Wall clock time and date at job start Mon Mar 30 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 H 1.08997 * 109.47236 * 54.99753 * 3 2 1 5 5 C 1.53005 * 109.47062 * 294.99788 * 3 2 1 6 6 C 1.50704 * 109.47240 * 174.99962 * 3 2 1 7 7 C 1.38237 * 120.00034 * 239.99686 * 6 3 2 8 8 C 1.38234 * 119.99890 * 179.97438 * 7 6 3 9 9 C 1.38231 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99918 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.46805 * 270.00231 * 10 9 8 12 12 C 1.50695 * 109.47010 * 150.00468 * 10 9 8 13 13 H 1.07998 * 120.00454 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99685 * 180.02562 * 12 10 9 15 15 N 1.31513 * 120.00353 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99892 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47217 * 59.99740 * 16 14 12 18 18 H 1.48504 * 109.47470 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47220 * 299.99850 * 16 14 12 20 20 N 1.46895 * 109.47380 * 29.99690 * 10 9 8 21 21 C 1.46908 * 110.99768 * 65.64948 * 20 10 9 22 22 C 1.38231 * 120.00206 * 0.27753 * 9 8 7 23 23 C 1.38232 * 119.99921 * 59.97612 * 6 3 2 24 24 H 1.09005 * 109.47136 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47166 * 300.00118 * 1 2 3 27 27 H 1.08997 * 109.47258 * 239.99503 * 2 1 3 28 28 H 1.09005 * 109.47136 * 119.99688 * 2 1 3 29 29 H 1.08997 * 109.47066 * 300.00069 * 5 3 2 30 30 H 1.08993 * 109.46715 * 59.99767 * 5 3 2 31 31 H 1.09002 * 109.47206 * 180.02562 * 5 3 2 32 32 H 1.08001 * 119.99741 * 359.97438 * 7 6 3 33 33 H 1.07999 * 119.99820 * 180.02562 * 8 7 6 34 34 H 0.96998 * 120.00246 * 179.97438 * 15 14 12 35 35 H 1.00898 * 111.00153 * 189.60124 * 20 10 9 36 36 H 1.09001 * 109.46597 * 305.11163 * 21 20 10 37 37 H 1.08991 * 109.46958 * 65.10651 * 21 20 10 38 38 H 1.08995 * 109.47046 * 185.11391 * 21 20 10 39 39 H 1.07998 * 120.00597 * 179.72144 * 22 9 8 40 40 H 1.07999 * 120.00114 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0749 1.3099 9 6 6.2971 1.4463 0.3519 10 6 7.7990 1.4472 0.4763 11 1 8.2052 2.3219 -0.0318 12 6 8.3559 0.1966 -0.1536 13 1 7.6891 -0.5267 -0.5992 14 6 9.7168 -0.0246 -0.1603 15 7 10.5289 0.8559 0.3827 16 14 10.4072 -1.5751 -0.9405 17 1 10.0299 -1.6170 -2.3762 18 1 11.8872 -1.5743 -0.8180 19 1 9.8534 -2.7665 -0.2482 20 7 8.1727 1.4885 1.8964 21 6 7.7574 0.2596 2.5859 22 6 5.6931 0.8215 -0.7230 23 6 4.3151 0.8163 -0.8345 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0698 1.5875 -2.1492 30 1 0.5489 2.1251 -1.3970 31 1 1.9989 3.1541 -1.3076 32 1 3.5420 2.5644 1.9447 33 1 5.9960 2.5662 2.1478 34 1 11.4863 0.7000 0.3784 35 1 9.1632 1.6470 2.0052 36 1 6.6894 0.1018 2.4354 37 1 8.3104 -0.5883 2.1820 38 1 7.9640 0.3536 3.6520 39 1 6.2973 0.3342 -1.4739 40 1 3.8430 0.3240 -1.6718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259346897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:55 Heat of formation + Delta-G solvation = 1.743734 kcal Electronic energy + Delta-G solvation = -18079.635466 eV Core-core repulsion = 15472.145644 eV Total energy + Delta-G solvation = -2607.489822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.12121 -36.57314 -34.69889 -31.82736 -30.73473 -30.10304 -28.68676 -26.58793 -24.60150 -24.11418 -22.29643 -21.67369 -20.11137 -19.05361 -16.38022 -15.92858 -15.12756 -14.93050 -14.36619 -14.13470 -13.89687 -13.68380 -13.26733 -12.86325 -12.65096 -12.41136 -12.35586 -12.01669 -11.82161 -11.60344 -11.52941 -10.98460 -10.89273 -10.81402 -10.71855 -10.57265 -10.36397 -10.17805 -10.10343 -9.56940 -9.46993 -8.62109 -8.09556 -7.57805 -7.03660 -6.07684 -4.22551 2.18598 2.22307 3.23716 3.29063 3.31824 4.31972 4.58117 4.89838 4.96790 5.13424 5.16033 5.42693 5.53373 5.59908 5.67801 5.69679 5.78015 5.94352 5.96784 6.02564 6.07680 6.10019 6.22563 6.30632 6.41396 6.48038 6.55279 6.61372 6.83070 6.87744 6.90621 7.19087 7.31080 7.33165 7.46410 7.65072 7.73850 7.87362 8.13692 8.63060 8.84527 9.05507 9.47487 10.90220 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030767 B = 0.005540 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.850591 B = 5052.828710 C = 5444.532437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.045 4.045 4 H 0.069 0.931 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.041 4.041 10 C 0.235 3.765 11 H 0.052 0.948 12 C -0.538 4.538 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.691 5.691 21 C 0.046 3.954 22 C -0.110 4.110 23 C -0.126 4.126 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.265 0.735 35 H 0.355 0.645 36 H 0.043 0.957 37 H 0.025 0.975 38 H 0.030 0.970 39 H 0.125 0.875 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 0.470 -0.273 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.064 4.064 4 H 0.088 0.912 5 C -0.200 4.200 6 C -0.105 4.105 7 C -0.150 4.150 8 C -0.126 4.126 9 C -0.042 4.042 10 C 0.127 3.873 11 H 0.070 0.930 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 N -0.323 5.323 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.145 4.145 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.143 0.857 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.593 0.874 -0.041 14.619 hybrid contribution 1.211 -1.612 -0.771 2.158 sum -13.382 -0.738 -0.812 13.427 Atomic orbital electron populations 1.21839 0.96279 1.01241 1.01636 1.21580 0.95080 0.96374 1.02311 1.20057 0.92071 0.95995 0.98252 0.91232 1.21879 1.00385 1.00608 0.97141 1.19577 0.94115 1.00631 0.96187 1.20928 0.95000 1.01287 0.97799 1.21143 0.92499 0.99399 0.99540 1.20491 0.97765 0.93253 0.92686 1.18092 0.85712 0.96646 0.86892 0.93031 1.21805 0.91963 1.06071 1.37943 0.92186 1.24996 0.97008 0.96567 0.94999 1.69727 1.03812 1.34910 1.44952 0.86632 0.77811 0.83523 0.79968 1.20160 1.21228 1.20285 1.60952 1.23792 1.34034 1.13520 1.21816 0.99366 0.93704 0.95570 1.21235 0.93578 0.99031 0.99023 1.20828 0.93900 1.00994 0.98734 0.92629 0.93080 0.92963 0.91924 0.91967 0.92603 0.92837 0.92759 0.87612 0.85639 0.92480 0.82477 0.93848 0.95594 0.95088 0.85681 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.15 0.36 -1.09 16 2 C -0.12 -1.36 5.14 -26.74 -0.14 -1.50 16 3 C -0.05 -0.58 2.56 -91.77 -0.24 -0.81 16 4 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 5 C -0.14 -1.64 8.76 37.16 0.33 -1.31 16 6 C -0.11 -1.69 4.78 -104.62 -0.50 -2.19 16 7 C -0.13 -2.26 9.67 -39.58 -0.38 -2.65 16 8 C -0.11 -2.12 8.27 -39.59 -0.33 -2.45 16 9 C -0.04 -0.90 4.64 -104.62 -0.49 -1.39 16 10 C 0.23 5.78 2.87 -70.02 -0.20 5.58 16 11 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.54 -14.09 6.46 -34.44 -0.22 -14.31 16 13 H 0.06 1.57 6.05 -52.49 -0.32 1.25 16 14 C 0.07 1.77 5.23 -17.82 -0.09 1.67 16 15 N -0.89 -24.36 11.62 55.43 0.64 -23.71 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 N -0.69 -16.34 5.71 -116.50 -0.67 -17.01 16 21 C 0.05 1.03 9.88 60.07 0.59 1.62 16 22 C -0.11 -2.25 8.88 -39.58 -0.35 -2.60 16 23 C -0.13 -2.20 8.76 -39.58 -0.35 -2.54 16 24 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.75 7.57 -51.93 -0.39 0.35 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.65 7.39 -51.93 -0.38 0.26 16 30 H 0.05 0.52 6.56 -51.93 -0.34 0.17 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 1.57 7.95 -52.49 -0.42 1.15 16 33 H 0.13 2.49 7.40 -52.49 -0.39 2.10 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.35 8.99 7.08 -39.29 -0.28 8.71 16 36 H 0.04 0.95 6.45 -51.93 -0.34 0.61 16 37 H 0.03 0.63 7.02 -51.93 -0.36 0.26 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.13 2.63 6.44 -52.49 -0.34 2.29 16 40 H 0.11 1.63 7.16 -52.49 -0.38 1.25 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -26.36 312.48 -8.69 -35.05 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.35 Total: 9.11 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.01 Total: -23.96 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.02 Total: -40.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.36 -8.69 -35.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.798 kcal (2) G-P(sol) polarization free energy of solvation -26.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds