Wall clock time and date at job start Mon Mar 30 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47608 * 2 1 4 4 C 1.50699 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.38284 * 119.92601 * 90.00578 * 4 3 2 6 6 C 1.38101 * 120.07653 * 180.02562 * 5 4 3 7 7 C 1.38912 * 119.92501 * 359.97438 * 6 5 4 8 8 N 1.39673 * 120.07610 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00111 * 0.02562 * 8 7 6 10 10 C 1.46504 * 120.00227 * 179.97438 * 8 7 6 11 11 C 1.53006 * 109.46883 * 90.00225 * 10 8 7 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46866 * 90.00390 * 16 14 12 18 18 H 1.48502 * 109.47245 * 210.00175 * 16 14 12 19 19 H 1.48494 * 109.47271 * 330.00312 * 16 14 12 20 20 C 1.38913 * 119.85192 * 0.25530 * 7 6 5 21 21 C 1.38111 * 119.92221 * 359.48740 * 20 7 6 22 22 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46928 * 300.00515 * 1 2 3 24 24 H 1.09000 * 109.46564 * 59.99420 * 1 2 3 25 25 H 1.09010 * 109.47044 * 239.99646 * 2 1 3 26 26 H 1.09001 * 109.47305 * 120.00620 * 2 1 3 27 27 H 1.08997 * 109.46982 * 60.00078 * 3 2 1 28 28 H 1.08998 * 109.46897 * 299.99979 * 3 2 1 29 29 H 1.07997 * 119.96152 * 0.03388 * 5 4 3 30 30 H 1.07995 * 120.04193 * 179.97438 * 6 5 4 31 31 H 1.09003 * 109.47033 * 269.99798 * 9 8 7 32 32 H 1.09000 * 109.47241 * 29.99616 * 9 8 7 33 33 H 1.09000 * 109.47127 * 149.99375 * 9 8 7 34 34 H 1.09001 * 109.46891 * 330.00659 * 10 8 7 35 35 H 1.08993 * 109.47378 * 210.00031 * 10 8 7 36 36 H 1.09001 * 109.46801 * 300.00349 * 11 10 8 37 37 H 1.09001 * 109.46998 * 59.99945 * 11 10 8 38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.04325 * 179.72671 * 20 7 6 40 40 H 1.07999 * 119.96324 * 180.25535 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4423 -0.0006 5 6 4.2365 1.4425 -1.1994 6 6 5.6175 1.4418 -1.2036 7 6 6.3141 1.4414 -0.0018 8 7 7.7108 1.4402 -0.0024 9 6 8.4428 1.4398 -1.2714 10 6 8.4439 1.4403 1.2661 11 6 8.6979 -0.0022 1.7085 12 6 9.4525 -0.0021 3.0129 13 1 9.7235 0.9333 3.4799 14 6 9.7960 -1.1961 3.6107 15 7 9.4656 -2.3351 3.0422 16 14 10.7308 -1.1960 5.2279 17 1 9.7663 -1.1940 6.3572 18 1 11.5832 -2.4094 5.3071 19 1 11.5860 0.0155 5.3053 20 6 5.6185 1.4364 1.2006 21 6 4.2375 1.4425 1.1976 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 3.6942 1.4434 -2.1334 30 1 6.1553 1.4416 -2.1401 31 1 8.6235 0.4120 -1.5863 32 1 7.8539 1.9543 -2.0307 33 1 9.3957 1.9529 -1.1413 34 1 7.8556 1.9551 2.0256 35 1 9.3967 1.9532 1.1350 36 1 7.7450 -0.5151 1.8395 37 1 9.2862 -0.5170 0.9488 38 1 9.7076 -3.1751 3.4626 39 1 6.1570 1.4316 2.1368 40 1 3.6960 1.4427 2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258832644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:11 Heat of formation + Delta-G solvation = -9.576746 kcal Electronic energy + Delta-G solvation = -17440.853380 eV Core-core repulsion = 14832.872665 eV Total energy + Delta-G solvation = -2607.980715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59086 -37.97653 -35.63834 -34.91480 -32.47935 -31.60179 -30.76996 -28.01838 -27.16738 -25.08484 -23.52619 -22.85956 -22.11200 -20.88552 -18.69741 -18.14261 -16.77498 -16.59756 -16.08247 -15.66676 -15.37577 -15.32733 -14.64701 -14.54894 -14.33362 -14.16365 -13.99200 -13.47006 -13.32446 -13.06831 -12.86225 -12.83074 -12.74066 -12.51707 -12.05377 -11.91515 -11.80926 -11.67765 -11.62549 -11.39959 -11.25228 -10.60131 -10.36490 -9.73456 -8.25327 -7.97740 -6.36044 0.62905 0.78392 1.38910 1.40551 1.51665 2.30974 2.46351 3.03529 3.10471 3.97503 4.04937 4.11569 4.22158 4.28185 4.36516 4.45682 4.54131 4.57995 4.66682 4.72185 4.76443 4.84645 4.91356 4.94893 4.98987 5.03797 5.09979 5.21473 5.28949 5.33559 5.42590 5.50295 5.53130 5.57473 5.64865 5.76919 5.92532 6.08762 6.16799 6.50381 6.73855 6.82595 7.34142 8.89035 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.004781 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.341400 B = 5855.575514 C = 6670.900513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.063 4.063 4 C -0.154 4.154 5 C -0.072 4.072 6 C -0.209 4.209 7 C 0.199 3.801 8 N -0.639 5.639 9 C 0.094 3.906 10 C 0.141 3.859 11 C 0.022 3.978 12 C -0.543 4.543 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.259 1.259 20 C -0.217 4.217 21 C -0.078 4.078 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H -0.017 1.017 37 H -0.014 1.014 38 H 0.263 0.737 39 H 0.103 0.897 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 8.811 -8.697 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.100 4.100 4 C -0.156 4.156 5 C -0.090 4.090 6 C -0.231 4.231 7 C 0.097 3.903 8 N -0.349 5.349 9 C -0.049 4.049 10 C 0.018 3.982 11 C -0.016 4.016 12 C -0.582 4.582 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.239 4.239 21 C -0.097 4.097 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.001 0.999 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.840 8.647 -8.699 17.757 hybrid contribution 0.905 -0.687 1.013 1.522 sum -11.935 7.961 -7.685 16.275 Atomic orbital electron populations 1.21761 0.94523 1.01906 1.02347 1.21527 0.96508 0.96350 1.01466 1.20466 0.89326 0.97042 1.03162 1.19868 0.96677 1.06545 0.92514 1.21015 0.92847 0.96901 0.98251 1.20865 0.95050 1.11219 0.95999 1.18179 0.83498 0.94030 0.94639 1.46808 1.02384 1.79149 1.06511 1.21698 0.97092 1.00812 0.85258 1.21414 0.95224 0.97198 0.84344 1.19264 0.94470 0.92978 0.94880 1.21585 1.36329 0.93007 1.07262 0.91567 1.26006 0.96909 0.95090 1.01689 1.70131 1.48011 0.98085 1.41149 0.85405 0.78519 0.78039 0.78833 1.19828 1.20810 1.18301 1.20852 0.95373 1.11094 0.96595 1.20929 0.92596 0.97577 0.98560 0.92653 0.92390 0.91774 0.92465 0.93515 0.91051 0.89992 0.83826 0.84726 0.94798 0.89423 0.90683 0.91907 0.90935 0.99900 0.99562 0.92797 0.87860 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -2.42 5.92 30.59 0.18 -2.24 16 3 C -0.06 -1.27 5.34 29.85 0.16 -1.11 16 4 C -0.15 -4.17 5.14 -19.84 -0.10 -4.27 16 5 C -0.07 -1.90 9.69 22.25 0.22 -1.68 16 6 C -0.21 -6.35 9.21 22.40 0.21 -6.15 16 7 C 0.20 7.34 6.55 38.22 0.25 7.59 16 8 N -0.64 -24.18 3.01 -722.18 -2.17 -26.35 16 9 C 0.09 2.81 10.23 127.77 1.31 4.12 16 10 C 0.14 6.06 5.14 86.38 0.44 6.50 16 11 C 0.02 1.22 5.30 29.85 0.16 1.38 16 12 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 13 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 16 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 C -0.22 -8.22 9.20 22.40 0.21 -8.01 16 21 C -0.08 -2.48 9.69 22.25 0.22 -2.27 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 29 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.14 3.48 6.14 -2.91 -0.02 3.47 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 2.09 6.20 -2.39 -0.01 2.07 16 33 H 0.07 2.03 7.89 -2.39 -0.02 2.01 16 34 H 0.06 2.67 6.21 -2.39 -0.01 2.66 16 35 H 0.07 2.90 7.89 -2.39 -0.02 2.88 16 36 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.10 4.31 6.15 -2.91 -0.02 4.29 16 40 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -67.19 326.99 5.77 -61.42 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.98 Total: 14.37 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.65 Total: -38.09 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.89 Total: -84.17 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.19 5.77 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258832644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.843 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds