Wall clock time and date at job start Mon Mar 30 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47608 * 2 1 4 4 C 1.50699 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.92601 * 90.00578 * 4 3 2 6 6 C 1.38101 * 120.07653 * 180.02562 * 5 4 3 7 7 C 1.38912 * 119.92501 * 359.97438 * 6 5 4 8 8 N 1.39673 * 120.07610 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00111 * 0.02562 * 8 7 6 10 10 C 1.46504 * 120.00227 * 179.97438 * 8 7 6 11 11 C 1.53006 * 109.46883 * 90.00225 * 10 8 7 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46866 * 90.00390 * 16 14 12 18 18 H 1.48502 * 109.47245 * 210.00175 * 16 14 12 19 19 H 1.48494 * 109.47271 * 330.00312 * 16 14 12 20 20 C 1.38913 * 119.85192 * 0.25530 * 7 6 5 21 21 C 1.38111 * 119.92221 * 359.48740 * 20 7 6 22 22 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46928 * 300.00515 * 1 2 3 24 24 H 1.09000 * 109.46564 * 59.99420 * 1 2 3 25 25 H 1.09010 * 109.47044 * 239.99646 * 2 1 3 26 26 H 1.09001 * 109.47305 * 120.00620 * 2 1 3 27 27 H 1.08997 * 109.46982 * 60.00078 * 3 2 1 28 28 H 1.08998 * 109.46897 * 299.99979 * 3 2 1 29 29 H 1.07997 * 119.96152 * 0.03388 * 5 4 3 30 30 H 1.07995 * 120.04193 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47033 * 269.99798 * 9 8 7 32 32 H 1.09000 * 109.47241 * 29.99616 * 9 8 7 33 33 H 1.09000 * 109.47127 * 149.99375 * 9 8 7 34 34 H 1.09001 * 109.46891 * 330.00659 * 10 8 7 35 35 H 1.08993 * 109.47378 * 210.00031 * 10 8 7 36 36 H 1.09001 * 109.46801 * 300.00349 * 11 10 8 37 37 H 1.09001 * 109.46998 * 59.99945 * 11 10 8 38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.04325 * 179.72671 * 20 7 6 40 40 H 1.07999 * 119.96324 * 180.25535 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.2365 1.4425 -1.1994 6 6 5.6175 1.4418 -1.2036 7 6 6.3141 1.4414 -0.0018 8 7 7.7108 1.4402 -0.0024 9 6 8.4428 1.4398 -1.2714 10 6 8.4439 1.4403 1.2661 11 6 8.6979 -0.0022 1.7085 12 6 9.4525 -0.0021 3.0129 13 1 9.7235 0.9333 3.4799 14 6 9.7960 -1.1961 3.6107 15 7 9.4656 -2.3351 3.0422 16 14 10.7308 -1.1960 5.2279 17 1 9.7663 -1.1940 6.3572 18 1 11.5832 -2.4094 5.3071 19 1 11.5860 0.0155 5.3053 20 6 5.6185 1.4364 1.2006 21 6 4.2375 1.4425 1.1976 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 3.6942 1.4434 -2.1334 30 1 6.1553 1.4416 -2.1401 31 1 8.6235 0.4120 -1.5863 32 1 7.8539 1.9543 -2.0307 33 1 9.3957 1.9529 -1.1413 34 1 7.8556 1.9551 2.0256 35 1 9.3967 1.9532 1.1350 36 1 7.7450 -0.5151 1.8395 37 1 9.2862 -0.5170 0.9488 38 1 9.7076 -3.1751 3.4626 39 1 6.1570 1.4316 2.1368 40 1 3.6960 1.4427 2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258832644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:11 Heat of formation + Delta-G solvation = 5.236808 kcal Electronic energy + Delta-G solvation = -17440.211016 eV Core-core repulsion = 14832.872665 eV Total energy + Delta-G solvation = -2607.338351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31031 -36.65547 -34.37518 -33.06422 -30.90933 -30.29579 -29.35873 -26.73097 -25.61344 -23.57493 -22.11140 -21.60291 -20.81759 -19.55006 -16.98340 -16.36281 -15.51672 -14.89335 -14.61921 -14.55326 -14.11596 -13.91437 -13.42074 -13.25270 -13.18506 -12.53392 -12.29321 -12.20935 -11.95358 -11.89397 -11.64217 -11.36890 -11.14045 -10.95970 -10.73186 -10.65590 -10.60518 -10.30338 -9.97479 -9.83484 -9.19960 -8.95827 -8.47844 -8.37760 -6.62419 -6.02944 -4.07506 1.89832 2.04507 3.29751 3.36041 3.38675 3.75792 4.29461 4.43967 5.00289 5.01825 5.17855 5.25492 5.32432 5.36988 5.49400 5.56631 5.60720 5.78619 5.82504 5.87030 5.89537 5.97341 6.00469 6.03938 6.10597 6.26148 6.28795 6.37734 6.46734 6.48349 6.80876 6.84711 6.87572 7.13058 7.34021 7.60665 7.68324 7.80989 8.03191 8.12249 8.36757 9.00059 9.56990 11.07744 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.004781 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.341400 B = 5855.575514 C = 6670.900513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.160 4.160 5 C -0.072 4.072 6 C -0.209 4.209 7 C 0.227 3.773 8 N -0.627 5.627 9 C 0.097 3.903 10 C 0.124 3.876 11 C 0.009 3.991 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.189 4.189 21 C -0.068 4.068 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.128 0.872 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 7.602 -8.117 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.103 4.103 4 C -0.162 4.162 5 C -0.091 4.091 6 C -0.232 4.232 7 C 0.123 3.877 8 N -0.336 5.336 9 C -0.047 4.047 10 C 0.002 3.998 11 C -0.029 4.029 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.212 4.212 21 C -0.087 4.087 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.750 7.419 -8.099 16.084 hybrid contribution 0.685 -0.286 0.888 1.158 sum -11.065 7.133 -7.211 15.010 Atomic orbital electron populations 1.21796 0.96310 1.01348 1.01477 1.21552 0.94939 0.96933 1.02448 1.20414 0.91712 0.96482 1.01725 1.19467 0.94854 1.08740 0.93162 1.20593 0.93249 0.98372 0.96869 1.20580 0.94216 1.12172 0.96232 1.17896 0.83534 0.92528 0.93723 1.46840 1.01969 1.78216 1.06531 1.21542 0.96225 1.00949 0.85995 1.21843 0.94291 1.00888 0.82763 1.19451 0.97285 0.90162 0.95965 1.21125 1.36354 0.92418 1.06449 0.92592 1.25003 0.95974 0.95603 0.97621 1.69981 1.46618 0.97298 1.39138 0.86587 0.79889 0.77534 0.83951 1.20584 1.21202 1.19840 1.20839 0.94157 1.08995 0.97187 1.20710 0.93378 0.97618 0.97025 0.92978 0.92898 0.93008 0.92062 0.91847 0.91873 0.92019 0.87111 0.86637 0.93635 0.92241 0.91865 0.91871 0.92161 0.96113 0.96572 0.92940 0.85436 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 3 C -0.07 -0.76 5.34 -27.88 -0.15 -0.90 16 4 C -0.16 -2.31 5.14 -104.59 -0.54 -2.84 16 5 C -0.07 -1.04 9.69 -39.61 -0.38 -1.43 16 6 C -0.21 -3.33 9.21 -39.38 -0.36 -3.69 16 7 C 0.23 4.15 6.55 -83.79 -0.55 3.60 16 8 N -0.63 -11.68 3.01 -179.61 -0.54 -12.22 16 9 C 0.10 1.47 10.23 59.85 0.61 2.08 16 10 C 0.12 2.57 5.14 -4.04 -0.02 2.55 16 11 C 0.01 0.24 5.30 -27.88 -0.15 0.10 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.19 -3.46 9.20 -39.38 -0.36 -3.82 16 21 C -0.07 -1.09 9.69 -39.61 -0.38 -1.47 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.63 6.14 -52.49 -0.32 1.31 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.76 6.20 -51.93 -0.32 0.44 16 33 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 34 H 0.06 1.29 6.21 -51.93 -0.32 0.97 16 35 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 2.46 6.15 -52.49 -0.32 2.14 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -30.30 326.99 -9.10 -39.40 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.72 Total: -0.72 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.48 Total: -21.69 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.20 Total: -38.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.30 -9.10 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258832644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.636 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds