Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46932 * 2 1 4 4 H 1.09007 * 109.47728 * 305.00138 * 3 2 1 5 5 C 1.53001 * 109.47315 * 65.00040 * 3 2 1 6 6 C 1.50697 * 109.47284 * 184.99806 * 3 2 1 7 7 C 1.38236 * 119.99932 * 299.72761 * 6 3 2 8 8 C 1.38233 * 119.99779 * 180.34264 * 7 6 3 9 9 C 1.38236 * 120.00586 * 359.88474 * 8 7 6 10 10 C 1.50699 * 120.00414 * 180.11197 * 9 8 7 11 11 H 1.08998 * 109.46987 * 94.46446 * 10 9 8 12 12 C 1.50694 * 109.47083 * 214.46191 * 10 9 8 13 13 H 1.08003 * 120.00265 * 0.02562 * 12 10 9 14 14 C 1.37879 * 120.00238 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99531 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00334 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46999 * 59.99926 * 16 14 12 18 18 H 1.48499 * 109.47108 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46898 * 299.99700 * 16 14 12 20 20 N 1.46897 * 109.46926 * 334.46569 * 10 9 8 21 21 C 1.46907 * 110.99903 * 294.18853 * 20 10 9 22 22 C 1.38235 * 119.99359 * 0.09058 * 9 8 7 23 23 C 1.38233 * 120.00512 * 359.97438 * 22 9 8 24 24 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47146 * 300.00082 * 1 2 3 26 26 H 1.09001 * 109.46915 * 59.99951 * 1 2 3 27 27 H 1.08998 * 109.47146 * 239.99918 * 2 1 3 28 28 H 1.09001 * 109.46915 * 120.00049 * 2 1 3 29 29 H 1.09004 * 109.47026 * 299.99845 * 5 3 2 30 30 H 1.08996 * 109.47142 * 59.99933 * 5 3 2 31 31 H 1.09003 * 109.47491 * 179.97438 * 5 3 2 32 32 H 1.07998 * 119.99841 * 0.27030 * 7 6 3 33 33 H 1.08007 * 119.99926 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00234 * 180.02562 * 15 14 12 35 35 H 1.00900 * 110.99891 * 170.23886 * 20 10 9 36 36 H 1.09003 * 109.46961 * 305.58597 * 21 20 10 37 37 H 1.08991 * 109.46916 * 65.58560 * 21 20 10 38 38 H 1.08998 * 109.47027 * 185.58710 * 21 20 10 39 39 H 1.08004 * 119.99900 * 180.02562 * 22 9 8 40 40 H 1.07994 * 120.00316 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5418 1.4444 -0.1238 7 6 4.3154 0.8216 0.8379 8 6 5.6933 0.8295 0.7280 9 6 6.2977 1.4580 -0.3447 10 6 7.7998 1.4643 -0.4657 11 1 8.1170 0.6342 -1.0968 12 6 8.2486 2.7640 -1.0824 13 1 7.5191 3.5110 -1.3586 14 6 9.5906 3.0002 -1.2930 15 7 10.4790 2.0912 -0.9552 16 14 10.1469 4.6115 -2.0568 17 1 9.7144 5.7422 -1.1968 18 1 11.6271 4.6182 -2.1750 19 1 9.5415 4.7552 -3.4051 20 7 8.3991 1.3224 0.8679 21 6 8.1060 2.4941 1.7042 22 6 5.5241 2.0802 -1.3065 23 6 4.1462 2.0736 -1.1961 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3969 30 1 2.0698 1.5875 2.1491 31 1 1.9989 3.1541 1.3076 32 1 3.8432 0.3300 1.6755 33 1 6.2977 0.3426 1.4791 34 1 11.4232 2.2574 -1.1030 35 1 9.3935 1.1645 0.8026 36 1 8.4239 3.3989 1.1861 37 1 7.0345 2.5435 1.8976 38 1 8.6423 2.4091 2.6494 39 1 5.9962 2.5709 -2.1449 40 1 3.5419 2.5594 -1.9478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259346894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = 1.615984 kcal Electronic energy + Delta-G solvation = -18065.283006 eV Core-core repulsion = 15457.787644 eV Total energy + Delta-G solvation = -2607.495362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.11785 -36.57563 -34.70834 -31.84647 -30.69674 -30.07403 -28.75715 -26.52239 -24.63718 -24.11563 -22.25988 -21.73503 -20.00264 -19.13246 -16.39702 -15.90852 -15.06582 -14.88393 -14.48434 -14.19645 -13.86043 -13.72257 -13.17448 -12.80790 -12.71328 -12.43186 -12.32114 -11.98663 -11.84710 -11.67135 -11.42411 -11.02069 -10.90055 -10.84760 -10.70769 -10.55237 -10.38122 -10.18667 -10.06050 -9.58554 -9.48134 -8.62173 -8.08615 -7.56843 -7.03822 -6.08018 -4.22888 2.19135 2.22679 3.23607 3.28928 3.31782 4.31576 4.58771 4.89368 4.96623 5.13340 5.15000 5.42522 5.53454 5.60232 5.68170 5.69849 5.78278 5.92834 5.98981 6.03905 6.04643 6.08695 6.25361 6.30765 6.41340 6.48051 6.54961 6.59668 6.84163 6.88355 6.90854 7.22918 7.31441 7.33531 7.45479 7.66815 7.73331 7.87665 8.13065 8.62999 8.84506 9.05529 9.46929 10.89673 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.036974 B = 0.005271 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.100014 B = 5311.128566 C = 5619.857214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.046 4.046 4 H 0.069 0.931 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.128 4.128 8 C -0.108 4.108 9 C -0.041 4.041 10 C 0.234 3.766 11 H 0.052 0.948 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.691 5.691 21 C 0.041 3.959 22 C -0.110 4.110 23 C -0.130 4.130 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.265 0.735 35 H 0.355 0.645 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.124 0.876 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 -1.877 2.728 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.064 4.064 4 H 0.088 0.912 5 C -0.200 4.200 6 C -0.106 4.106 7 C -0.146 4.146 8 C -0.126 4.126 9 C -0.041 4.041 10 C 0.126 3.874 11 H 0.070 0.930 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.323 5.323 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.142 0.858 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.283 -2.298 2.989 14.772 hybrid contribution 1.066 1.685 -0.870 2.175 sum -13.217 -0.614 2.119 13.400 Atomic orbital electron populations 1.21841 0.96292 1.01228 1.01661 1.21577 0.95075 0.96364 1.02266 1.20056 0.92086 0.95990 0.98266 0.91248 1.21879 1.00363 1.00645 0.97123 1.19574 0.94116 1.00699 0.96165 1.20830 0.93973 1.01170 0.98634 1.21171 0.93422 0.99358 0.98691 1.20497 0.97737 0.93191 0.92721 1.18104 0.85173 0.96311 0.87792 0.93016 1.21768 0.92185 1.02580 1.41061 0.92271 1.25001 0.96751 0.96779 0.95060 1.69730 1.01797 1.33881 1.47948 0.86624 0.77464 0.83890 0.79917 1.20277 1.21227 1.20143 1.60950 1.19912 1.37147 1.14303 1.21893 0.98976 0.94796 0.95343 1.21175 0.92593 0.99124 0.99980 1.20914 0.94887 1.01130 0.97888 0.93076 0.92627 0.92967 0.91969 0.91921 0.92843 0.92605 0.92769 0.87622 0.85528 0.92469 0.82484 0.94894 0.94058 0.95111 0.85815 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.07 16 2 C -0.12 -1.32 5.15 -26.73 -0.14 -1.45 16 3 C -0.05 -0.58 2.56 -91.78 -0.24 -0.81 16 4 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 5 C -0.14 -1.66 8.76 37.16 0.33 -1.33 16 6 C -0.11 -1.70 4.78 -104.62 -0.50 -2.20 16 7 C -0.13 -2.18 8.76 -39.58 -0.35 -2.52 16 8 C -0.11 -2.13 7.92 -39.58 -0.31 -2.44 16 9 C -0.04 -0.89 4.89 -104.62 -0.51 -1.40 16 10 C 0.23 5.77 2.87 -70.02 -0.20 5.57 16 11 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.54 -14.05 6.23 -34.44 -0.21 -14.27 16 13 H 0.06 1.56 6.31 -52.48 -0.33 1.23 16 14 C 0.07 1.76 5.28 -17.82 -0.09 1.67 16 15 N -0.89 -24.32 11.62 55.43 0.64 -23.67 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 N -0.69 -16.33 5.64 -116.50 -0.66 -16.98 16 21 C 0.04 0.90 9.92 60.07 0.60 1.50 16 22 C -0.11 -2.26 8.85 -39.58 -0.35 -2.61 16 23 C -0.13 -2.28 9.67 -39.58 -0.38 -2.67 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 29 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 1.57 7.16 -52.49 -0.38 1.19 16 33 H 0.13 2.52 7.22 -52.48 -0.38 2.14 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.35 8.97 7.08 -39.29 -0.28 8.69 16 36 H 0.03 0.81 6.63 -51.93 -0.34 0.46 16 37 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.60 6.72 -52.48 -0.35 2.25 16 40 H 0.11 1.63 7.95 -52.49 -0.42 1.21 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -26.34 312.07 -8.69 -35.03 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.35 Total: 9.17 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -2.01 Total: -24.05 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.01 Total: -40.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.34 -8.69 -35.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.642 kcal (2) G-P(sol) polarization free energy of solvation -26.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds