Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38292 * 119.92152 * 59.73040 * 6 3 2 8 8 C 1.38105 * 120.06736 * 179.72577 * 7 6 3 9 9 C 1.38908 * 119.93173 * 0.54470 * 8 7 6 10 10 N 1.39668 * 120.08189 * 179.75156 * 9 8 7 11 11 C 1.46497 * 120.00712 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99522 * 359.97304 * 10 9 8 13 13 C 1.50702 * 109.46573 * 90.00224 * 12 10 9 14 14 H 1.07993 * 120.00177 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99261 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99645 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00536 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46724 * 89.99875 * 17 15 13 19 19 H 1.48494 * 109.47716 * 210.00222 * 17 15 13 20 20 H 1.48502 * 109.46827 * 330.00386 * 17 15 13 21 21 C 1.38914 * 119.84294 * 359.72443 * 9 8 7 22 22 C 1.38104 * 119.92960 * 0.02562 * 21 9 8 23 23 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 25 25 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 27 27 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.08001 * 119.96360 * 359.97103 * 7 6 3 32 32 H 1.08004 * 120.03377 * 180.26677 * 8 7 6 33 33 H 1.08994 * 109.47430 * 89.99142 * 11 10 9 34 34 H 1.08998 * 109.47558 * 209.99974 * 11 10 9 35 35 H 1.09007 * 109.46802 * 329.99854 * 11 10 9 36 36 H 1.08995 * 109.46743 * 210.00110 * 12 10 9 37 37 H 1.08999 * 109.47028 * 330.00139 * 12 10 9 38 38 H 0.96998 * 119.99911 * 180.02562 * 16 15 13 39 39 H 1.08009 * 120.03514 * 179.97438 * 21 9 8 40 40 H 1.08001 * 119.96004 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3138 0.8110 -0.8330 8 6 5.6906 0.8156 -0.7255 9 6 6.2996 1.4474 0.3513 10 7 7.6916 1.4495 0.4659 11 6 8.3321 2.1168 1.6019 12 6 8.5112 0.7842 -0.5500 13 6 8.8516 1.7654 -1.6421 14 1 8.4930 2.7824 -1.5853 15 6 9.6200 1.3641 -2.7143 16 7 9.9176 2.2204 -3.6671 17 14 10.2397 -0.3954 -2.8129 18 1 9.2445 -1.2310 -3.5316 19 1 11.5316 -0.4250 -3.5445 20 1 10.4354 -0.9288 -1.4409 21 6 5.5209 2.0777 1.3136 22 6 4.1448 2.0738 1.1973 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 2.0700 1.5874 -2.1492 29 1 0.5490 2.1252 -1.3970 30 1 1.9982 3.1542 -1.3072 31 1 3.8395 0.3158 -1.6674 32 1 6.2931 0.3246 -1.4755 33 1 8.4479 1.4079 2.4217 34 1 9.3120 2.4870 1.3006 35 1 7.7129 2.9522 1.9289 36 1 9.4296 0.4168 -0.0924 37 1 7.9561 -0.0528 -0.9736 38 1 10.4578 1.9380 -4.4216 39 1 5.9912 2.5695 2.1524 40 1 3.5389 2.5640 1.9450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258926205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = 13.711532 kcal Electronic energy + Delta-G solvation = -17796.149140 eV Core-core repulsion = 15189.178281 eV Total energy + Delta-G solvation = -2606.970859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.25047 -36.90723 -34.67304 -32.57679 -30.53050 -30.29497 -28.54978 -27.91838 -25.40230 -24.05124 -22.29140 -21.88413 -20.23087 -19.14683 -16.93929 -16.73534 -15.39189 -15.02870 -14.60425 -14.28053 -14.08049 -13.71287 -13.44519 -13.16288 -12.96142 -12.62266 -12.34566 -12.30518 -11.85410 -11.76353 -11.59437 -11.53545 -11.41532 -11.05444 -10.67495 -10.59609 -10.56037 -10.25767 -10.19127 -9.96721 -9.57112 -8.81313 -8.65574 -8.29195 -6.37258 -6.14461 -4.14414 2.07997 2.24654 3.21531 3.29390 3.30188 4.07288 4.32297 4.48697 4.92544 5.01163 5.16013 5.16912 5.40903 5.53912 5.56002 5.57960 5.66101 5.74055 5.80862 5.95527 5.97216 6.01307 6.06537 6.10014 6.12390 6.24779 6.29394 6.39692 6.46148 6.49387 6.57553 6.76844 6.77302 7.05830 7.09645 7.30202 7.53248 7.56252 8.06290 8.36246 8.52208 8.93281 9.45484 10.98608 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.005406 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.625486 B = 5177.737947 C = 5671.973306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.037 4.037 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.068 4.068 8 C -0.185 4.185 9 C 0.235 3.765 10 N -0.613 5.613 11 C 0.099 3.901 12 C 0.221 3.779 13 C -0.534 4.534 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.872 3.128 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.216 4.216 22 C -0.072 4.072 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.114 0.886 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.642 -3.292 8.736 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.056 4.056 4 H 0.085 0.915 5 C -0.202 4.202 6 C -0.162 4.162 7 C -0.086 4.086 8 C -0.207 4.207 9 C 0.129 3.871 10 N -0.319 5.319 11 C -0.045 4.045 12 C 0.100 3.900 13 C -0.573 4.573 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.699 3.301 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.239 4.239 22 C -0.091 4.091 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.276 -3.276 8.577 16.142 hybrid contribution 0.581 -0.742 -0.286 0.985 sum -12.695 -4.018 8.291 15.686 Atomic orbital electron populations 1.21843 0.96413 1.01150 1.01641 1.21598 0.94975 0.96649 1.02148 1.19932 0.91952 0.95661 0.98036 0.91476 1.21899 1.00225 1.00738 0.97304 1.19346 0.94224 1.05040 0.97618 1.20611 0.92874 0.97708 0.97445 1.20819 0.94530 1.05856 0.99544 1.17899 0.83754 0.92375 0.93029 1.46681 1.01998 1.57829 1.25393 1.21478 0.98505 0.96110 0.88370 1.19645 0.89935 0.93240 0.87214 1.21492 1.32669 0.98899 1.04241 0.90583 1.24901 0.95573 0.97223 0.95314 1.69904 1.38152 1.34747 1.10518 0.86911 0.78908 0.85509 0.78778 1.19908 1.20946 1.19023 1.20547 0.93647 1.08077 1.01630 1.20565 0.93687 0.98090 0.96781 0.93181 0.93030 0.92603 0.91971 0.92100 0.92589 0.93003 0.92748 0.87162 0.85512 0.94616 0.91319 0.92437 0.95486 0.95538 0.92517 0.86855 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.15 0.36 -1.05 16 2 C -0.12 -1.30 5.14 -26.74 -0.14 -1.44 16 3 C -0.04 -0.46 2.56 -91.77 -0.23 -0.70 16 4 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 5 C -0.14 -1.71 8.76 37.16 0.33 -1.38 16 6 C -0.16 -2.47 4.79 -104.59 -0.50 -2.97 16 7 C -0.07 -1.16 8.75 -39.61 -0.35 -1.51 16 8 C -0.19 -3.72 9.21 -39.38 -0.36 -4.09 16 9 C 0.24 4.76 6.55 -83.79 -0.55 4.21 16 10 N -0.61 -12.97 2.99 -181.00 -0.54 -13.51 16 11 C 0.10 1.73 10.19 59.85 0.61 2.33 16 12 C 0.22 5.24 3.98 -5.19 -0.02 5.22 16 13 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 14 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 17 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 21 C -0.22 -3.78 9.21 -39.38 -0.36 -4.14 16 22 C -0.07 -1.14 9.66 -39.62 -0.38 -1.52 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.49 6.57 -51.92 -0.34 0.15 16 26 H 0.06 0.72 7.55 -51.93 -0.39 0.32 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.06 0.69 7.40 -51.93 -0.38 0.30 16 29 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.69 7.15 -52.49 -0.38 1.32 16 32 H 0.13 2.74 6.14 -52.48 -0.32 2.42 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 36 H 0.03 0.64 7.13 -51.93 -0.37 0.26 16 37 H 0.03 0.63 5.62 -51.93 -0.29 0.34 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 39 H 0.11 1.78 6.14 -52.48 -0.32 1.46 16 40 H 0.11 1.42 7.94 -52.49 -0.42 1.00 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -29.88 316.47 -8.12 -38.00 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.41 Total: 1.30 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -2.04 Total: -20.36 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.23 Total: -39.82 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.88 -8.12 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258926205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.708 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds