Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.50706 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99754 * 179.76611 * 5 4 3 7 7 C 1.38234 * 120.00038 * 0.48818 * 6 5 4 8 8 C 1.50696 * 120.00185 * 179.77054 * 7 6 5 9 9 C 1.53000 * 109.46730 * 270.01952 * 8 7 6 10 10 N 1.46906 * 109.47077 * 179.97438 * 9 8 7 11 11 C 1.46897 * 111.00172 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47329 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99461 * 359.97438 * 12 11 10 14 14 C 1.37867 * 120.00063 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00253 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47415 * 89.99269 * 16 14 12 18 18 H 1.48501 * 109.47361 * 209.99806 * 16 14 12 19 19 H 1.48501 * 109.46960 * 329.99476 * 16 14 12 20 20 C 1.38238 * 120.00047 * 359.78460 * 7 6 5 21 21 C 1.38235 * 120.00108 * 359.96171 * 20 7 6 22 22 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 24 24 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 25 25 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 26 26 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 27 27 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 28 28 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 29 29 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.99931 * 180.25459 * 6 5 4 31 31 H 1.09000 * 109.47119 * 30.01506 * 8 7 6 32 32 H 1.09000 * 109.47160 * 150.02459 * 8 7 6 33 33 H 1.09004 * 109.47390 * 299.99815 * 9 8 7 34 34 H 1.09005 * 109.47322 * 60.00173 * 9 8 7 35 35 H 1.00906 * 110.99890 * 303.95144 * 10 9 8 36 36 H 1.09001 * 109.47012 * 299.99761 * 11 10 9 37 37 H 1.09000 * 109.47143 * 59.99474 * 11 10 9 38 38 H 0.97007 * 120.00087 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.00559 * 179.97438 * 20 7 6 40 40 H 1.07999 * 120.00165 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2377 1.4484 1.1980 6 6 5.6201 1.4435 1.1986 7 6 6.3117 1.4428 0.0017 8 6 7.8187 1.4427 0.0022 9 6 8.3287 2.8852 0.0022 10 7 9.7978 2.8852 0.0034 11 6 10.3243 4.2565 0.0040 12 6 11.8308 4.2163 0.0045 13 1 12.3455 3.2669 0.0048 14 6 12.5517 5.3914 0.0057 15 7 11.9249 6.5476 0.0059 16 14 14.4191 5.3416 0.0071 17 1 14.9151 5.3290 -1.3926 18 1 14.9458 6.5401 0.7082 19 1 14.8810 4.1160 0.7070 20 6 5.6210 1.4426 -1.1958 21 6 4.2387 1.4422 -1.1963 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.6973 1.4526 2.1331 30 1 6.1597 1.4439 2.1341 31 1 8.1817 0.9290 0.8924 32 1 8.1823 0.9288 -0.8876 33 1 7.9658 3.3990 -0.8880 34 1 7.9651 3.3992 0.8921 35 1 10.1588 2.3593 0.7852 36 1 9.9755 4.7800 -0.8862 37 1 9.9740 4.7798 0.8938 38 1 12.4322 7.3744 0.0063 39 1 6.1613 1.4426 -2.1309 40 1 3.6990 1.4425 -2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258984046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -27.250759 kcal Electronic energy + Delta-G solvation = -16643.948686 eV Core-core repulsion = 14035.201568 eV Total energy + Delta-G solvation = -2608.747118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48322 -37.63534 -36.15503 -34.76376 -33.13518 -31.79415 -30.40647 -28.29441 -26.30924 -24.00120 -23.60837 -23.11461 -22.32690 -21.26003 -18.57638 -17.15286 -16.97781 -16.62810 -16.27817 -16.02821 -15.41769 -15.10420 -14.87815 -14.48839 -14.28012 -14.14677 -13.97025 -13.82035 -13.27604 -12.91258 -12.89866 -12.76847 -12.56689 -12.37148 -12.17723 -12.05739 -11.89334 -11.73412 -11.60284 -11.46357 -11.30082 -10.67832 -9.79976 -9.37175 -9.17795 -8.24089 -6.36197 0.42994 0.52570 1.41027 1.43477 1.54756 2.39347 2.82590 3.08937 3.52398 3.87148 3.89382 4.08651 4.15451 4.20715 4.26955 4.29090 4.39796 4.56304 4.57754 4.62571 4.67550 4.83180 4.90505 4.96130 5.03391 5.04764 5.10397 5.16691 5.21289 5.23813 5.31783 5.32872 5.47208 5.55186 5.59881 5.75163 5.78465 5.99000 6.15607 6.40311 6.69209 6.86728 7.35025 8.87763 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.070481 B = 0.002876 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.172614 B = 9735.036600 C = 9799.235326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.065 4.065 9 C 0.071 3.929 10 N -0.689 5.689 11 C 0.207 3.793 12 C -0.537 4.537 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.978 3.022 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.261 1.261 20 C -0.125 4.125 21 C -0.123 4.123 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.337 0.663 36 H -0.003 1.003 37 H -0.040 1.040 38 H 0.266 0.734 39 H 0.125 0.875 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 -13.286 0.952 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.114 4.114 4 C -0.094 4.094 5 C -0.141 4.141 6 C -0.144 4.144 7 C -0.095 4.095 8 C -0.102 4.102 9 C -0.059 4.059 10 N -0.320 5.320 11 C 0.079 3.921 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.801 3.199 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.185 1.185 20 C -0.143 4.143 21 C -0.141 4.141 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.155 0.845 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.154 0.846 36 H 0.015 0.985 37 H -0.023 1.023 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.853 -13.169 0.267 24.665 hybrid contribution 0.836 0.822 0.841 1.443 sum -20.017 -12.347 1.109 23.545 Atomic orbital electron populations 1.21777 0.94732 1.02103 1.02225 1.21480 0.96391 0.95484 1.02027 1.20651 0.89302 0.97950 1.03483 1.20171 0.96850 0.99421 0.92921 1.21249 0.93774 1.00593 0.98513 1.21245 0.94874 1.00546 0.97722 1.19935 0.95270 1.00359 0.93923 1.20453 0.90731 0.95399 1.03659 1.21853 0.88203 0.96795 0.99044 1.60561 1.06388 1.15726 1.49297 1.19211 0.94682 0.85101 0.93070 1.21553 0.92036 0.93174 1.50754 0.91474 1.26027 1.04699 0.94789 0.94482 1.70104 1.37904 0.98122 1.51439 0.85262 0.78120 0.77958 0.78514 1.19780 1.20631 1.18546 1.21257 0.94875 1.00402 0.97800 1.21252 0.93750 1.00560 0.98540 0.92269 0.92318 0.92336 0.92287 0.92273 0.90426 0.90437 0.84515 0.85585 0.90378 0.90263 0.92992 0.96912 0.84578 0.98457 1.02274 0.92554 0.85659 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 3 C -0.08 -1.13 5.35 29.85 0.16 -0.97 16 4 C -0.09 -1.90 5.13 -19.86 -0.10 -2.00 16 5 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 6 C -0.13 -3.11 9.70 22.27 0.22 -2.89 16 7 C -0.09 -2.55 5.13 -19.87 -0.10 -2.65 16 8 C -0.06 -1.90 5.60 29.85 0.17 -1.73 16 9 C 0.07 2.66 5.67 86.30 0.49 3.15 16 10 N -0.69 -30.93 6.49 -517.91 -3.36 -34.29 16 11 C 0.21 11.59 5.44 85.56 0.47 12.05 16 12 C -0.54 -31.42 9.32 25.60 0.24 -31.18 16 13 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.94 -57.74 13.29 21.44 0.28 -57.45 16 16 Si 0.98 44.82 29.54 68.60 2.03 46.85 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 C -0.13 -3.15 9.70 22.27 0.22 -2.94 16 21 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 22 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 32 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 33 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.34 14.07 8.72 -89.69 -0.78 13.28 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 37 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 38 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -65.86 335.07 2.69 -63.18 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.20 Total: 17.60 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.54 Total: -35.88 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.08 Total: -91.75 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.86 2.69 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258984046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.928 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds