Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47053 * 2 1 4 4 C 1.52998 * 109.46980 * 240.00316 * 2 1 3 5 5 C 1.50701 * 109.47581 * 120.00170 * 2 1 3 6 6 C 1.38234 * 119.99792 * 59.99782 * 5 2 1 7 7 C 1.38233 * 119.99996 * 179.97438 * 6 5 2 8 8 C 1.38234 * 119.99926 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00090 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47014 * 340.00763 * 9 8 7 11 11 N 1.46894 * 109.47318 * 219.99904 * 9 8 7 12 12 C 1.53002 * 109.46676 * 99.99926 * 9 8 7 13 13 C 1.50706 * 109.47153 * 184.99784 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38236 * 120.00077 * 0.27878 * 8 7 6 22 22 C 1.38234 * 119.99861 * 359.51096 * 21 8 7 23 23 H 1.09006 * 109.47082 * 299.99695 * 1 2 3 24 24 H 1.08993 * 109.47664 * 59.99500 * 1 2 3 25 25 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47033 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47443 * 300.00182 * 3 2 1 28 28 H 1.08999 * 109.47162 * 60.00523 * 3 2 1 29 29 H 1.08997 * 109.46996 * 299.99964 * 4 2 1 30 30 H 1.09004 * 109.47492 * 59.99633 * 4 2 1 31 31 H 1.09004 * 109.47491 * 180.02562 * 4 2 1 32 32 H 1.08000 * 119.99791 * 359.97438 * 6 5 2 33 33 H 1.07994 * 120.00018 * 180.02562 * 7 6 5 34 34 H 1.00902 * 111.00097 * 176.04943 * 11 9 8 35 35 H 1.00897 * 111.00410 * 300.00429 * 11 9 8 36 36 H 1.09004 * 109.47178 * 65.00574 * 12 9 8 37 37 H 1.08993 * 109.47411 * 305.00257 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.07998 * 120.00380 * 179.72743 * 21 8 7 40 40 H 1.08005 * 120.00280 * 180.27216 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6985 -2.0339 1.4491 7 6 2.1598 -2.6857 2.5775 8 6 2.9554 -2.0143 3.4868 9 6 3.4588 -2.7250 4.7166 10 1 2.8379 -3.5996 4.9105 11 7 3.3966 -1.8151 5.8681 12 6 4.9065 -3.1669 4.4935 13 6 5.3700 -3.9834 5.6724 14 1 4.6989 -4.1688 6.4980 15 6 6.6506 -4.4935 5.6971 16 7 7.4661 -4.2721 4.6893 17 14 7.2248 -5.5061 7.1580 18 1 8.6280 -5.9399 6.9388 19 1 7.1482 -4.6828 8.3916 20 1 6.3547 -6.7003 7.3051 21 6 3.2851 -0.6893 3.2707 22 6 2.8274 -0.0387 2.1402 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7488 -1.2493 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7216 -1.2491 32 1 1.0771 -2.5586 0.7384 33 1 1.8992 -3.7198 2.7481 34 1 3.6680 -2.2874 6.7174 35 1 3.9645 -0.9958 5.7127 36 1 5.5425 -2.2880 4.3878 37 1 4.9669 -3.7700 3.5876 38 1 7.1680 -3.7465 3.9305 39 1 3.9031 -0.1634 3.9834 40 1 3.0885 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259262003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = -11.107103 kcal Electronic energy + Delta-G solvation = -17811.727982 eV Core-core repulsion = 15203.680906 eV Total energy + Delta-G solvation = -2608.047076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72909 -37.07471 -34.76374 -32.54465 -30.80848 -29.24488 -27.63979 -27.33576 -27.30382 -24.30525 -22.40545 -22.00743 -20.17374 -18.92803 -17.02526 -16.38590 -15.37041 -14.80712 -14.41957 -14.30231 -13.84628 -13.76154 -13.45075 -13.28940 -12.98416 -12.70665 -12.60242 -12.36447 -11.99129 -11.78333 -11.67717 -11.31314 -11.15029 -10.96654 -10.91744 -10.67951 -10.42875 -10.32485 -10.14534 -10.09976 -8.66763 -8.53070 -8.41936 -8.22505 -7.69380 -6.42783 -4.13858 1.76635 1.80174 3.39943 3.41516 3.60206 4.14222 4.49183 4.63310 4.75038 4.96679 5.24839 5.29604 5.32106 5.34234 5.37937 5.48818 5.53769 5.68584 5.68991 5.78152 5.79391 5.79725 5.95092 5.98774 6.04098 6.14242 6.24568 6.25455 6.38341 6.50110 6.61318 6.82513 6.92449 7.08822 7.21323 7.35038 7.42423 7.95376 8.04027 8.24444 8.37428 8.79787 9.59700 10.97334 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041379 B = 0.004483 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.508162 B = 6244.929919 C = 6378.901446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.053 4.053 9 C 0.132 3.868 10 H 0.075 0.925 11 N -0.838 5.838 12 C -0.012 4.012 13 C -0.606 4.606 14 H 0.050 0.950 15 C 0.017 3.983 16 N -0.909 5.909 17 Si 1.069 2.931 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.288 1.288 21 C -0.107 4.107 22 C -0.122 4.122 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.347 0.653 35 H 0.328 0.672 36 H 0.007 0.993 37 H 0.010 0.990 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 8.877 -8.712 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.089 4.089 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.053 4.053 9 C 0.020 3.980 10 H 0.093 0.907 11 N -0.366 5.366 12 C -0.051 4.051 13 C -0.644 4.644 14 H 0.068 0.932 15 C -0.187 4.187 16 N -0.545 5.545 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.125 4.125 22 C -0.140 4.140 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.325 8.082 -8.257 16.179 hybrid contribution -0.186 0.561 -0.544 0.803 sum -11.511 8.643 -8.801 16.872 Atomic orbital electron populations 1.21875 0.94074 1.01930 1.01506 1.19433 0.95390 0.94869 0.92967 1.21950 1.01275 0.95178 1.01580 1.21887 1.01374 1.00174 0.96080 1.19619 0.99128 0.94209 0.95974 1.20812 1.00762 0.94286 0.97500 1.20977 0.98306 0.99721 0.94622 1.20147 0.95021 0.93947 0.96221 1.20385 0.97517 0.93208 0.86856 0.90661 1.59263 1.61648 1.10230 1.05509 1.19919 0.91058 0.96302 0.97774 1.21981 1.00710 1.36566 1.05157 0.93152 1.25851 0.93435 0.97408 1.02027 1.70780 1.38190 1.37610 1.07873 0.83546 0.76293 0.76007 0.74489 1.20778 1.21398 1.21407 1.20895 0.99984 0.94568 0.97091 1.21062 0.98657 0.99752 0.94487 0.92565 0.92723 0.92514 0.92272 0.92727 0.92315 0.92489 0.92707 0.92471 0.86819 0.86461 0.83988 0.86079 0.97444 0.97183 0.92073 0.86604 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.29 37.15 0.31 -1.04 16 2 C -0.03 -0.29 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.42 7.13 37.16 0.26 -1.15 16 4 C -0.14 -1.43 8.29 37.16 0.31 -1.13 16 5 C -0.09 -1.26 4.76 -104.62 -0.50 -1.76 16 6 C -0.12 -1.72 8.71 -39.58 -0.34 -2.07 16 7 C -0.12 -2.03 9.67 -39.58 -0.38 -2.41 16 8 C -0.05 -1.00 4.96 -104.62 -0.52 -1.52 16 9 C 0.13 2.78 2.99 -68.87 -0.21 2.57 16 10 H 0.08 1.64 8.00 -51.93 -0.42 1.23 16 11 N -0.84 -16.26 9.02 -5.66 -0.05 -16.31 16 12 C -0.01 -0.31 3.91 -27.88 -0.11 -0.42 16 13 C -0.61 -16.76 8.55 -34.44 -0.29 -17.05 16 14 H 0.05 1.36 7.15 -52.49 -0.38 0.98 16 15 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 16 N -0.91 -27.80 13.65 55.43 0.76 -27.04 16 17 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.11 -1.86 9.30 -39.58 -0.37 -2.23 16 22 C -0.12 -1.84 8.98 -39.58 -0.36 -2.19 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 26 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 29 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.11 1.44 7.10 -52.49 -0.37 1.07 16 33 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 34 H 0.35 6.88 7.90 -39.29 -0.31 6.57 16 35 H 0.33 6.07 7.34 -39.29 -0.29 5.78 16 36 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 37 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 38 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 39 H 0.12 1.95 6.65 -52.49 -0.35 1.60 16 40 H 0.12 1.54 5.90 -52.48 -0.31 1.23 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -30.09 317.57 -8.44 -38.53 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.43 Total: 10.52 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -2.43 Total: -30.42 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.71 Total: -43.36 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.09 -8.44 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259262003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.424 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds