Wall clock time and date at job start Mon Mar 30 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46894 * 2 1 4 4 C 1.38101 * 120.03708 * 288.24763 * 3 2 1 5 5 C 1.38288 * 120.07508 * 179.72858 * 4 3 2 6 6 C 1.38287 * 120.14687 * 0.30286 * 5 4 3 7 7 C 1.38096 * 120.07838 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.04167 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47450 * 265.00032 * 8 7 6 10 10 C 1.38911 * 120.03612 * 108.53485 * 3 2 1 11 11 N 1.39670 * 120.07627 * 359.97438 * 10 3 2 12 12 C 1.46897 * 111.00140 * 302.87508 * 11 10 3 13 13 C 1.46901 * 111.00165 * 66.83403 * 11 10 3 14 14 C 1.50701 * 109.47103 * 174.99011 * 13 11 10 15 15 H 1.07996 * 120.00195 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99640 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47384 * 59.99300 * 18 16 14 20 20 H 1.48498 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47209 * 299.99699 * 18 16 14 22 22 H 1.08997 * 109.47526 * 192.83691 * 1 2 3 23 23 H 1.09002 * 109.47108 * 312.84137 * 1 2 3 24 24 H 1.09007 * 109.46791 * 72.83975 * 1 2 3 25 25 H 1.08999 * 109.47199 * 239.99807 * 2 1 3 26 26 H 1.09000 * 109.46483 * 119.99610 * 2 1 3 27 27 H 1.08003 * 119.96117 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.92761 * 180.27617 * 5 4 3 29 29 H 1.08007 * 119.96010 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.47005 * 25.00073 * 8 7 6 31 31 H 1.09005 * 109.47144 * 144.99599 * 8 7 6 32 32 H 1.09005 * 109.46789 * 59.99541 * 9 8 7 33 33 H 1.08994 * 109.47104 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47063 * 299.99698 * 9 8 7 35 35 H 1.09002 * 109.46944 * 75.04752 * 12 11 10 36 36 H 1.08996 * 109.47290 * 195.04471 * 12 11 10 37 37 H 1.08997 * 109.47282 * 315.05173 * 12 11 10 38 38 H 1.09002 * 109.46827 * 294.98976 * 13 11 10 39 39 H 1.09001 * 109.47133 * 54.99000 * 13 11 10 40 40 H 0.97000 * 120.00101 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 1.9097 2.1974 -1.1354 5 6 2.3653 3.5031 -1.1345 6 6 2.9505 4.0337 0.0005 7 6 3.0814 3.2609 1.1375 8 6 3.7187 3.8402 2.3742 9 6 5.2050 3.4781 2.3993 10 6 2.6245 1.9490 1.1402 11 7 2.7549 1.1647 2.2885 12 6 1.4482 0.6643 2.7356 13 6 3.6946 0.0576 2.0660 14 6 3.9036 -0.6910 3.3570 15 1 3.3902 -0.3757 4.2533 16 6 4.7512 -1.7779 3.3942 17 7 5.3767 -2.1615 2.3029 18 14 5.0098 -2.7064 4.9943 19 1 3.7106 -3.2480 5.4679 20 1 5.9597 -3.8254 4.7694 21 1 5.5641 -1.7841 6.0177 22 1 -0.3634 -1.0019 0.2283 23 1 -0.3633 0.6988 0.7535 24 1 -0.3633 0.3032 -0.9820 25 1 1.8934 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 1.4533 1.7860 -2.0236 28 1 2.2642 4.1096 -2.0224 29 1 3.3056 5.0537 -0.0023 30 1 3.6090 4.9246 2.3655 31 1 3.2304 3.4327 3.2595 32 1 5.6932 3.8856 1.5140 33 1 5.6660 3.8975 3.2935 34 1 5.3147 2.3937 2.4081 35 1 1.1240 -0.1427 2.0785 36 1 1.5320 0.2905 3.7560 37 1 0.7189 1.4738 2.7038 38 1 3.2870 -0.6194 1.3152 39 1 4.6480 0.4548 1.7178 40 1 5.9733 -2.9259 2.3291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259245540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:28 Heat of formation + Delta-G solvation = 17.021712 kcal Electronic energy + Delta-G solvation = -18820.260630 eV Core-core repulsion = 16213.433311 eV Total energy + Delta-G solvation = -2606.827319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36361 -37.65989 -35.81453 -34.68043 -33.33662 -30.49060 -29.84567 -28.94878 -26.53421 -25.24398 -24.50555 -23.13860 -21.59705 -20.86334 -18.59307 -17.44898 -17.09090 -16.67072 -16.10187 -15.45469 -15.29938 -15.09209 -14.78421 -14.31491 -14.29323 -13.99186 -13.54308 -13.47685 -13.16576 -12.94474 -12.82645 -12.81475 -12.58286 -12.39750 -12.22033 -12.04580 -11.96268 -11.68374 -11.60580 -11.48306 -11.18138 -10.59340 -9.40465 -9.32019 -8.89771 -8.18696 -6.28066 0.52459 0.56446 1.40494 1.43101 1.50877 2.40363 2.88849 3.13831 3.37714 3.87988 3.93961 4.11339 4.28599 4.42139 4.42651 4.44103 4.56264 4.62269 4.68505 4.74237 4.75159 4.79168 4.97472 5.00462 5.02095 5.09829 5.13550 5.20602 5.26417 5.31388 5.38119 5.53893 5.55562 5.65612 5.68827 5.73131 5.88128 6.10658 6.18743 6.29220 6.86792 6.94478 7.40706 8.91679 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.007966 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.527606 B = 3514.296008 C = 4219.878333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.080 4.080 8 C -0.065 4.065 9 C -0.136 4.136 10 C 0.075 3.925 11 N -0.507 5.507 12 C 0.032 3.968 13 C 0.213 3.787 14 C -0.523 4.523 15 H 0.062 0.938 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.061 0.939 38 H -0.007 1.007 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 10.471 -4.979 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C -0.123 4.123 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.081 4.081 8 C -0.102 4.102 9 C -0.193 4.193 10 C -0.019 4.019 11 N -0.228 5.228 12 C -0.115 4.115 13 C 0.089 3.911 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.011 0.989 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.464 10.614 -4.638 13.780 hybrid contribution 0.271 -1.478 0.075 1.504 sum -7.194 9.136 -4.563 12.492 Atomic orbital electron populations 1.21691 0.92813 1.01936 1.02398 1.21154 0.97868 0.93190 1.03020 1.20728 1.00191 0.96633 0.94789 1.21094 1.01250 0.94776 0.97321 1.21381 0.98625 0.95217 0.98923 1.21227 1.00306 1.00550 0.92138 1.20099 0.98459 0.92475 0.97084 1.20285 0.95034 0.99853 0.95034 1.21610 0.95790 1.00473 1.01463 1.19080 0.98794 0.93956 0.90072 1.59644 1.10715 1.22886 1.29539 1.22561 0.89215 0.98948 1.00735 1.19531 0.89409 0.86486 0.95663 1.21432 1.26390 1.12120 0.96148 0.91947 1.25834 0.95381 0.98203 0.99875 1.70082 1.30123 1.27447 1.29569 0.85511 0.78238 0.77887 0.79435 1.19157 1.20971 1.19578 0.91989 0.92823 0.91256 0.91957 0.90536 0.84867 0.83182 0.83549 0.89552 0.91909 0.92683 0.91667 0.95518 0.93711 0.92418 0.92037 0.98939 0.99165 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.86 71.98 0.64 -3.02 16 2 C -0.12 -4.14 4.58 29.85 0.14 -4.00 16 3 C -0.12 -4.39 4.90 -19.73 -0.10 -4.49 16 4 C -0.13 -3.73 9.61 22.25 0.21 -3.52 16 5 C -0.12 -3.21 10.04 22.29 0.22 -2.98 16 6 C -0.12 -3.45 9.67 22.25 0.22 -3.23 16 7 C -0.08 -2.77 5.15 -19.73 -0.10 -2.87 16 8 C -0.06 -2.08 5.76 29.85 0.17 -1.91 16 9 C -0.14 -4.64 9.89 71.98 0.71 -3.93 16 10 C 0.08 2.99 4.60 38.22 0.18 3.17 16 11 N -0.51 -22.58 3.79 -724.44 -2.75 -25.33 16 12 C 0.03 1.28 7.87 127.69 1.00 2.28 16 13 C 0.21 11.46 4.31 85.56 0.37 11.83 16 14 C -0.52 -29.61 8.60 25.60 0.22 -29.39 16 15 H 0.06 3.46 6.79 -2.91 -0.02 3.44 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.50 7.28 -2.39 -0.02 1.48 16 24 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 3.30 2.57 -2.39 -0.01 3.30 16 27 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.09 2.17 8.05 -2.38 -0.02 2.15 16 31 H 0.06 2.25 7.63 -2.38 -0.02 2.23 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.14 7.22 -2.39 -0.02 1.12 16 35 H 0.04 1.77 3.83 -2.39 -0.01 1.76 16 36 H 0.06 2.39 6.93 -2.39 -0.02 2.37 16 37 H 0.06 2.16 7.92 -2.39 -0.02 2.14 16 38 H -0.01 -0.38 5.03 -2.39 -0.01 -0.39 16 39 H -0.01 -0.59 7.23 -2.39 -0.02 -0.61 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.37 310.93 4.92 -59.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.01 Total: 16.66 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.34 Total: -41.29 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.46 Total: -81.34 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.37 4.92 -59.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259245540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.468 kcal (2) G-P(sol) polarization free energy of solvation -64.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds