Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 5 5 C 1.50700 * 109.47526 * 294.99769 * 4 2 1 6 6 C 1.38277 * 119.92630 * 269.72986 * 5 4 2 7 7 C 1.38107 * 120.07804 * 179.72478 * 6 5 4 8 8 C 1.38916 * 119.91810 * 0.54647 * 7 6 5 9 9 N 1.39668 * 120.07056 * 179.70773 * 8 7 6 10 10 C 1.46500 * 120.00361 * 0.02562 * 9 8 7 11 11 C 1.53007 * 109.47279 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47029 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99925 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99969 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99798 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47107 * 89.99832 * 16 14 12 18 18 H 1.48502 * 109.46885 * 209.99716 * 16 14 12 19 19 H 1.48495 * 109.47205 * 329.99653 * 16 14 12 20 20 C 1.38905 * 119.85091 * 359.72443 * 8 7 6 21 21 C 1.38103 * 119.93019 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 29 29 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 30 30 H 1.09007 * 109.46669 * 175.00116 * 4 2 1 31 31 H 1.08008 * 119.96501 * 359.97438 * 6 5 4 32 32 H 1.07995 * 120.04314 * 180.27883 * 7 6 5 33 33 H 0.97009 * 120.00268 * 180.02562 * 9 8 7 34 34 H 1.08991 * 109.47278 * 300.00348 * 10 9 8 35 35 H 1.09005 * 109.46731 * 60.00281 * 10 9 8 36 36 H 1.09000 * 109.47376 * 300.00659 * 11 10 9 37 37 H 1.09008 * 109.46469 * 60.00301 * 11 10 9 38 38 H 0.97001 * 119.99708 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.03947 * 179.97438 * 20 8 7 40 40 H 1.08002 * 119.96767 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1890 6 6 2.4854 -3.0965 -0.5997 7 6 2.1207 -4.4271 -0.5376 8 6 0.9093 -4.8394 -1.0783 9 7 0.5400 -6.1853 -1.0227 10 6 1.4303 -7.1638 -0.3933 11 6 0.7933 -8.5531 -0.4652 12 6 1.7088 -9.5595 0.1828 13 1 2.6506 -9.2401 0.6042 14 6 1.3442 -10.8881 0.2377 15 7 2.1430 -11.7664 0.8037 16 14 -0.2843 -11.4406 -0.4918 17 1 -0.0885 -11.8100 -1.9167 18 1 -0.7894 -12.6175 0.2599 19 1 -1.2695 -10.3335 -0.3983 20 6 0.0663 -3.9103 -1.6745 21 6 0.4348 -2.5804 -1.7285 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6444 -1.2952 31 1 3.4293 -2.7761 -0.1838 32 1 2.7783 -5.1469 -0.0732 33 1 -0.3060 -6.4722 -1.4009 34 1 2.3863 -7.1745 -0.9165 35 1 1.5900 -6.8913 0.6500 36 1 -0.1627 -8.5421 0.0583 37 1 0.6332 -8.8258 -1.5084 38 1 1.8866 -12.7011 0.8420 39 1 -0.8761 -4.2275 -2.0962 40 1 -0.2199 -1.8575 -2.1923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258926134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -23.066712 kcal Electronic energy + Delta-G solvation = -17068.445622 eV Core-core repulsion = 14459.879938 eV Total energy + Delta-G solvation = -2608.565684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51949 -37.97347 -36.33860 -34.88714 -32.65922 -31.70502 -30.37997 -27.93417 -27.19872 -25.60425 -23.89747 -22.38536 -21.74552 -20.72306 -19.10282 -18.10239 -16.75022 -16.42868 -16.25795 -15.92358 -15.56932 -15.09267 -14.87588 -14.76545 -14.48388 -14.16426 -13.86150 -13.67666 -13.35219 -13.02228 -12.95123 -12.71850 -12.39831 -12.24832 -11.98973 -11.83325 -11.77633 -11.65056 -11.51183 -11.43893 -11.38167 -10.83133 -10.60580 -9.73089 -8.33735 -8.15596 -6.40023 0.61954 0.78510 1.35026 1.36837 1.48257 2.32886 2.63328 3.01377 3.03151 3.99212 4.01497 4.16071 4.19785 4.23805 4.32410 4.43996 4.49568 4.64478 4.65268 4.75017 4.82507 4.87363 4.91423 4.98276 5.08214 5.15425 5.16453 5.22306 5.24459 5.38094 5.39096 5.49296 5.51686 5.55902 5.58479 5.64567 5.93102 6.10175 6.18484 6.49818 6.66353 6.96477 7.24852 8.82775 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.051935 B = 0.003487 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.010280 B = 8028.591854 C = 8297.780439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.062 4.062 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.219 4.219 8 C 0.198 3.802 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.014 4.014 12 C -0.536 4.536 13 H 0.035 0.965 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.206 4.206 21 C -0.067 4.067 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.402 0.598 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.268 0.732 39 H 0.130 0.870 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 24.919 -5.502 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.099 4.099 5 C -0.149 4.149 6 C -0.094 4.094 7 C -0.242 4.242 8 C 0.094 3.906 9 N -0.376 5.376 10 C 0.028 3.972 11 C -0.051 4.051 12 C -0.575 4.575 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.588 5.588 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.168 1.168 20 C -0.228 4.228 21 C -0.085 4.085 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.237 0.763 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.811 24.610 -5.356 25.641 hybrid contribution -0.434 -1.269 0.028 1.341 sum -5.244 23.341 -5.327 24.509 Atomic orbital electron populations 1.21893 0.95249 1.01559 1.01853 1.21081 0.96132 0.96254 0.97554 1.21825 1.01076 0.95126 1.02114 1.20537 1.01016 0.89916 0.98425 1.19792 0.95732 0.96216 1.03171 1.20935 0.99393 0.91680 0.97395 1.20780 0.97580 0.97430 1.08371 1.18164 0.93804 0.84423 0.94220 1.44872 1.23364 1.04228 1.65102 1.20980 0.92648 0.87767 0.95760 1.19611 0.96443 0.92169 0.96916 1.21257 1.05156 0.92971 1.38106 0.94701 1.26013 1.01319 0.96617 0.95139 1.70059 1.39507 1.03259 1.45986 0.85589 0.79475 0.78416 0.78711 1.19094 1.20952 1.16829 1.20777 1.01168 0.93441 1.07453 1.20967 0.95790 0.94531 0.97213 0.92883 0.91883 0.93341 0.92528 0.92553 0.92466 0.92021 0.90418 0.91069 0.85361 0.87573 0.76319 0.93909 0.93968 0.95408 0.95510 0.92284 0.85192 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.76 71.98 0.63 -1.67 16 2 C -0.09 -1.44 2.91 -10.79 -0.03 -1.47 16 3 C -0.14 -1.78 9.19 71.98 0.66 -1.11 16 4 C -0.06 -1.02 4.84 29.85 0.14 -0.88 16 5 C -0.15 -3.29 4.72 -19.84 -0.09 -3.38 16 6 C -0.08 -1.96 9.69 22.25 0.22 -1.75 16 7 C -0.22 -6.87 9.31 22.40 0.21 -6.66 16 8 C 0.20 6.21 6.65 38.21 0.25 6.46 16 9 N -0.75 -25.10 5.73 -339.42 -1.95 -27.04 16 10 C 0.15 6.17 4.85 86.38 0.42 6.59 16 11 C -0.01 -0.63 4.15 29.85 0.12 -0.50 16 12 C -0.54 -30.80 9.66 25.60 0.25 -30.55 16 13 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 14 C 0.01 0.38 5.47 84.65 0.46 0.84 16 15 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 16 Si 0.96 43.54 27.47 68.60 1.88 45.42 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 20 C -0.21 -5.34 9.90 22.40 0.22 -5.12 16 21 C -0.07 -1.48 7.95 22.25 0.18 -1.30 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.89 6.26 -2.39 -0.01 0.88 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.07 1.11 8.08 -2.38 -0.02 1.09 16 31 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.11 3.57 6.73 -2.91 -0.02 3.55 16 33 H 0.40 12.08 8.49 -92.70 -0.79 11.29 16 34 H 0.04 1.79 7.95 -2.39 -0.02 1.77 16 35 H 0.04 1.77 7.95 -2.38 -0.02 1.75 16 36 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 37 H 0.03 1.18 7.57 -2.38 -0.02 1.16 16 38 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.14 2.35 8.04 -2.91 -0.02 2.33 16 Total: -1.00 -64.29 323.59 4.03 -60.26 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.15 Total: 20.80 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 3.64 Total: -40.51 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.65 Total: -85.97 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -64.29 4.03 -60.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258926134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.191 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds