Wall clock time and date at job start Mon Mar 30 2020 06:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38292 * 119.92152 * 59.73040 * 6 3 2 8 8 C 1.38105 * 120.06736 * 179.72577 * 7 6 3 9 9 C 1.38908 * 119.93173 * 0.54470 * 8 7 6 10 10 N 1.39668 * 120.08189 * 179.75156 * 9 8 7 11 11 C 1.46497 * 120.00712 * 179.97438 * 10 9 8 12 12 C 1.46509 * 119.99522 * 359.97304 * 10 9 8 13 13 C 1.50702 * 109.46573 * 90.00224 * 12 10 9 14 14 H 1.07993 * 120.00177 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99261 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99645 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00536 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46724 * 89.99875 * 17 15 13 19 19 H 1.48494 * 109.47716 * 210.00222 * 17 15 13 20 20 H 1.48502 * 109.46827 * 330.00386 * 17 15 13 21 21 C 1.38914 * 119.84294 * 359.72443 * 9 8 7 22 22 C 1.38104 * 119.92960 * 0.02562 * 21 9 8 23 23 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 25 25 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 27 27 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 28 28 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.08001 * 119.96360 * 359.97103 * 7 6 3 32 32 H 1.08004 * 120.03377 * 180.26677 * 8 7 6 33 33 H 1.08994 * 109.47430 * 89.99142 * 11 10 9 34 34 H 1.08998 * 109.47558 * 209.99974 * 11 10 9 35 35 H 1.09007 * 109.46802 * 329.99854 * 11 10 9 36 36 H 1.08995 * 109.46743 * 210.00110 * 12 10 9 37 37 H 1.08999 * 109.47028 * 330.00139 * 12 10 9 38 38 H 0.96998 * 119.99911 * 180.02562 * 16 15 13 39 39 H 1.08009 * 120.03514 * 179.97438 * 21 9 8 40 40 H 1.08001 * 119.96004 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3138 0.8110 -0.8330 8 6 5.6906 0.8156 -0.7255 9 6 6.2996 1.4474 0.3513 10 7 7.6916 1.4495 0.4659 11 6 8.3321 2.1168 1.6019 12 6 8.5112 0.7842 -0.5500 13 6 8.8516 1.7654 -1.6421 14 1 8.4930 2.7824 -1.5853 15 6 9.6200 1.3641 -2.7143 16 7 9.9176 2.2204 -3.6671 17 14 10.2397 -0.3954 -2.8129 18 1 9.2445 -1.2310 -3.5316 19 1 11.5316 -0.4250 -3.5445 20 1 10.4354 -0.9288 -1.4409 21 6 5.5209 2.0777 1.3136 22 6 4.1448 2.0738 1.1973 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 2.0700 1.5874 -2.1492 29 1 0.5490 2.1252 -1.3970 30 1 1.9982 3.1542 -1.3072 31 1 3.8395 0.3158 -1.6674 32 1 6.2931 0.3246 -1.4755 33 1 8.4479 1.4079 2.4217 34 1 9.3120 2.4870 1.3006 35 1 7.7129 2.9522 1.9289 36 1 9.4296 0.4168 -0.0924 37 1 7.9561 -0.0528 -0.9736 38 1 10.4578 1.9380 -4.4216 39 1 5.9912 2.5695 2.1524 40 1 3.5389 2.5640 1.9450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258926205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:11 Heat of formation + Delta-G solvation = -1.934479 kcal Electronic energy + Delta-G solvation = -17796.827602 eV Core-core repulsion = 15189.178281 eV Total energy + Delta-G solvation = -2607.649321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60748 -38.21246 -35.99477 -34.62907 -31.98409 -31.42798 -30.22153 -29.16046 -26.83649 -25.30723 -23.83776 -23.23611 -21.60492 -20.34972 -19.09228 -18.20151 -16.92481 -16.24462 -16.14507 -15.63719 -15.37947 -15.12175 -14.78412 -14.52960 -14.36317 -14.23051 -13.64351 -13.45838 -13.29886 -13.12723 -12.90590 -12.77757 -12.67005 -12.42405 -12.38170 -12.04026 -11.78132 -11.70496 -11.54036 -11.34364 -11.16990 -10.83365 -10.30252 -9.67760 -8.34709 -7.88657 -6.40121 0.68845 0.86870 1.33258 1.34003 1.44821 2.29430 2.54527 2.99158 3.10839 3.91694 4.00634 4.20170 4.22515 4.30521 4.40346 4.56483 4.62578 4.67224 4.68553 4.73761 4.77971 4.82807 4.87459 4.88912 4.99655 5.07888 5.13181 5.22926 5.25238 5.29673 5.31141 5.44560 5.50147 5.58426 5.62538 5.73180 5.98207 6.09022 6.23364 6.59103 6.69091 6.87449 7.25540 8.82852 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.005406 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.625486 B = 5177.737947 C = 5671.973306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.035 4.035 4 H 0.084 0.916 5 C -0.144 4.144 6 C -0.151 4.151 7 C -0.072 4.072 8 C -0.215 4.215 9 C 0.204 3.796 10 N -0.630 5.630 11 C 0.097 3.903 12 C 0.232 3.768 13 C -0.537 4.537 14 H 0.024 0.976 15 C 0.013 3.987 16 N -0.946 5.946 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.244 1.244 21 C -0.214 4.214 22 C -0.072 4.072 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.268 0.732 39 H 0.132 0.868 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -4.430 10.480 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.053 4.053 4 H 0.103 0.897 5 C -0.201 4.201 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.238 4.238 9 C 0.100 3.900 10 N -0.339 5.339 11 C -0.045 4.045 12 C 0.110 3.890 13 C -0.576 4.576 14 H 0.042 0.958 15 C -0.185 4.185 16 N -0.586 5.586 17 Si 0.769 3.231 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.167 1.167 21 C -0.237 4.237 22 C -0.090 4.090 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.222 -4.405 10.355 18.930 hybrid contribution 1.025 -0.271 -0.816 1.338 sum -14.197 -4.677 9.539 17.732 Atomic orbital electron populations 1.21809 0.94582 1.01932 1.02331 1.21565 0.96549 0.95509 1.01597 1.20004 0.89507 0.96851 0.98980 0.89730 1.21895 1.01707 0.99902 0.96604 1.19775 0.96109 1.02941 0.96456 1.20783 0.91895 0.97950 0.98427 1.20813 0.95765 1.07466 0.99721 1.18202 0.83652 0.93918 0.94210 1.46671 1.02430 1.58932 1.25829 1.21621 0.97900 0.97107 0.87898 1.19323 0.90654 0.92268 0.86799 1.21673 1.32324 0.97537 1.06069 0.95802 1.25868 0.95679 1.02375 0.94605 1.70067 1.39503 1.37490 1.11548 0.85730 0.78284 0.79146 0.79938 1.19064 1.20421 1.16693 1.20825 0.94376 1.07188 1.01312 1.21007 0.93310 0.97356 0.97344 0.92459 0.92117 0.92101 0.92753 0.92540 0.93563 0.90700 0.93609 0.86018 0.88247 0.92050 0.92606 0.90852 0.94667 0.95422 0.92289 0.84989 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 71.98 0.70 -1.57 16 2 C -0.11 -2.27 5.14 30.59 0.16 -2.11 16 3 C -0.04 -0.77 2.56 -11.54 -0.03 -0.80 16 4 H 0.08 1.60 7.87 -2.39 -0.02 1.58 16 5 C -0.14 -3.06 8.76 71.98 0.63 -2.43 16 6 C -0.15 -4.37 4.79 -19.84 -0.09 -4.47 16 7 C -0.07 -2.46 8.75 22.25 0.19 -2.26 16 8 C -0.21 -8.90 9.21 22.40 0.21 -8.70 16 9 C 0.20 8.31 6.55 38.21 0.25 8.56 16 10 N -0.63 -26.99 2.99 -726.56 -2.17 -29.17 16 11 C 0.10 3.33 10.19 127.77 1.30 4.63 16 12 C 0.23 11.22 3.98 85.63 0.34 11.56 16 13 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 14 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 15 C 0.01 0.74 5.47 84.66 0.46 1.21 16 16 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 17 Si 0.95 43.37 27.47 68.60 1.88 45.25 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 21 C -0.21 -7.16 9.21 22.40 0.21 -6.96 16 22 C -0.07 -2.06 9.66 22.25 0.21 -1.85 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.87 6.57 -2.38 -0.02 0.85 16 26 H 0.05 1.15 7.55 -2.39 -0.02 1.14 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 1.06 7.40 -2.39 -0.02 1.05 16 29 H 0.07 1.26 6.56 -2.39 -0.02 1.24 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.12 3.74 7.15 -2.91 -0.02 3.72 16 32 H 0.10 4.55 6.14 -2.91 -0.02 4.53 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 2.00 8.07 -2.39 -0.02 1.99 16 35 H 0.07 2.21 6.20 -2.38 -0.01 2.20 16 36 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16 37 H 0.03 1.33 5.62 -2.39 -0.01 1.32 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.13 3.82 6.14 -2.91 -0.02 3.81 16 40 H 0.14 3.12 7.94 -2.91 -0.02 3.09 16 Total: -1.00 -67.44 316.47 5.75 -61.69 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.94 Total: 17.66 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.79 Total: -36.30 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -1.87 Total: -88.31 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.88 Total: 45.25 kcal Total: -67.44 5.75 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258926205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.758 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds