Wall clock time and date at job start Mon Mar 30 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46897 * 111.00183 * 2 1 4 4 H 1.09006 * 109.46928 * 323.57131 * 3 2 1 5 5 C 1.50707 * 109.47109 * 203.57880 * 3 2 1 6 6 H 1.08005 * 119.99400 * 239.72084 * 5 3 2 7 7 C 1.37870 * 120.00181 * 59.99620 * 5 3 2 8 8 N 1.31516 * 120.00168 * 359.72433 * 7 5 3 9 9 Si 1.86802 * 120.00128 * 179.72577 * 7 5 3 10 10 H 1.48496 * 109.47176 * 89.99705 * 9 7 5 11 11 H 1.48504 * 109.46981 * 210.00070 * 9 7 5 12 12 H 1.48500 * 109.46800 * 329.99972 * 9 7 5 13 13 C 1.50695 * 109.47673 * 83.57529 * 3 2 1 14 14 C 1.38240 * 119.99904 * 46.13307 * 13 3 2 15 15 C 1.38231 * 120.00007 * 179.79150 * 14 13 3 16 16 C 1.38232 * 120.00125 * 0.46347 * 15 14 13 17 17 C 1.50695 * 120.00342 * 179.79151 * 16 15 14 18 18 C 1.53010 * 109.47059 * 269.98171 * 17 16 15 19 19 C 1.52998 * 109.47115 * 174.99928 * 18 17 16 20 20 C 1.52999 * 109.46694 * 294.99821 * 18 17 16 21 21 C 1.38245 * 119.99735 * 359.77359 * 16 15 14 22 22 C 1.38231 * 120.00066 * 0.02562 * 21 16 15 23 23 H 1.09007 * 109.47433 * 184.63298 * 1 2 3 24 24 H 1.08999 * 109.47108 * 304.62609 * 1 2 3 25 25 H 1.08995 * 109.47306 * 64.63259 * 1 2 3 26 26 H 1.00899 * 111.00167 * 123.95519 * 2 1 3 27 27 H 0.97001 * 120.00017 * 179.97438 * 8 7 5 28 28 H 1.08006 * 119.99691 * 0.02562 * 14 13 3 29 29 H 1.08002 * 119.99829 * 180.25805 * 15 14 13 30 30 H 1.08999 * 109.47249 * 29.97755 * 17 16 15 31 31 H 1.08997 * 109.47767 * 149.98352 * 17 16 15 32 32 H 1.08999 * 109.46754 * 54.99622 * 18 17 16 33 33 H 1.09000 * 109.47170 * 59.99516 * 19 18 17 34 34 H 1.08998 * 109.46888 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47053 * 299.99575 * 19 18 17 36 36 H 1.09004 * 109.46536 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.47358 * 299.99432 * 20 18 17 38 38 H 1.08995 * 109.47462 * 60.00312 * 20 18 17 39 39 H 1.07998 * 119.99494 * 179.97438 * 21 16 15 40 40 H 1.07994 * 120.00065 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3536 2.0069 -0.6103 5 6 3.3912 1.3736 -0.5684 6 1 4.2177 1.7254 0.0313 7 6 3.6121 0.9320 -1.8556 8 7 2.6055 0.5037 -2.5857 9 14 5.3411 0.9420 -2.5627 10 1 6.0033 -0.3543 -2.2694 11 1 5.2735 1.1420 -4.0327 12 1 6.1207 2.0464 -1.9482 13 6 2.0271 1.8974 1.4118 14 6 2.5331 1.1122 2.4308 15 6 2.5661 1.5964 3.7251 16 6 2.0843 2.8620 4.0021 17 6 2.1160 3.3881 5.4139 18 6 0.8141 3.0156 6.1263 19 6 0.8965 3.4396 7.5941 20 6 -0.3584 3.7322 5.4536 21 6 1.5738 3.6454 2.9839 22 6 1.5446 3.1629 1.6889 23 1 -0.3634 -1.0244 0.0830 24 1 -0.3633 0.5839 0.8456 25 1 -0.3633 0.4402 -0.9285 26 1 1.8305 -0.5261 0.7813 27 1 2.7609 0.1933 -3.4915 28 1 2.9061 0.1218 2.2150 29 1 2.9653 0.9844 4.5205 30 1 2.9598 2.9493 5.9464 31 1 2.2224 4.4727 5.3954 32 1 0.6633 1.9377 6.0674 33 1 1.0475 4.5174 7.6530 34 1 -0.0307 3.1738 8.1017 35 1 1.7319 2.9290 8.0734 36 1 -1.2858 3.4672 5.9614 37 1 -0.2076 4.8101 5.5125 38 1 -0.4172 3.4302 4.4079 39 1 1.1970 4.6341 3.2004 40 1 1.1453 3.7747 0.8935 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259096530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:56 Heat of formation + Delta-G solvation = -10.773641 kcal Electronic energy + Delta-G solvation = -17926.612145 eV Core-core repulsion = 15318.579528 eV Total energy + Delta-G solvation = -2608.032616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56434 -37.89530 -36.21655 -34.06644 -32.28311 -31.68407 -29.37758 -27.95996 -26.86696 -25.51827 -23.87233 -23.12274 -21.38224 -20.73770 -18.54465 -17.48574 -16.53358 -16.28213 -16.08136 -15.57646 -15.23252 -15.09470 -14.72410 -14.54004 -14.12816 -13.87190 -13.63458 -13.46878 -13.04823 -12.97465 -12.83011 -12.80666 -12.62937 -12.38507 -12.31279 -11.80681 -11.75184 -11.62656 -11.45510 -11.32841 -11.14870 -10.51327 -9.68842 -9.21717 -8.68556 -7.95310 -6.16144 0.61959 0.62722 1.43564 1.44536 1.53998 2.47952 2.99854 3.25438 3.90153 3.96600 4.09517 4.13822 4.18029 4.26315 4.33744 4.44153 4.61384 4.65214 4.72584 4.78992 4.82980 4.87639 4.91608 5.00859 5.05717 5.11069 5.11588 5.14832 5.25075 5.35035 5.41149 5.48369 5.52944 5.67604 5.78756 5.82457 5.96679 6.20153 6.31486 6.64126 6.98304 7.16290 7.55315 9.07627 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.005227 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.101804 B = 5355.895524 C = 5741.229814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.670 5.670 3 C 0.258 3.742 4 H 0.004 0.996 5 C -0.535 4.535 6 H 0.044 0.956 7 C 0.037 3.963 8 N -0.883 5.883 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.273 1.273 13 C -0.098 4.098 14 C -0.127 4.127 15 C -0.119 4.119 16 C -0.096 4.096 17 C -0.067 4.067 18 C -0.089 4.089 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.112 4.112 22 C -0.140 4.140 23 H 0.065 0.935 24 H 0.004 0.996 25 H 0.037 0.963 26 H 0.320 0.680 27 H 0.255 0.745 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.135 0.865 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 5.000 17.521 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.299 5.299 3 C 0.150 3.850 4 H 0.022 0.978 5 C -0.574 4.574 6 H 0.062 0.938 7 C -0.166 4.166 8 N -0.519 5.519 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.100 4.100 14 C -0.146 4.146 15 C -0.137 4.137 16 C -0.096 4.096 17 C -0.104 4.104 18 C -0.107 4.107 19 C -0.200 4.200 20 C -0.207 4.207 21 C -0.130 4.130 22 C -0.159 4.159 23 H 0.084 0.916 24 H 0.023 0.977 25 H 0.056 0.944 26 H 0.138 0.862 27 H 0.064 0.936 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.153 0.847 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.639 4.845 16.641 17.710 hybrid contribution 0.557 0.079 -0.280 0.629 sum -3.082 4.924 16.361 17.361 Atomic orbital electron populations 1.21984 0.90116 1.00195 0.98193 1.60800 1.05381 1.15833 1.47896 1.17996 0.94484 0.85760 0.86746 0.97815 1.21145 0.93014 1.44619 0.98622 0.93821 1.25632 0.99678 0.94098 0.97195 1.70197 1.31798 1.41172 1.08712 0.85757 0.81167 0.78351 0.77389 1.20223 1.20925 1.19745 1.21186 0.95987 0.95131 0.97689 1.20967 1.00466 1.00039 0.93113 1.21184 1.00401 0.96206 0.95882 1.20012 0.99056 0.94196 0.96365 1.20651 0.98397 1.01257 0.90081 1.21054 0.94176 0.99969 0.95530 1.21812 1.02102 1.01772 0.94279 1.21910 0.97905 1.00714 1.00207 1.21129 0.99993 1.00152 0.91713 1.21151 1.01665 0.95748 0.97315 0.91604 0.97718 0.94447 0.86182 0.93611 0.87030 0.84520 0.90284 0.90382 0.92146 0.92083 0.92244 0.92161 0.92427 0.91988 0.93908 0.84714 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.93 10.49 127.69 1.34 3.26 16 2 N -0.67 -32.77 5.89 -522.49 -3.08 -35.85 16 3 C 0.26 13.34 2.09 43.42 0.09 13.43 16 4 H 0.00 0.23 7.67 -2.38 -0.02 0.21 16 5 C -0.54 -30.36 8.67 25.60 0.22 -30.13 16 6 H 0.04 2.50 7.74 -2.91 -0.02 2.47 16 7 C 0.04 2.12 5.39 84.65 0.46 2.57 16 8 N -0.88 -52.51 12.76 21.44 0.27 -52.23 16 9 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C -0.10 -4.27 4.52 -19.87 -0.09 -4.36 16 14 C -0.13 -4.92 8.98 22.27 0.20 -4.72 16 15 C -0.12 -3.72 9.70 22.27 0.22 -3.50 16 16 C -0.10 -2.73 4.71 -19.87 -0.09 -2.82 16 17 C -0.07 -1.36 4.84 29.85 0.14 -1.22 16 18 C -0.09 -1.64 2.91 -10.79 -0.03 -1.67 16 19 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 20 C -0.15 -2.88 8.76 71.98 0.63 -2.25 16 21 C -0.11 -3.49 7.96 22.27 0.18 -3.32 16 22 C -0.14 -5.47 9.67 22.27 0.22 -5.25 16 23 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.00 0.18 7.87 -2.39 -0.02 0.16 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.32 14.56 6.76 -89.70 -0.61 13.95 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.11 4.35 6.86 -2.91 -0.02 4.33 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.08 1.45 8.09 -2.39 -0.02 1.44 16 31 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.04 1.00 6.27 -2.39 -0.01 0.98 16 39 H 0.14 3.46 8.04 -2.91 -0.02 3.43 16 40 H 0.11 4.17 7.99 -2.91 -0.02 4.15 16 Total: -1.00 -63.44 324.26 3.75 -59.69 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.38 Total: 22.96 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.14 Total: -41.32 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.80 Total: -88.08 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -63.44 3.75 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259096530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.921 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds