Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09001 * 109.47502 * 305.00219 * 3 2 1 5 5 C 1.53006 * 109.47127 * 65.00062 * 3 2 1 6 6 C 1.50699 * 109.47078 * 184.99724 * 3 2 1 7 7 C 1.38290 * 119.92543 * 299.72937 * 6 3 2 8 8 C 1.38104 * 120.07407 * 179.72611 * 7 6 3 9 9 C 1.38915 * 119.92146 * 0.54752 * 8 7 6 10 10 N 1.39683 * 120.07001 * 179.75358 * 9 8 7 11 11 C 1.46499 * 119.99574 * 179.97438 * 10 9 8 12 12 C 1.46499 * 120.00111 * 359.97225 * 10 9 8 13 13 C 1.50699 * 109.47297 * 90.00401 * 12 10 9 14 14 H 1.08001 * 119.99293 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00038 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99964 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99777 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47159 * 59.99962 * 17 15 13 19 19 H 1.48506 * 109.47170 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47536 * 299.99965 * 17 15 13 21 21 C 1.38909 * 119.85494 * 359.72205 * 9 8 7 22 22 C 1.38109 * 119.92257 * 0.02562 * 21 9 8 23 23 H 1.09000 * 109.47227 * 300.00275 * 1 2 3 24 24 H 1.09006 * 109.46717 * 59.99823 * 1 2 3 25 25 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47218 * 240.00282 * 2 1 3 27 27 H 1.08998 * 109.46849 * 119.99880 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 30 30 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 31 31 H 1.07996 * 119.96305 * 359.97438 * 7 6 3 32 32 H 1.08000 * 120.04084 * 180.27132 * 8 7 6 33 33 H 1.08997 * 109.47601 * 89.99424 * 11 10 9 34 34 H 1.09005 * 109.46940 * 209.99607 * 11 10 9 35 35 H 1.09007 * 109.47141 * 329.99033 * 11 10 9 36 36 H 1.09006 * 109.46617 * 210.00361 * 12 10 9 37 37 H 1.09004 * 109.46635 * 330.00099 * 12 10 9 38 38 H 0.96996 * 119.99677 * 179.97438 * 16 15 13 39 39 H 1.07990 * 120.03927 * 179.97438 * 21 9 8 40 40 H 1.08000 * 119.95957 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 6 4.3142 0.8208 0.8391 8 6 5.6906 0.8157 0.7258 9 6 6.2995 1.4477 -0.3510 10 7 7.6916 1.4488 -0.4660 11 6 8.3321 2.1153 -1.6026 12 6 8.5111 0.7837 0.5500 13 6 8.7318 -0.6538 0.1552 14 1 8.3041 -1.0340 -0.7607 15 6 9.4790 -1.4839 0.9638 16 7 9.9994 -1.0209 2.0793 17 14 9.7519 -3.2659 0.4747 18 1 10.4493 -3.3184 -0.8354 19 1 10.5828 -3.9401 1.5045 20 1 8.4414 -3.9557 0.3658 21 6 5.5210 2.0778 -1.3135 22 6 4.1449 2.0746 -1.1968 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5489 2.1253 1.3969 29 1 2.0698 1.5875 2.1491 30 1 1.9989 3.1541 1.3076 31 1 3.8403 0.3339 1.6786 32 1 6.2930 0.3248 1.4758 33 1 8.5345 3.1554 -1.3470 34 1 9.2687 1.6104 -1.8392 35 1 7.6696 2.0759 -2.4673 36 1 9.4729 1.2904 0.6298 37 1 7.9993 0.8220 1.5117 38 1 10.5247 -1.6050 2.6483 39 1 5.9913 2.5703 -2.1516 40 1 3.5390 2.5640 -1.9450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258926203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = -4.917182 kcal Electronic energy + Delta-G solvation = -17773.557095 eV Core-core repulsion = 15165.778434 eV Total energy + Delta-G solvation = -2607.778661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57720 -38.16779 -35.98476 -34.64203 -31.88972 -31.34671 -29.76124 -29.11698 -26.81522 -25.43602 -24.01710 -23.23177 -21.66269 -20.33905 -18.63954 -18.14140 -16.94643 -16.26479 -16.10800 -15.57487 -15.36332 -15.30535 -14.58798 -14.48759 -14.27591 -13.96688 -13.64195 -13.45324 -13.15249 -13.07099 -12.85940 -12.76464 -12.68036 -12.53392 -12.40589 -12.17312 -11.81072 -11.65749 -11.51422 -11.32441 -11.16061 -10.64700 -10.29729 -9.66180 -8.35966 -7.77607 -6.38315 0.70581 0.89229 1.36335 1.38270 1.46656 2.33780 2.64243 3.05407 3.12854 3.93270 4.02094 4.21578 4.26055 4.30471 4.42841 4.59383 4.64874 4.68894 4.71216 4.75880 4.83531 4.87233 4.91771 4.99768 5.11533 5.13746 5.18253 5.23726 5.26594 5.30028 5.35211 5.51312 5.58674 5.61741 5.70327 5.75814 5.99992 6.06703 6.23629 6.50300 6.82280 6.94697 7.33649 8.82614 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022983 B = 0.005508 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.000799 B = 5082.383942 C = 5751.029910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.034 4.034 4 H 0.085 0.915 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.071 4.071 8 C -0.215 4.215 9 C 0.205 3.795 10 N -0.634 5.634 11 C 0.099 3.901 12 C 0.267 3.733 13 C -0.543 4.543 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.274 1.274 21 C -0.215 4.215 22 C -0.070 4.070 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.267 0.733 39 H 0.133 0.867 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 5.636 -5.713 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.053 4.053 4 H 0.104 0.896 5 C -0.199 4.199 6 C -0.154 4.154 7 C -0.089 4.089 8 C -0.238 4.238 9 C 0.101 3.899 10 N -0.342 5.342 11 C -0.044 4.044 12 C 0.145 3.855 13 C -0.582 4.582 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.199 1.199 21 C -0.238 4.238 22 C -0.089 4.089 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.545 5.601 -5.579 17.439 hybrid contribution 1.003 -1.109 0.252 1.517 sum -14.542 4.492 -5.326 16.125 Atomic orbital electron populations 1.21802 0.94403 1.01865 1.02453 1.21583 0.96698 0.95868 1.01347 1.19997 0.89456 0.96531 0.99289 0.89644 1.21881 1.01681 1.00032 0.96322 1.19761 0.96067 1.03088 0.96485 1.20753 0.91781 0.97794 0.98614 1.20789 0.95757 1.06970 1.00247 1.18225 0.83724 0.93753 0.94215 1.46939 1.02625 1.58131 1.26489 1.21588 0.98005 0.96202 0.88620 1.18755 0.88973 0.91029 0.86705 1.21748 1.32379 0.96738 1.07289 0.93340 1.25780 0.95051 1.03077 0.94693 1.70032 1.35279 1.37895 1.13435 0.85555 0.78245 0.79303 0.78260 1.19305 1.20266 1.19939 1.20811 0.94378 1.07919 1.00695 1.21005 0.93256 0.97366 0.97258 0.91813 0.92039 0.92690 0.93049 0.92972 0.90775 0.93550 0.93090 0.86243 0.88865 0.93003 0.92571 0.90363 0.97331 0.97270 0.92362 0.84962 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.12 -2.51 5.14 30.59 0.16 -2.35 16 3 C -0.03 -0.76 2.56 -11.54 -0.03 -0.79 16 4 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 5 C -0.14 -2.85 8.76 71.98 0.63 -2.22 16 6 C -0.15 -4.47 4.79 -19.84 -0.09 -4.57 16 7 C -0.07 -2.49 8.75 22.25 0.19 -2.30 16 8 C -0.21 -9.31 9.21 22.40 0.21 -9.10 16 9 C 0.21 8.64 6.55 38.21 0.25 8.89 16 10 N -0.63 -28.54 2.99 -726.53 -2.17 -30.71 16 11 C 0.10 3.52 10.19 127.77 1.30 4.82 16 12 C 0.27 14.38 4.91 85.63 0.42 14.80 16 13 C -0.54 -31.08 9.39 25.60 0.24 -30.84 16 14 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.01 0.75 5.46 84.65 0.46 1.22 16 16 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 17 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.22 -7.31 9.21 22.40 0.21 -7.10 16 22 C -0.07 -2.04 9.66 22.25 0.21 -1.83 16 23 H 0.06 0.92 6.56 -2.39 -0.02 0.91 16 24 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.21 7.58 -2.39 -0.02 1.19 16 28 H 0.07 1.17 6.57 -2.39 -0.02 1.16 16 29 H 0.05 1.01 7.37 -2.39 -0.02 0.99 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.12 3.83 7.15 -2.91 -0.02 3.81 16 32 H 0.09 4.65 6.14 -2.91 -0.02 4.63 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 35 H 0.08 2.37 6.20 -2.38 -0.01 2.35 16 36 H 0.01 0.49 8.07 -2.38 -0.02 0.47 16 37 H 0.01 0.54 6.20 -2.38 -0.01 0.53 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.13 3.88 6.14 -2.92 -0.02 3.86 16 40 H 0.14 3.14 7.94 -2.91 -0.02 3.12 16 Total: -1.00 -63.61 320.07 5.99 -57.62 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.00 Total: 14.36 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.86 Total: -33.07 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.89 Total: -85.53 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.61 5.99 -57.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258926203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.706 kcal (2) G-P(sol) polarization free energy of solvation -63.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds