Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99672 * 2 1 4 4 H 1.09000 * 109.47064 * 185.65158 * 3 2 1 5 5 C 1.50703 * 109.47053 * 305.64774 * 3 2 1 6 6 H 1.07994 * 120.00334 * 120.00112 * 5 3 2 7 7 C 1.37880 * 119.99707 * 300.00192 * 5 3 2 8 8 N 1.31513 * 120.00629 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99587 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47475 * 90.00136 * 9 7 5 11 11 H 1.48508 * 109.47209 * 209.99689 * 9 7 5 12 12 H 1.48496 * 109.47366 * 329.99768 * 9 7 5 13 13 C 1.50701 * 109.47384 * 65.64674 * 3 2 1 14 14 C 1.38235 * 119.99737 * 29.97650 * 13 3 2 15 15 C 1.38230 * 120.00126 * 179.97438 * 14 13 3 16 16 C 1.38237 * 119.99659 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00096 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47039 * 89.99961 * 17 16 15 19 19 C 1.52992 * 109.47359 * 65.00224 * 18 17 16 20 20 C 1.53002 * 109.46961 * 185.00519 * 18 17 16 21 21 C 1.38232 * 120.00372 * 0.27612 * 16 15 14 22 22 C 1.38232 * 120.00273 * 209.95351 * 13 3 2 23 23 H 1.09007 * 109.46616 * 185.11347 * 1 2 3 24 24 H 1.08996 * 109.47524 * 305.11367 * 1 2 3 25 25 H 1.08997 * 109.47156 * 65.11494 * 1 2 3 26 26 H 1.00900 * 111.00009 * 236.04578 * 2 1 3 27 27 H 0.96996 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08008 * 120.00043 * 359.97438 * 14 13 3 29 29 H 1.08000 * 120.00501 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46665 * 330.00414 * 17 16 15 31 31 H 1.08993 * 109.47321 * 209.99877 * 17 16 15 32 32 H 1.09008 * 109.47035 * 304.99762 * 18 17 16 33 33 H 1.08995 * 109.47062 * 59.99823 * 19 18 17 34 34 H 1.09000 * 109.47514 * 180.02562 * 19 18 17 35 35 H 1.08996 * 109.47280 * 300.00065 * 19 18 17 36 36 H 1.08997 * 109.47326 * 60.00171 * 20 18 17 37 37 H 1.09008 * 109.47007 * 180.02562 * 20 18 17 38 38 H 1.08996 * 109.47297 * 299.99514 * 20 18 17 39 39 H 1.07999 * 120.00555 * 179.72482 * 21 16 15 40 40 H 1.08004 * 119.99790 * 359.97438 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 3.0803 1.3442 -0.1012 5 6 1.4023 2.1372 -1.1546 6 1 0.8181 3.0264 -0.9697 7 6 1.6055 1.7023 -2.4471 8 7 2.3173 0.6197 -2.6725 9 14 0.8709 2.6518 -3.8783 10 1 1.8372 3.6819 -4.3370 11 1 0.5775 1.7168 -4.9941 12 1 -0.3858 3.3114 -3.4418 13 6 1.6284 2.0505 1.2944 14 6 1.4854 1.3049 2.4496 15 6 1.1494 1.9276 3.6370 16 6 0.9568 3.2962 3.6693 17 6 0.5909 3.9753 4.9639 18 6 1.8662 4.3950 5.6977 19 6 2.6007 5.4570 4.8772 20 6 1.5004 4.9713 7.0671 21 6 1.0946 4.0411 2.5130 22 6 1.4352 3.4188 1.3266 23 1 -0.3633 -1.0237 0.0916 24 1 -0.3634 0.5911 0.8406 25 1 -0.3633 0.4324 -0.9322 26 1 1.8306 -0.5261 -0.7814 27 1 2.4606 0.3140 -3.5819 28 1 1.6363 0.2357 2.4244 29 1 1.0372 1.3451 4.5395 30 1 0.0229 3.2855 5.5881 31 1 -0.0140 4.8571 4.7533 32 1 2.5119 3.5268 5.8297 33 1 1.9550 6.3251 4.7452 34 1 3.5095 5.7557 5.3997 35 1 2.8613 5.0464 3.9017 36 1 0.9771 4.2147 7.6517 37 1 2.4089 5.2708 7.5897 38 1 0.8547 5.8395 6.9352 39 1 0.9398 5.1096 2.5373 40 1 1.5477 4.0014 0.4241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259096528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = 0.245576 kcal Electronic energy + Delta-G solvation = -18047.917969 eV Core-core repulsion = 15440.363182 eV Total energy + Delta-G solvation = -2607.554787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.05057 -36.56607 -34.88957 -31.86196 -30.83354 -30.05851 -27.55758 -27.08207 -25.32932 -24.22714 -21.79627 -21.68118 -19.92738 -19.33751 -16.38640 -15.82374 -15.05499 -14.84670 -14.34271 -14.20380 -14.09194 -13.80748 -13.25102 -12.73962 -12.59745 -12.50956 -12.20657 -12.00379 -11.79342 -11.64566 -11.38564 -11.06970 -10.93390 -10.79231 -10.66654 -10.57507 -10.39179 -10.22027 -10.15991 -9.57611 -9.48029 -8.62105 -8.08911 -7.56944 -7.03733 -6.08033 -4.22799 2.18021 2.21945 3.22026 3.29685 3.32978 4.31817 4.56378 4.93865 4.98694 5.06416 5.15198 5.47260 5.54896 5.64921 5.68338 5.76605 5.77526 5.87445 5.95435 6.01268 6.04474 6.16025 6.24986 6.37824 6.39072 6.47081 6.52189 6.61031 6.82953 6.88328 6.90463 7.18747 7.30655 7.32883 7.46291 7.64905 7.73891 7.87351 8.13499 8.62847 8.84621 9.05280 9.47340 10.89921 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.005377 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.681936 B = 5206.439830 C = 5665.463768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.691 5.691 3 C 0.234 3.766 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C -0.041 4.041 14 C -0.108 4.108 15 C -0.132 4.132 16 C -0.108 4.108 17 C -0.068 4.068 18 C -0.091 4.091 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.111 4.111 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.355 0.645 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 5.377 13.009 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.323 5.323 3 C 0.126 3.874 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.042 4.042 14 C -0.126 4.126 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.110 4.110 19 C -0.207 4.207 20 C -0.204 4.204 21 C -0.146 4.146 22 C -0.129 4.129 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.175 0.825 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.635 5.174 13.545 14.591 hybrid contribution -0.629 0.782 -1.902 2.151 sum -2.264 5.957 11.643 13.273 Atomic orbital electron populations 1.21817 0.91062 0.97715 0.99861 1.60952 1.06038 1.15748 1.49556 1.18098 0.95826 0.85919 0.87538 0.93035 1.21848 1.33146 1.11561 0.91175 0.92116 1.24998 0.94642 0.95064 0.98890 1.69736 1.39383 1.23047 1.21228 0.86580 0.79611 0.79821 0.81988 1.20541 1.21204 1.19890 1.20487 0.94380 0.93227 0.96106 1.21146 0.99267 1.00469 0.91692 1.20893 1.02589 0.93853 0.97669 1.19579 1.02912 0.93802 0.94524 1.20561 0.96654 0.99536 0.93825 1.21078 0.96857 0.98621 0.94398 1.21901 0.99526 0.98371 1.00861 1.21858 1.01094 1.00729 0.96696 1.20895 1.02340 0.98612 0.92723 1.21238 0.99153 0.95275 0.97260 0.95082 0.93845 0.95600 0.82478 0.92541 0.85659 0.87627 0.91831 0.91811 0.91227 0.93093 0.93339 0.91602 0.92912 0.92954 0.92895 0.87536 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.88 60.06 0.59 1.62 16 2 N -0.69 -16.32 5.71 -116.49 -0.67 -16.99 16 3 C 0.23 5.76 2.87 -70.01 -0.20 5.56 16 4 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 5 C -0.54 -14.06 6.47 -34.44 -0.22 -14.29 16 6 H 0.06 1.59 6.04 -52.49 -0.32 1.28 16 7 C 0.07 1.76 5.23 -17.82 -0.09 1.66 16 8 N -0.89 -24.34 11.63 55.43 0.64 -23.70 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C -0.04 -0.90 4.65 -104.62 -0.49 -1.38 16 14 C -0.11 -2.11 8.27 -39.59 -0.33 -2.44 16 15 C -0.13 -2.24 9.70 -39.58 -0.38 -2.63 16 16 C -0.11 -1.73 4.71 -104.62 -0.49 -2.22 16 17 C -0.07 -0.86 4.84 -27.88 -0.13 -1.00 16 18 C -0.09 -1.04 2.91 -90.62 -0.26 -1.30 16 19 C -0.15 -1.74 8.78 37.15 0.33 -1.41 16 20 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 21 C -0.13 -2.20 7.98 -39.58 -0.32 -2.52 16 22 C -0.11 -2.25 8.89 -39.58 -0.35 -2.60 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.95 6.45 -51.93 -0.34 0.61 16 25 H 0.03 0.63 7.02 -51.93 -0.36 0.26 16 26 H 0.35 8.98 7.08 -39.29 -0.28 8.70 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.13 2.48 7.40 -52.48 -0.39 2.09 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.89 6.28 -51.93 -0.33 0.56 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.11 1.61 8.05 -52.49 -0.42 1.19 16 40 H 0.13 2.62 6.43 -52.48 -0.34 2.28 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -26.31 314.98 -8.86 -35.17 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.55 Total: 8.96 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.01 Total: -23.97 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.02 Total: -40.68 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.31 -8.86 -35.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.414 kcal (2) G-P(sol) polarization free energy of solvation -26.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds