Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.50706 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99754 * 179.76611 * 5 4 3 7 7 C 1.38234 * 120.00038 * 0.48818 * 6 5 4 8 8 C 1.50696 * 120.00185 * 179.77054 * 7 6 5 9 9 C 1.53000 * 109.46730 * 270.01952 * 8 7 6 10 10 N 1.46906 * 109.47077 * 179.97438 * 9 8 7 11 11 C 1.46897 * 111.00172 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47329 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99461 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00063 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00253 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47415 * 89.99269 * 16 14 12 18 18 H 1.48501 * 109.47361 * 209.99806 * 16 14 12 19 19 H 1.48501 * 109.46960 * 329.99476 * 16 14 12 20 20 C 1.38238 * 120.00047 * 359.78460 * 7 6 5 21 21 C 1.38235 * 120.00108 * 359.96171 * 20 7 6 22 22 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 24 24 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 25 25 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 26 26 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 27 27 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 28 28 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 29 29 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.99931 * 180.25459 * 6 5 4 31 31 H 1.09000 * 109.47119 * 30.01506 * 8 7 6 32 32 H 1.09000 * 109.47160 * 150.02459 * 8 7 6 33 33 H 1.09004 * 109.47390 * 299.99815 * 9 8 7 34 34 H 1.09005 * 109.47322 * 60.00173 * 9 8 7 35 35 H 1.00906 * 110.99890 * 303.95144 * 10 9 8 36 36 H 1.09001 * 109.47012 * 299.99761 * 11 10 9 37 37 H 1.09000 * 109.47143 * 59.99474 * 11 10 9 38 38 H 0.97007 * 120.00087 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.00559 * 179.97438 * 20 7 6 40 40 H 1.07999 * 120.00165 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2377 1.4484 1.1980 6 6 5.6201 1.4435 1.1986 7 6 6.3117 1.4428 0.0017 8 6 7.8187 1.4427 0.0022 9 6 8.3287 2.8852 0.0022 10 7 9.7978 2.8852 0.0034 11 6 10.3243 4.2565 0.0040 12 6 11.8308 4.2163 0.0045 13 1 12.3455 3.2669 0.0048 14 6 12.5517 5.3914 0.0057 15 7 11.9249 6.5476 0.0059 16 14 14.4191 5.3416 0.0071 17 1 14.9151 5.3290 -1.3926 18 1 14.9458 6.5401 0.7082 19 1 14.8810 4.1160 0.7070 20 6 5.6210 1.4426 -1.1958 21 6 4.2387 1.4422 -1.1963 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.6973 1.4526 2.1331 30 1 6.1597 1.4439 2.1341 31 1 8.1817 0.9290 0.8924 32 1 8.1823 0.9288 -0.8876 33 1 7.9658 3.3990 -0.8880 34 1 7.9651 3.3992 0.8921 35 1 10.1588 2.3593 0.7852 36 1 9.9755 4.7800 -0.8862 37 1 9.9740 4.7798 0.8938 38 1 12.4322 7.3744 0.0063 39 1 6.1613 1.4426 -2.1309 40 1 3.6990 1.4425 -2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258984046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -10.442226 kcal Electronic energy + Delta-G solvation = -16643.219813 eV Core-core repulsion = 14035.201568 eV Total energy + Delta-G solvation = -2608.018245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55168 -36.21470 -35.03005 -32.94800 -31.76422 -30.87386 -29.12929 -26.72125 -25.02967 -22.68257 -22.55566 -21.56919 -21.18406 -20.30958 -16.40995 -16.14421 -15.91353 -15.17095 -14.98307 -14.59611 -14.34574 -13.92103 -13.72137 -13.39715 -13.23051 -12.96513 -12.50420 -12.32520 -12.05980 -11.84173 -11.70255 -11.37839 -11.17361 -11.03820 -10.85264 -10.81574 -10.70994 -10.57910 -10.44467 -9.88704 -9.18923 -8.86612 -8.46565 -8.39491 -7.28417 -6.01760 -4.03921 1.38273 1.45956 3.33312 3.38729 3.42664 3.77633 4.44047 4.58436 4.66222 4.84378 4.91585 4.94136 5.05880 5.21504 5.22104 5.33935 5.46546 5.48652 5.51633 5.57143 5.64188 5.67769 5.72256 5.82248 5.89665 5.99580 6.02803 6.09868 6.19205 6.37511 6.48414 6.54518 6.62423 6.80728 7.07751 7.27530 7.44004 7.79767 8.14281 8.41073 8.63063 9.05475 9.60938 11.09389 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.070481 B = 0.002876 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.172614 B = 9735.036600 C = 9799.235326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.079 4.079 4 C -0.095 4.095 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.073 4.073 8 C -0.080 4.080 9 C 0.067 3.933 10 N -0.692 5.692 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.113 4.113 21 C -0.117 4.117 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.328 0.672 36 H 0.027 0.973 37 H -0.014 1.014 38 H 0.261 0.739 39 H 0.123 0.877 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 -12.230 0.759 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.095 4.095 5 C -0.135 4.135 6 C -0.134 4.134 7 C -0.074 4.074 8 C -0.118 4.118 9 C -0.063 4.063 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.131 4.131 21 C -0.135 4.135 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.144 0.856 36 H 0.045 0.955 37 H 0.004 0.996 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.400 -12.086 0.071 23.712 hybrid contribution 0.821 0.496 0.906 1.319 sum -19.579 -11.591 0.977 22.773 Atomic orbital electron populations 1.21794 0.95831 1.01605 1.01807 1.21514 0.95471 0.96281 1.02380 1.20605 0.91161 0.97160 1.02676 1.19818 0.95369 1.01013 0.93297 1.20967 0.94128 1.01109 0.97319 1.21068 0.94036 1.00469 0.97786 1.19995 0.96112 0.98266 0.93026 1.20650 0.89639 0.98380 1.03125 1.21833 0.90551 0.94022 0.99941 1.60686 1.04087 1.18615 1.48816 1.19551 0.94930 0.83059 0.95776 1.21196 0.91096 0.92684 1.50290 0.91929 1.25007 0.98935 0.95378 0.95373 1.69970 1.35587 0.97287 1.50938 0.86466 0.85179 0.77421 0.78130 1.20597 1.21309 1.19843 1.21094 0.93998 1.00143 0.97891 1.20984 0.94155 1.01023 0.97325 0.92762 0.92740 0.92732 0.91888 0.91915 0.91237 0.91202 0.86486 0.86205 0.91425 0.90319 0.91780 0.96387 0.85613 0.95457 0.99623 0.92914 0.85940 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 3 C -0.08 -0.67 5.35 -27.88 -0.15 -0.81 16 4 C -0.09 -1.04 5.13 -104.62 -0.54 -1.58 16 5 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 6 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 7 C -0.07 -1.01 5.13 -104.63 -0.54 -1.54 16 8 C -0.08 -1.18 5.60 -27.89 -0.16 -1.34 16 9 C 0.07 1.23 5.67 -3.82 -0.02 1.21 16 10 N -0.69 -15.28 6.49 -115.05 -0.75 -16.03 16 11 C 0.19 5.24 5.44 -4.98 -0.03 5.21 16 12 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 16 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.11 -1.45 9.70 -39.58 -0.38 -1.84 16 21 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 22 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.33 6.83 8.72 -39.29 -0.34 6.49 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 37 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -30.76 335.07 -10.22 -40.98 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.06 Total: 1.02 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.17 Total: -21.37 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.01 Total: -42.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.76 -10.22 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258984046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.537 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds