Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.38277 * 119.92630 * 269.72986 * 5 4 2 7 7 C 1.38107 * 120.07804 * 179.72478 * 6 5 4 8 8 C 1.38916 * 119.91810 * 0.54647 * 7 6 5 9 9 N 1.39668 * 120.07056 * 179.70773 * 8 7 6 10 10 C 1.46500 * 120.00361 * 0.02562 * 9 8 7 11 11 C 1.53007 * 109.47279 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47029 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99925 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99969 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99798 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47107 * 89.99832 * 16 14 12 18 18 H 1.48502 * 109.46885 * 209.99716 * 16 14 12 19 19 H 1.48495 * 109.47205 * 329.99653 * 16 14 12 20 20 C 1.38905 * 119.85091 * 359.72443 * 8 7 6 21 21 C 1.38103 * 119.93019 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 29 29 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 30 30 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 31 31 H 1.08008 * 119.96501 * 359.97438 * 6 5 4 32 32 H 1.07995 * 120.04314 * 180.27883 * 7 6 5 33 33 H 0.97009 * 120.00268 * 180.02562 * 9 8 7 34 34 H 1.08991 * 109.47278 * 300.00348 * 10 9 8 35 35 H 1.09005 * 109.46731 * 60.00281 * 10 9 8 36 36 H 1.09000 * 109.47376 * 300.00659 * 11 10 9 37 37 H 1.09008 * 109.46469 * 60.00301 * 11 10 9 38 38 H 0.97001 * 119.99708 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.03947 * 179.97438 * 20 8 7 40 40 H 1.08002 * 119.96767 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 2.4854 -3.0965 -0.5997 7 6 2.1207 -4.4271 -0.5376 8 6 0.9093 -4.8394 -1.0783 9 7 0.5400 -6.1853 -1.0227 10 6 1.4303 -7.1638 -0.3933 11 6 0.7933 -8.5531 -0.4652 12 6 1.7088 -9.5595 0.1828 13 1 2.6506 -9.2401 0.6042 14 6 1.3442 -10.8881 0.2377 15 7 2.1430 -11.7664 0.8037 16 14 -0.2843 -11.4406 -0.4918 17 1 -0.0885 -11.8100 -1.9167 18 1 -0.7894 -12.6175 0.2599 19 1 -1.2695 -10.3335 -0.3983 20 6 0.0663 -3.9103 -1.6745 21 6 0.4348 -2.5804 -1.7285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6444 -1.2952 31 1 3.4293 -2.7761 -0.1838 32 1 2.7783 -5.1469 -0.0732 33 1 -0.3060 -6.4722 -1.4009 34 1 2.3863 -7.1745 -0.9165 35 1 1.5900 -6.8913 0.6500 36 1 -0.1627 -8.5421 0.0583 37 1 0.6332 -8.8258 -1.5084 38 1 1.8866 -12.7011 0.8420 39 1 -0.8761 -4.2275 -2.0962 40 1 -0.2199 -1.8575 -2.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258926134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -7.490074 kcal Electronic energy + Delta-G solvation = -17067.770168 eV Core-core repulsion = 14459.879938 eV Total energy + Delta-G solvation = -2607.890230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44387 -36.90961 -35.10858 -32.99619 -31.12536 -30.57472 -29.07287 -27.26907 -25.84952 -24.21444 -22.59670 -21.04529 -20.35233 -19.94690 -17.22538 -16.65274 -15.58366 -15.45406 -14.60177 -14.43502 -14.29162 -14.18733 -13.71381 -13.55054 -13.12554 -12.84726 -12.62213 -12.51537 -12.33162 -11.97106 -11.62892 -11.48719 -11.33928 -10.99104 -10.79211 -10.67794 -10.54916 -10.44489 -10.07720 -9.93843 -9.37937 -9.36182 -8.65725 -8.63283 -6.93814 -6.13930 -4.13989 1.70366 1.87764 3.24237 3.32104 3.33964 3.96474 4.11190 4.36181 4.76610 4.81294 4.89921 5.11083 5.19580 5.23828 5.36529 5.42563 5.51829 5.58292 5.68346 5.71175 5.79269 5.81595 5.91935 5.97065 6.03287 6.14666 6.15668 6.20789 6.25788 6.32587 6.51723 6.64066 6.70104 6.95090 6.98176 7.21359 7.22660 7.59108 7.82894 8.16034 8.42064 8.89196 9.46798 10.99059 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.051935 B = 0.003487 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.010280 B = 8028.591854 C = 8297.780439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.063 4.063 5 C -0.156 4.156 6 C -0.067 4.067 7 C -0.198 4.198 8 C 0.224 3.776 9 N -0.745 5.745 10 C 0.134 3.866 11 C -0.021 4.021 12 C -0.523 4.523 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.207 4.207 21 C -0.067 4.067 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.395 0.605 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 22.624 -4.049 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.101 4.101 5 C -0.158 4.158 6 C -0.086 4.086 7 C -0.221 4.221 8 C 0.117 3.883 9 N -0.371 5.371 10 C 0.011 3.989 11 C -0.059 4.059 12 C -0.562 4.562 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.230 4.230 21 C -0.086 4.086 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.895 22.261 -3.894 22.784 hybrid contribution -1.134 -0.697 -0.461 1.409 sum -4.029 21.564 -4.355 22.366 Atomic orbital electron populations 1.21898 0.95366 1.02328 1.01006 1.21108 0.96054 0.95420 0.98542 1.21859 1.00824 0.96292 1.01489 1.20483 1.00380 0.91718 0.97497 1.19436 0.96285 0.95022 1.05085 1.20711 0.98397 0.92293 0.97202 1.20703 0.97368 0.96567 1.07473 1.17965 0.92972 0.84694 0.92623 1.45198 1.23428 1.04191 1.64281 1.21460 0.92790 0.88470 0.96190 1.19751 0.97271 0.91778 0.97102 1.20916 1.05646 0.91446 1.38162 0.90713 1.24998 0.96958 0.96601 0.94706 1.69903 1.36984 1.02685 1.44134 0.86748 0.84485 0.78422 0.79416 1.20214 1.21236 1.19108 1.20535 1.00970 0.93218 1.08262 1.20630 0.95499 0.94643 0.97814 0.93267 0.93087 0.91859 0.91208 0.92918 0.92831 0.92877 0.91829 0.91753 0.86791 0.86005 0.77154 0.92784 0.92772 0.96075 0.96513 0.92531 0.86804 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.76 37.16 0.33 -1.02 16 2 C -0.09 -0.84 2.91 -90.62 -0.26 -1.10 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C -0.06 -0.62 4.84 -27.88 -0.13 -0.75 16 5 C -0.16 -1.91 4.72 -104.59 -0.49 -2.40 16 6 C -0.07 -0.90 9.69 -39.61 -0.38 -1.29 16 7 C -0.20 -3.08 9.31 -39.38 -0.37 -3.44 16 8 C 0.22 3.56 6.65 -83.79 -0.56 3.01 16 9 N -0.74 -12.67 5.73 -58.63 -0.34 -13.00 16 10 C 0.13 2.65 4.85 -4.04 -0.02 2.63 16 11 C -0.02 -0.49 4.15 -27.88 -0.12 -0.61 16 12 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 16 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 20 C -0.21 -2.89 9.90 -39.38 -0.39 -3.27 16 21 C -0.07 -0.84 7.95 -39.61 -0.31 -1.15 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.66 6.26 -51.93 -0.33 0.33 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.93 6.73 -52.49 -0.35 1.58 16 33 H 0.39 6.19 8.49 -40.82 -0.35 5.84 16 34 H 0.05 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.05 1.09 7.95 -51.93 -0.41 0.67 16 36 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 37 H 0.02 0.38 7.57 -51.92 -0.39 -0.01 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.11 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -29.39 323.59 -9.00 -38.40 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.85 Total: 2.86 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -2.80 Total: -23.22 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.44 Total: -39.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.39 -9.00 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258926134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.910 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds