Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46932 * 2 1 4 4 H 1.09007 * 109.47728 * 305.00138 * 3 2 1 5 5 C 1.53001 * 109.47315 * 65.00040 * 3 2 1 6 6 C 1.50697 * 109.47284 * 184.99806 * 3 2 1 7 7 C 1.38236 * 119.99932 * 299.72761 * 6 3 2 8 8 C 1.38233 * 119.99779 * 180.34264 * 7 6 3 9 9 C 1.38236 * 120.00586 * 359.88474 * 8 7 6 10 10 C 1.50699 * 120.00414 * 180.11197 * 9 8 7 11 11 H 1.08998 * 109.46987 * 94.46446 * 10 9 8 12 12 C 1.50694 * 109.47083 * 214.46191 * 10 9 8 13 13 H 1.08003 * 120.00265 * 0.02562 * 12 10 9 14 14 C 1.37879 * 120.00238 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99531 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00334 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46999 * 59.99926 * 16 14 12 18 18 H 1.48499 * 109.47108 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46898 * 299.99700 * 16 14 12 20 20 N 1.46897 * 109.46926 * 334.46569 * 10 9 8 21 21 C 1.46907 * 110.99903 * 294.18853 * 20 10 9 22 22 C 1.38235 * 119.99359 * 0.09058 * 9 8 7 23 23 C 1.38233 * 120.00512 * 359.97438 * 22 9 8 24 24 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47146 * 300.00082 * 1 2 3 26 26 H 1.09001 * 109.46915 * 59.99951 * 1 2 3 27 27 H 1.08998 * 109.47146 * 239.99918 * 2 1 3 28 28 H 1.09001 * 109.46915 * 120.00049 * 2 1 3 29 29 H 1.09004 * 109.47026 * 299.99845 * 5 3 2 30 30 H 1.08996 * 109.47142 * 59.99933 * 5 3 2 31 31 H 1.09003 * 109.47491 * 179.97438 * 5 3 2 32 32 H 1.07998 * 119.99841 * 0.27030 * 7 6 3 33 33 H 1.08007 * 119.99926 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00234 * 180.02562 * 15 14 12 35 35 H 1.00900 * 110.99891 * 170.23886 * 20 10 9 36 36 H 1.09003 * 109.46961 * 305.58597 * 21 20 10 37 37 H 1.08991 * 109.46916 * 65.58560 * 21 20 10 38 38 H 1.08998 * 109.47027 * 185.58710 * 21 20 10 39 39 H 1.08004 * 119.99900 * 180.02562 * 22 9 8 40 40 H 1.07994 * 120.00316 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5418 1.4444 -0.1238 7 6 4.3154 0.8216 0.8379 8 6 5.6933 0.8295 0.7280 9 6 6.2977 1.4580 -0.3447 10 6 7.7998 1.4643 -0.4657 11 1 8.1170 0.6342 -1.0968 12 6 8.2486 2.7640 -1.0824 13 1 7.5191 3.5110 -1.3586 14 6 9.5906 3.0002 -1.2930 15 7 10.4790 2.0912 -0.9552 16 14 10.1469 4.6115 -2.0568 17 1 9.7144 5.7422 -1.1968 18 1 11.6271 4.6182 -2.1750 19 1 9.5415 4.7552 -3.4051 20 7 8.3991 1.3224 0.8679 21 6 8.1060 2.4941 1.7042 22 6 5.5241 2.0802 -1.3065 23 6 4.1462 2.0736 -1.1961 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3969 30 1 2.0698 1.5875 2.1491 31 1 1.9989 3.1541 1.3076 32 1 3.8432 0.3300 1.6755 33 1 6.2977 0.3426 1.4791 34 1 11.4232 2.2574 -1.1030 35 1 9.3935 1.1645 0.8026 36 1 8.4239 3.3989 1.1861 37 1 7.0345 2.5435 1.8976 38 1 8.6423 2.4091 2.6494 39 1 5.9962 2.5709 -2.1449 40 1 3.5419 2.5594 -1.9478 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259346894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = -11.596839 kcal Electronic energy + Delta-G solvation = -18065.855957 eV Core-core repulsion = 15457.787644 eV Total energy + Delta-G solvation = -2608.068313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55585 -38.03631 -36.18034 -33.82340 -32.00561 -31.54290 -29.99120 -28.18642 -26.35800 -25.41203 -23.62332 -23.29769 -21.45340 -20.46402 -18.33329 -17.50868 -16.53654 -16.41910 -15.97292 -15.74006 -15.14553 -15.07365 -14.57391 -14.37152 -14.22509 -13.78097 -13.69344 -13.59095 -13.01491 -12.90580 -12.80679 -12.57583 -12.50917 -12.45141 -12.17464 -11.98109 -11.70514 -11.57111 -11.43300 -11.26015 -11.09497 -10.65645 -9.56996 -9.10845 -9.00162 -8.09440 -6.32274 0.71148 0.73524 1.36635 1.37464 1.44858 2.36436 3.03832 3.14153 3.85977 3.97389 4.08093 4.25792 4.35328 4.37724 4.52242 4.60316 4.66082 4.73642 4.79010 4.82447 4.89817 4.96161 5.04616 5.11997 5.20212 5.23709 5.25826 5.32270 5.34819 5.39634 5.49820 5.52514 5.59404 5.65202 5.80505 5.91392 6.02433 6.12475 6.39726 6.69648 6.83237 7.03964 7.40442 8.84962 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.036974 B = 0.005271 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.100014 B = 5311.128566 C = 5619.857214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.044 4.044 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.071 4.071 10 C 0.237 3.763 11 H 0.013 0.987 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.272 1.272 20 N -0.685 5.685 21 C 0.050 3.950 22 C -0.126 4.126 23 C -0.130 4.130 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.266 0.734 35 H 0.343 0.657 36 H 0.007 0.993 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.505 -1.439 3.384 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.062 4.062 4 H 0.097 0.903 5 C -0.198 4.198 6 C -0.093 4.093 7 C -0.139 4.139 8 C -0.133 4.133 9 C -0.071 4.071 10 C 0.129 3.871 11 H 0.031 0.969 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.315 5.315 21 C -0.100 4.100 22 C -0.145 4.145 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.835 -1.861 3.645 17.325 hybrid contribution 1.760 1.506 -1.063 2.549 sum -15.075 -0.354 2.582 15.298 Atomic orbital electron populations 1.21809 0.94403 1.02068 1.02352 1.21554 0.96713 0.95055 1.01827 1.20135 0.89225 0.97349 0.99511 0.90306 1.21869 1.01940 0.99868 0.96140 1.20014 0.96324 0.98293 0.94642 1.21084 0.92780 1.00576 0.99506 1.21143 0.94773 0.99432 0.97956 1.20297 0.96095 0.95995 0.94760 1.17912 0.87479 0.94195 0.87503 0.96927 1.21948 0.92288 1.03037 1.41076 0.92944 1.25672 0.96875 0.99562 0.95577 1.69834 1.01879 1.35244 1.48716 0.85720 0.77077 0.80413 0.79132 1.20133 1.20796 1.19761 1.60962 1.18832 1.37688 1.14035 1.21836 0.99683 0.92919 0.95583 1.21131 0.94064 0.99830 0.99460 1.21172 0.93712 1.00967 0.98945 0.92265 0.91675 0.92526 0.92990 0.91887 0.90521 0.92590 0.93588 0.84875 0.86148 0.92499 0.83865 0.97489 0.93257 0.92917 0.87471 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 71.98 0.70 -1.52 16 2 C -0.11 -2.22 5.15 30.59 0.16 -2.07 16 3 C -0.04 -0.97 2.56 -11.54 -0.03 -0.99 16 4 H 0.08 1.63 7.88 -2.38 -0.02 1.61 16 5 C -0.14 -2.74 8.76 71.98 0.63 -2.11 16 6 C -0.09 -2.77 4.78 -19.87 -0.09 -2.87 16 7 C -0.12 -3.89 8.76 22.27 0.20 -3.70 16 8 C -0.11 -4.50 7.92 22.27 0.18 -4.32 16 9 C -0.07 -3.17 4.89 -19.87 -0.10 -3.27 16 10 C 0.24 12.22 2.87 43.42 0.12 12.34 16 11 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 12 C -0.54 -29.48 6.23 25.60 0.16 -29.32 16 13 H 0.05 2.85 6.31 -2.91 -0.02 2.83 16 14 C 0.02 1.25 5.28 84.66 0.45 1.70 16 15 N -0.92 -51.18 11.62 21.45 0.25 -50.93 16 16 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 N -0.68 -33.30 5.64 -522.49 -2.95 -36.25 16 21 C 0.05 2.25 9.92 127.69 1.27 3.52 16 22 C -0.13 -5.25 8.85 22.27 0.20 -5.05 16 23 C -0.13 -4.39 9.67 22.27 0.22 -4.17 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.23 7.58 -2.39 -0.02 1.21 16 29 H 0.08 1.16 6.57 -2.38 -0.02 1.14 16 30 H 0.06 1.09 7.38 -2.39 -0.02 1.07 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 3.52 7.16 -2.91 -0.02 3.50 16 33 H 0.12 4.79 7.22 -2.91 -0.02 4.77 16 34 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.34 17.93 7.08 -89.69 -0.63 17.29 16 36 H 0.01 0.33 6.63 -2.39 -0.02 0.31 16 37 H 0.05 2.11 6.44 -2.39 -0.02 2.09 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.11 4.70 6.72 -2.91 -0.02 4.68 16 40 H 0.13 3.71 7.95 -2.91 -0.02 3.68 16 Total: -1.00 -57.60 312.07 3.75 -53.85 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.38 Total: 29.78 kcal Atomic # 6 Polarization: -45.87 SS G_CDS: 4.04 Total: -41.83 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.70 Total: -87.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -57.60 3.75 -53.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.256 kcal (2) G-P(sol) polarization free energy of solvation -57.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds