Wall clock time and date at job start Mon Mar 30 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46894 * 2 1 4 4 C 1.38101 * 120.03708 * 288.24763 * 3 2 1 5 5 C 1.38288 * 120.07508 * 179.72858 * 4 3 2 6 6 C 1.38287 * 120.14687 * 0.30286 * 5 4 3 7 7 C 1.38096 * 120.07838 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.04167 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47450 * 265.00032 * 8 7 6 10 10 C 1.38911 * 120.03612 * 108.53485 * 3 2 1 11 11 N 1.39670 * 120.07627 * 359.97438 * 10 3 2 12 12 C 1.46897 * 111.00140 * 302.87508 * 11 10 3 13 13 C 1.46901 * 111.00165 * 66.83403 * 11 10 3 14 14 C 1.50701 * 109.47103 * 174.99011 * 13 11 10 15 15 H 1.07996 * 120.00195 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99640 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47384 * 59.99300 * 18 16 14 20 20 H 1.48498 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47209 * 299.99699 * 18 16 14 22 22 H 1.08997 * 109.47526 * 192.83691 * 1 2 3 23 23 H 1.09002 * 109.47108 * 312.84137 * 1 2 3 24 24 H 1.09007 * 109.46791 * 72.83975 * 1 2 3 25 25 H 1.08999 * 109.47199 * 239.99807 * 2 1 3 26 26 H 1.09000 * 109.46483 * 119.99610 * 2 1 3 27 27 H 1.08003 * 119.96117 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.92761 * 180.27617 * 5 4 3 29 29 H 1.08007 * 119.96010 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.47005 * 25.00073 * 8 7 6 31 31 H 1.09005 * 109.47144 * 144.99599 * 8 7 6 32 32 H 1.09005 * 109.46789 * 59.99541 * 9 8 7 33 33 H 1.08994 * 109.47104 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47063 * 299.99698 * 9 8 7 35 35 H 1.09002 * 109.46944 * 75.04752 * 12 11 10 36 36 H 1.08996 * 109.47290 * 195.04471 * 12 11 10 37 37 H 1.08997 * 109.47282 * 315.05173 * 12 11 10 38 38 H 1.09002 * 109.46827 * 294.98976 * 13 11 10 39 39 H 1.09001 * 109.47133 * 54.99000 * 13 11 10 40 40 H 0.97000 * 120.00101 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.9097 2.1974 -1.1354 5 6 2.3653 3.5031 -1.1345 6 6 2.9505 4.0337 0.0005 7 6 3.0814 3.2609 1.1375 8 6 3.7187 3.8402 2.3742 9 6 5.2050 3.4781 2.3993 10 6 2.6245 1.9490 1.1402 11 7 2.7549 1.1647 2.2885 12 6 1.4482 0.6643 2.7356 13 6 3.6946 0.0576 2.0660 14 6 3.9036 -0.6910 3.3570 15 1 3.3902 -0.3757 4.2533 16 6 4.7512 -1.7779 3.3942 17 7 5.3767 -2.1615 2.3029 18 14 5.0098 -2.7064 4.9943 19 1 3.7106 -3.2480 5.4679 20 1 5.9597 -3.8254 4.7694 21 1 5.5641 -1.7841 6.0177 22 1 -0.3634 -1.0019 0.2283 23 1 -0.3633 0.6988 0.7535 24 1 -0.3633 0.3032 -0.9820 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 1.4533 1.7860 -2.0236 28 1 2.2642 4.1096 -2.0224 29 1 3.3056 5.0537 -0.0023 30 1 3.6090 4.9246 2.3655 31 1 3.2304 3.4327 3.2595 32 1 5.6932 3.8856 1.5140 33 1 5.6660 3.8975 3.2935 34 1 5.3147 2.3937 2.4081 35 1 1.1240 -0.1427 2.0785 36 1 1.5320 0.2905 3.7560 37 1 0.7189 1.4738 2.7038 38 1 3.2870 -0.6194 1.3152 39 1 4.6480 0.4548 1.7178 40 1 5.9733 -2.9259 2.3291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259245540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:29 Heat of formation + Delta-G solvation = 31.644530 kcal Electronic energy + Delta-G solvation = -18819.626537 eV Core-core repulsion = 16213.433311 eV Total energy + Delta-G solvation = -2606.193226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95844 -36.15658 -34.46127 -32.67484 -31.93109 -29.01235 -28.51013 -27.10337 -24.84622 -23.88344 -23.02196 -21.51612 -20.16076 -19.53232 -16.61588 -15.98117 -15.54731 -14.90353 -14.60917 -14.00002 -13.80204 -13.65212 -13.33198 -12.92123 -12.80057 -12.34566 -12.26626 -11.89279 -11.71134 -11.62551 -11.23232 -11.01713 -10.96670 -10.88355 -10.60400 -10.51283 -10.33558 -10.27931 -10.05323 -9.94798 -9.23690 -8.46073 -8.12658 -7.94494 -7.21365 -6.04589 -4.06146 1.82364 1.86435 3.31921 3.36481 3.39103 4.17642 4.41177 4.95454 5.17960 5.22984 5.30824 5.31116 5.52215 5.65414 5.71998 5.74655 5.83385 5.99560 6.01799 6.06635 6.10716 6.22248 6.24582 6.32934 6.38283 6.46112 6.50604 6.57570 6.75350 6.80179 6.90864 6.93397 7.03502 7.19270 7.27371 7.37565 7.52358 7.83445 8.08891 8.16428 8.64671 9.00452 9.57689 11.05810 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.007966 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.527606 B = 3514.296008 C = 4219.878333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.121 4.121 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.065 4.065 8 C -0.069 4.069 9 C -0.143 4.143 10 C 0.115 3.885 11 N -0.506 5.506 12 C 0.027 3.973 13 C 0.191 3.809 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.011 0.989 39 H 0.031 0.969 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 8.780 -4.393 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.108 4.108 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.066 4.066 8 C -0.106 4.106 9 C -0.200 4.200 10 C 0.020 3.980 11 N -0.228 5.228 12 C -0.120 4.120 13 C 0.068 3.932 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.049 0.951 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.444 8.905 -4.055 11.716 hybrid contribution -0.032 -1.038 -0.014 1.038 sum -6.476 7.868 -4.069 10.972 Atomic orbital electron populations 1.21767 0.95389 1.01443 1.01229 1.21272 0.95648 0.93476 1.05047 1.20615 0.99734 0.96259 0.94159 1.20799 1.01383 0.94261 0.97537 1.20921 1.00797 0.95576 0.97946 1.20855 1.01129 0.99414 0.93003 1.19838 0.98364 0.92783 0.95653 1.20303 0.96116 0.98042 0.96144 1.21695 0.94654 1.03613 1.00042 1.18871 0.96083 0.93046 0.89964 1.59828 1.10573 1.24457 1.27934 1.22599 0.89520 0.98183 1.01657 1.19994 0.90240 0.85878 0.97041 1.21118 1.26498 1.11789 0.95510 0.91846 1.24961 0.95745 0.97265 0.96436 1.69945 1.29377 1.26861 1.27346 0.86583 0.77958 0.79276 0.83724 1.20298 1.21386 1.20179 0.92656 0.92643 0.93371 0.91593 0.87016 0.87118 0.86967 0.86730 0.92923 0.89904 0.93970 0.93262 0.90822 0.93868 0.91114 0.94009 0.97192 0.95127 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.86 37.16 0.33 -1.71 16 2 C -0.12 -2.08 4.58 -27.88 -0.13 -2.21 16 3 C -0.11 -1.92 4.90 -104.42 -0.51 -2.43 16 4 C -0.12 -1.94 9.61 -39.61 -0.38 -2.32 16 5 C -0.13 -1.99 10.04 -39.55 -0.40 -2.39 16 6 C -0.13 -1.94 9.67 -39.62 -0.38 -2.33 16 7 C -0.07 -1.16 5.15 -104.42 -0.54 -1.70 16 8 C -0.07 -1.13 5.76 -27.88 -0.16 -1.29 16 9 C -0.14 -2.43 9.89 37.16 0.37 -2.06 16 10 C 0.12 2.26 4.60 -83.79 -0.39 1.87 16 11 N -0.51 -10.82 3.79 -180.33 -0.68 -11.50 16 12 C 0.03 0.53 7.87 60.06 0.47 1.00 16 13 C 0.19 4.84 4.31 -4.97 -0.02 4.82 16 14 C -0.51 -13.88 8.60 -34.44 -0.30 -14.18 16 15 H 0.06 1.70 6.79 -52.49 -0.36 1.35 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.80 7.28 -51.93 -0.38 0.43 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.11 2.29 2.57 -51.93 -0.13 2.16 16 27 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 31 H 0.08 1.47 7.63 -51.93 -0.40 1.07 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.52 7.22 -51.93 -0.37 1.14 16 35 H 0.04 0.82 3.83 -51.93 -0.20 0.63 16 36 H 0.07 1.41 6.93 -51.93 -0.36 1.05 16 37 H 0.04 0.73 7.92 -51.93 -0.41 0.31 16 38 H 0.01 0.28 5.03 -51.93 -0.26 0.02 16 39 H 0.03 0.86 7.23 -51.93 -0.38 0.49 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -28.53 310.93 -8.59 -37.12 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.18 Total: 2.19 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.13 Total: -23.41 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.05 Total: -36.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.53 -8.59 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259245540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.769 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds