Wall clock time and date at job start Mon Mar 30 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99672 * 2 1 4 4 H 1.09000 * 109.47064 * 185.65158 * 3 2 1 5 5 C 1.50703 * 109.47053 * 305.64774 * 3 2 1 6 6 H 1.07994 * 120.00334 * 120.00112 * 5 3 2 7 7 C 1.37880 * 119.99707 * 300.00192 * 5 3 2 8 8 N 1.31513 * 120.00629 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99587 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47475 * 90.00136 * 9 7 5 11 11 H 1.48508 * 109.47209 * 209.99689 * 9 7 5 12 12 H 1.48496 * 109.47366 * 329.99768 * 9 7 5 13 13 C 1.50701 * 109.47384 * 65.64674 * 3 2 1 14 14 C 1.38235 * 119.99737 * 29.97650 * 13 3 2 15 15 C 1.38230 * 120.00126 * 179.97438 * 14 13 3 16 16 C 1.38237 * 119.99659 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00096 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47039 * 89.99961 * 17 16 15 19 19 C 1.52992 * 109.47359 * 65.00224 * 18 17 16 20 20 C 1.53002 * 109.46961 * 185.00519 * 18 17 16 21 21 C 1.38232 * 120.00372 * 0.27612 * 16 15 14 22 22 C 1.38232 * 120.00273 * 209.95351 * 13 3 2 23 23 H 1.09007 * 109.46616 * 185.11347 * 1 2 3 24 24 H 1.08996 * 109.47524 * 305.11367 * 1 2 3 25 25 H 1.08997 * 109.47156 * 65.11494 * 1 2 3 26 26 H 1.00900 * 111.00009 * 236.04578 * 2 1 3 27 27 H 0.96996 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08008 * 120.00043 * 359.97438 * 14 13 3 29 29 H 1.08000 * 120.00501 * 179.97438 * 15 14 13 30 30 H 1.09005 * 109.46665 * 330.00414 * 17 16 15 31 31 H 1.08993 * 109.47321 * 209.99877 * 17 16 15 32 32 H 1.09008 * 109.47035 * 304.99762 * 18 17 16 33 33 H 1.08995 * 109.47062 * 59.99823 * 19 18 17 34 34 H 1.09000 * 109.47514 * 180.02562 * 19 18 17 35 35 H 1.08996 * 109.47280 * 300.00065 * 19 18 17 36 36 H 1.08997 * 109.47326 * 60.00171 * 20 18 17 37 37 H 1.09008 * 109.47007 * 180.02562 * 20 18 17 38 38 H 1.08996 * 109.47297 * 299.99514 * 20 18 17 39 39 H 1.07999 * 120.00555 * 179.72482 * 21 16 15 40 40 H 1.08004 * 119.99790 * 359.97438 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 1 3.0803 1.3442 -0.1012 5 6 1.4023 2.1372 -1.1546 6 1 0.8181 3.0264 -0.9697 7 6 1.6055 1.7023 -2.4471 8 7 2.3173 0.6197 -2.6725 9 14 0.8709 2.6518 -3.8783 10 1 1.8372 3.6819 -4.3370 11 1 0.5775 1.7168 -4.9941 12 1 -0.3858 3.3114 -3.4418 13 6 1.6284 2.0505 1.2944 14 6 1.4854 1.3049 2.4496 15 6 1.1494 1.9276 3.6370 16 6 0.9568 3.2962 3.6693 17 6 0.5909 3.9753 4.9639 18 6 1.8662 4.3950 5.6977 19 6 2.6007 5.4570 4.8772 20 6 1.5004 4.9713 7.0671 21 6 1.0946 4.0411 2.5130 22 6 1.4352 3.4188 1.3266 23 1 -0.3633 -1.0237 0.0916 24 1 -0.3634 0.5911 0.8406 25 1 -0.3633 0.4324 -0.9322 26 1 1.8306 -0.5261 -0.7814 27 1 2.4606 0.3140 -3.5819 28 1 1.6363 0.2357 2.4244 29 1 1.0372 1.3451 4.5395 30 1 0.0229 3.2855 5.5881 31 1 -0.0140 4.8571 4.7533 32 1 2.5119 3.5268 5.8297 33 1 1.9550 6.3251 4.7452 34 1 3.5095 5.7557 5.3997 35 1 2.8613 5.0464 3.9017 36 1 0.9771 4.2147 7.6517 37 1 2.4089 5.2708 7.5897 38 1 0.8547 5.8395 6.9352 39 1 0.9398 5.1096 2.5373 40 1 1.5477 4.0014 0.4241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259096528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:53 Heat of formation + Delta-G solvation = -12.894826 kcal Electronic energy + Delta-G solvation = -18048.487779 eV Core-core repulsion = 15440.363182 eV Total energy + Delta-G solvation = -2608.124598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49244 -37.96502 -36.33948 -33.83633 -32.28142 -31.51879 -29.18049 -27.91770 -26.88869 -26.03245 -23.29015 -23.25376 -21.17687 -20.68197 -18.34364 -17.44155 -16.50322 -16.39961 -16.01673 -15.60893 -15.25661 -15.06235 -14.70792 -14.46883 -14.10394 -13.95952 -13.66926 -13.23304 -12.98692 -12.92617 -12.84245 -12.69359 -12.51828 -12.34361 -12.16405 -11.84150 -11.70734 -11.65710 -11.42790 -11.32139 -11.16982 -10.65529 -9.55513 -9.08993 -8.99877 -8.09497 -6.32142 0.71610 0.74466 1.35107 1.37462 1.46167 2.36480 3.04216 3.14521 3.96166 4.01964 4.08407 4.18349 4.31331 4.36933 4.48072 4.55656 4.72821 4.79183 4.84164 4.87531 4.94608 5.01097 5.03994 5.04432 5.14102 5.18110 5.27601 5.30026 5.38180 5.40574 5.51584 5.55165 5.56662 5.66016 5.80473 5.91392 6.01658 6.14178 6.40916 6.70216 6.83512 7.03616 7.40895 8.85384 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.005377 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.681936 B = 5206.439830 C = 5665.463768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.685 5.685 3 C 0.237 3.763 4 H 0.012 0.988 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.022 3.978 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.273 1.273 13 C -0.071 4.071 14 C -0.115 4.115 15 C -0.128 4.128 16 C -0.094 4.094 17 C -0.066 4.066 18 C -0.089 4.089 19 C -0.150 4.150 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.128 4.128 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.001 0.999 26 H 0.343 0.657 27 H 0.265 0.735 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.130 0.870 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 6.508 15.161 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.315 5.315 3 C 0.129 3.871 4 H 0.030 0.970 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.072 4.072 14 C -0.133 4.133 15 C -0.146 4.146 16 C -0.094 4.094 17 C -0.103 4.103 18 C -0.107 4.107 19 C -0.208 4.208 20 C -0.199 4.199 21 C -0.141 4.141 22 C -0.146 4.146 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.019 0.981 26 H 0.161 0.839 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.854 6.313 15.711 17.171 hybrid contribution -0.232 0.461 -2.473 2.526 sum -3.086 6.773 13.238 15.187 Atomic orbital electron populations 1.21759 0.89994 0.99049 0.98625 1.60969 1.06847 1.15130 1.48571 1.17912 0.93524 0.86487 0.89191 0.96995 1.22039 1.32909 1.11455 0.92068 0.92695 1.25675 0.95084 0.95899 1.01077 1.69839 1.40272 1.24080 1.21593 0.85668 0.78840 0.78645 0.79194 1.20142 1.20886 1.19749 1.20273 0.97381 0.93992 0.95521 1.21116 0.99946 1.00125 0.92117 1.21190 1.01210 0.94622 0.97558 1.19992 1.00318 0.93496 0.95635 1.20640 0.97580 1.00056 0.92051 1.21052 0.95943 0.98315 0.95429 1.21907 1.00324 0.98754 0.99778 1.21811 1.01708 1.01129 0.95270 1.21103 1.01188 0.99817 0.91944 1.21183 1.00596 0.94735 0.98094 0.92622 0.93486 0.98073 0.83869 0.92545 0.86333 0.84692 0.90227 0.90623 0.92073 0.92125 0.92442 0.93935 0.92074 0.92272 0.92173 0.85259 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.52 9.88 127.69 1.26 3.79 16 2 N -0.68 -33.34 5.71 -522.47 -2.98 -36.33 16 3 C 0.24 12.19 2.87 43.42 0.12 12.32 16 4 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.55 -29.51 6.47 25.60 0.17 -29.34 16 6 H 0.05 2.98 6.04 -2.91 -0.02 2.96 16 7 C 0.02 1.22 5.23 84.66 0.44 1.66 16 8 N -0.92 -51.34 11.63 21.45 0.25 -51.09 16 9 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C -0.07 -3.17 4.65 -19.87 -0.09 -3.26 16 14 C -0.11 -4.48 8.27 22.27 0.18 -4.29 16 15 C -0.13 -4.07 9.70 22.27 0.22 -3.86 16 16 C -0.09 -2.78 4.71 -19.87 -0.09 -2.87 16 17 C -0.07 -1.41 4.84 29.85 0.14 -1.27 16 18 C -0.09 -1.73 2.91 -10.80 -0.03 -1.76 16 19 C -0.15 -3.11 8.78 71.98 0.63 -2.48 16 20 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 21 C -0.12 -4.06 7.98 22.27 0.18 -3.88 16 22 C -0.13 -5.26 8.89 22.27 0.20 -5.06 16 23 H 0.06 2.18 8.14 -2.38 -0.02 2.17 16 24 H 0.05 2.05 6.45 -2.39 -0.02 2.04 16 25 H 0.00 0.03 7.02 -2.39 -0.02 0.02 16 26 H 0.34 17.97 7.08 -89.69 -0.63 17.33 16 27 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.12 4.71 7.40 -2.91 -0.02 4.69 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.08 1.51 8.09 -2.38 -0.02 1.49 16 31 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 32 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.07 6.28 -2.39 -0.01 1.06 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.13 3.64 8.05 -2.91 -0.02 3.61 16 40 H 0.11 4.71 6.43 -2.91 -0.02 4.69 16 Total: -1.00 -57.70 314.98 3.65 -54.05 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.37 Total: 29.71 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 3.99 Total: -41.75 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.74 Total: -87.42 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -57.70 3.65 -54.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.152 kcal (2) G-P(sol) polarization free energy of solvation -57.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds