Wall clock time and date at job start Mon Mar 30 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38236 * 119.99963 * 59.72884 * 6 3 2 8 8 C 1.38233 * 120.00041 * 179.78975 * 7 6 3 9 9 C 1.38230 * 120.00012 * 0.45477 * 8 7 6 10 10 C 1.50701 * 120.00201 * 179.78976 * 9 8 7 11 11 C 1.52998 * 109.47437 * 269.98568 * 10 9 8 12 12 N 1.46500 * 109.47095 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99708 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00376 * 359.97438 * 13 12 11 15 15 C 1.38813 * 120.00026 * 180.02562 * 13 12 11 16 16 N 1.31628 * 119.99679 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00291 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47010 * 59.99614 * 17 15 13 19 19 H 1.48498 * 109.46786 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46637 * 299.99532 * 17 15 13 21 21 C 1.38238 * 119.99756 * 359.77920 * 9 8 7 22 22 C 1.38229 * 120.00216 * 240.00128 * 6 3 2 23 23 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 24 24 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 27 27 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.08010 * 119.99941 * 359.97438 * 7 6 3 32 32 H 1.08003 * 120.00045 * 180.25701 * 8 7 6 33 33 H 1.09004 * 109.46692 * 29.98628 * 10 9 8 34 34 H 1.09002 * 109.47015 * 149.98449 * 10 9 8 35 35 H 1.09001 * 109.46755 * 299.99857 * 11 10 9 36 36 H 1.08996 * 109.47183 * 59.99526 * 11 10 9 37 37 H 0.96997 * 120.00228 * 359.97438 * 12 11 10 38 38 H 0.96993 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.08003 * 119.99697 * 180.02562 * 21 9 8 40 40 H 1.08002 * 120.00084 * 359.97438 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3150 0.8117 -0.8317 8 6 5.6928 0.8170 -0.7204 9 6 6.2972 1.4468 0.3515 10 6 7.7991 1.4485 0.4754 11 6 8.2466 0.2219 1.2730 12 7 9.7066 0.2234 1.3929 13 6 10.3389 -0.7845 2.0708 14 1 9.7612 -1.5802 2.5174 15 6 11.7223 -0.7829 2.1849 16 7 12.4264 0.1872 1.6410 17 14 12.5850 -2.1581 3.1091 18 1 12.2800 -3.4582 2.4595 19 1 14.0515 -1.9258 3.0863 20 1 12.1091 -2.1837 4.5155 21 6 5.5239 2.0751 1.3097 22 6 4.1463 2.0734 1.1961 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 2.0700 1.5874 -2.1492 29 1 0.5490 2.1252 -1.3970 30 1 1.9982 3.1542 -1.3072 31 1 3.8426 0.3159 -1.6670 32 1 6.2970 0.3265 -1.4692 33 1 8.2457 1.4183 -0.5185 34 1 8.1201 2.3539 0.9906 35 1 7.8000 0.2522 2.2669 36 1 7.9255 -0.6834 0.7579 37 1 10.2255 0.9382 0.9921 38 1 13.3931 0.1881 1.7204 39 1 5.9961 2.5674 2.1470 40 1 3.5421 2.5641 1.9449 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258829996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:11 Heat of formation + Delta-G solvation = -12.673081 kcal Electronic energy + Delta-G solvation = -17052.130407 eV Core-core repulsion = 14444.015425 eV Total energy + Delta-G solvation = -2608.114982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63543 -37.72320 -36.52443 -34.18443 -32.34652 -31.78427 -30.46166 -28.55534 -26.14476 -24.93861 -23.77960 -23.28370 -21.97786 -20.57177 -19.23619 -17.24635 -16.75155 -16.56474 -16.02302 -15.57899 -15.42478 -15.19686 -14.89863 -14.78654 -14.34864 -14.08637 -13.82300 -13.31887 -13.14265 -12.88847 -12.86916 -12.59504 -12.47062 -12.39999 -12.29047 -12.13172 -11.89778 -11.83450 -11.52969 -11.45715 -11.25352 -10.96058 -9.77485 -9.35170 -9.05289 -7.97955 -5.28373 0.45915 0.54977 1.45804 1.49773 1.56094 2.54134 2.86651 3.35029 3.70331 3.82292 3.88870 4.07457 4.19200 4.21250 4.35956 4.37933 4.45399 4.53258 4.59652 4.62758 4.69287 4.72443 4.78385 4.82967 5.06325 5.12595 5.15434 5.16041 5.19370 5.24124 5.28563 5.29345 5.44098 5.44870 5.52525 5.61572 5.78972 5.82249 6.16788 6.24328 7.29940 8.03881 8.29217 9.25481 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044060 B = 0.003444 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.346974 B = 8128.685428 C = 8408.669298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.047 4.047 4 H 0.083 0.917 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.115 4.115 8 C -0.125 4.125 9 C -0.089 4.089 10 C -0.076 4.076 11 C 0.163 3.837 12 N -0.748 5.748 13 C -0.253 4.253 14 H 0.074 0.926 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.978 3.022 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.276 1.276 21 C -0.125 4.125 22 C -0.121 4.121 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.075 3.505 -5.112 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.066 4.066 4 H 0.101 0.899 5 C -0.200 4.200 6 C -0.086 4.086 7 C -0.133 4.133 8 C -0.143 4.143 9 C -0.089 4.089 10 C -0.114 4.114 11 C 0.037 3.963 12 N -0.391 5.391 13 C -0.385 4.385 14 H 0.092 0.908 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.806 3.194 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.202 1.202 21 C -0.143 4.143 22 C -0.139 4.139 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.141 0.859 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.079 3.346 -5.017 25.794 hybrid contribution 1.298 -0.378 0.385 1.405 sum -23.781 2.969 -4.632 24.409 Atomic orbital electron populations 1.21814 0.94586 1.02012 1.02403 1.21575 0.96674 0.95253 1.01863 1.20185 0.89346 0.97226 0.99819 0.89909 1.21880 1.02023 1.00076 0.95992 1.20119 0.96432 0.97467 0.94585 1.21117 0.92823 0.99750 0.99606 1.21204 0.95535 0.99549 0.98032 1.19815 0.94604 0.98695 0.95829 1.20595 0.91907 0.98186 1.00716 1.20678 0.83486 0.95685 0.96448 1.42595 1.02030 1.28730 1.65712 1.19613 0.90393 1.02328 1.26147 0.90838 1.25641 0.97017 1.01259 1.02801 1.69818 1.05713 1.35296 1.51197 0.85150 0.76981 0.78703 0.78565 1.20244 1.21773 1.20238 1.21201 0.94416 0.99995 0.98664 1.21256 0.94076 1.00107 0.98470 0.91658 0.92517 0.92450 0.91875 0.92954 0.92537 0.90791 0.93058 0.84622 0.85955 0.91237 0.91243 0.96597 0.96597 0.79327 0.93794 0.85929 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.02 16 2 C -0.12 -1.72 5.14 30.59 0.16 -1.56 16 3 C -0.05 -0.74 2.56 -11.54 -0.03 -0.77 16 4 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 5 C -0.14 -1.91 8.76 71.98 0.63 -1.28 16 6 C -0.09 -1.83 4.78 -19.87 -0.09 -1.92 16 7 C -0.12 -2.63 8.76 22.27 0.20 -2.44 16 8 C -0.13 -3.43 9.70 22.27 0.22 -3.21 16 9 C -0.09 -2.70 5.13 -19.87 -0.10 -2.80 16 10 C -0.08 -2.70 5.46 29.85 0.16 -2.53 16 11 C 0.16 7.10 6.24 86.38 0.54 7.64 16 12 N -0.75 -40.37 5.60 -343.46 -1.92 -42.29 16 13 C -0.25 -14.83 9.99 84.03 0.84 -13.99 16 14 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 16 N -0.97 -60.79 13.06 21.65 0.28 -60.50 16 17 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 C -0.12 -3.42 9.70 22.27 0.22 -3.21 16 22 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 23 H 0.06 0.63 6.57 -2.38 -0.02 0.62 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.94 7.56 -2.39 -0.02 0.92 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.76 7.41 -2.39 -0.02 0.75 16 29 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.14 2.51 7.17 -2.91 -0.02 2.49 16 32 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.07 2.44 8.09 -2.38 -0.02 2.42 16 34 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.37 21.18 7.67 -92.71 -0.71 20.47 16 38 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.14 2.50 7.95 -2.91 -0.02 2.48 16 Total: -1.00 -65.87 326.63 4.78 -61.09 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.28 Total: 26.24 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 4.11 Total: -33.62 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -1.64 Total: -102.80 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -65.87 4.78 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258829996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.418 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds