16 4 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 5 C -0.14 -1.17 8.76 37.16 0.33 -0.84 16 6 C -0.09 -1.06 4.78 -104.63 -0.50 -1.56 16 7 C -0.11 -1.39 8.76 -39.58 -0.35 -1.74 16 8 C -0.11 -1.60 9.70 -39.59 -0.38 -1.99 16 9 C -0.07 -1.02 5.13 -104.62 -0.54 -1.55 16 10 C -0.09 -1.59 5.46 -27.88 -0.15 -1.74 16 11 C 0.16 3.44 6.24 -4.04 -0.03 3.42 16 12 N -0.73 -19.45 5.60 -59.91 -0.34 -19.79 16 13 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.94 -28.91 13.06 55.49 0.72 -28.18 16 17 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.11 -1.60 9.70 -39.58 -0.38 -1.99 16 22 C -0.12 -1.45 9.67 -39.59 -0.38 -1.83 16 23 H 0.06 0.36 6.57 -51.92 -0.34 0.02 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.46 7.41 -51.93 -0.38 0.08 16 29 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.20 7.17 -52.48 -0.38 0.82 16 32 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 10.54 7.67 -40.82 -0.31 10.22 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 39 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.12 1.19 7.95 -52.49 -0.42 0.77 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -31.14 326.63 -9.10 -40.24 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.74 Total: 4.98 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.65 Total: -20.01 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.39 Total: -47.97 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.14 -9.10 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258829996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.616 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds