Wall clock time and date at job start Mon Mar 30 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 H 1.08997 * 109.47236 * 54.99753 * 3 2 1 5 5 C 1.53005 * 109.47062 * 294.99788 * 3 2 1 6 6 C 1.50704 * 109.47240 * 174.99962 * 3 2 1 7 7 C 1.38237 * 120.00034 * 239.99686 * 6 3 2 8 8 C 1.38234 * 119.99890 * 179.97438 * 7 6 3 9 9 C 1.38231 * 120.00091 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99918 * 180.02562 * 9 8 7 11 11 H 1.09004 * 109.46805 * 270.00231 * 10 9 8 12 12 C 1.50695 * 109.47010 * 150.00468 * 10 9 8 13 13 H 1.07998 * 120.00454 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99685 * 180.02562 * 12 10 9 15 15 N 1.31513 * 120.00353 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99892 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47217 * 59.99740 * 16 14 12 18 18 H 1.48504 * 109.47470 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47220 * 299.99850 * 16 14 12 20 20 N 1.46895 * 109.47380 * 29.99690 * 10 9 8 21 21 C 1.46908 * 110.99768 * 65.64948 * 20 10 9 22 22 C 1.38231 * 120.00206 * 0.27753 * 9 8 7 23 23 C 1.38232 * 119.99921 * 59.97612 * 6 3 2 24 24 H 1.09005 * 109.47136 * 60.00312 * 1 2 3 25 25 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47166 * 300.00118 * 1 2 3 27 27 H 1.08997 * 109.47258 * 239.99503 * 2 1 3 28 28 H 1.09005 * 109.47136 * 119.99688 * 2 1 3 29 29 H 1.08997 * 109.47066 * 300.00069 * 5 3 2 30 30 H 1.08993 * 109.46715 * 59.99767 * 5 3 2 31 31 H 1.09002 * 109.47206 * 180.02562 * 5 3 2 32 32 H 1.08001 * 119.99741 * 359.97438 * 7 6 3 33 33 H 1.07999 * 119.99820 * 180.02562 * 8 7 6 34 34 H 0.96998 * 120.00246 * 179.97438 * 15 14 12 35 35 H 1.00898 * 111.00153 * 189.60124 * 20 10 9 36 36 H 1.09001 * 109.46597 * 305.11163 * 21 20 10 37 37 H 1.08991 * 109.46958 * 65.10651 * 21 20 10 38 38 H 1.08995 * 109.47046 * 185.11391 * 21 20 10 39 39 H 1.07998 * 120.00597 * 179.72144 * 22 9 8 40 40 H 1.07999 * 120.00114 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0749 1.3099 9 6 6.2971 1.4463 0.3519 10 6 7.7990 1.4472 0.4763 11 1 8.2052 2.3219 -0.0318 12 6 8.3559 0.1966 -0.1536 13 1 7.6891 -0.5267 -0.5992 14 6 9.7168 -0.0246 -0.1603 15 7 10.5289 0.8559 0.3827 16 14 10.4072 -1.5751 -0.9405 17 1 10.0299 -1.6170 -2.3762 18 1 11.8872 -1.5743 -0.8180 19 1 9.8534 -2.7665 -0.2482 20 7 8.1727 1.4885 1.8964 21 6 7.7574 0.2596 2.5859 22 6 5.6931 0.8215 -0.7230 23 6 4.3151 0.8163 -0.8345 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0698 1.5875 -2.1492 30 1 0.5489 2.1251 -1.3970 31 1 1.9989 3.1541 -1.3076 32 1 3.5420 2.5644 1.9447 33 1 5.9960 2.5662 2.1478 34 1 11.4863 0.7000 0.3784 35 1 9.1632 1.6470 2.0052 36 1 6.6894 0.1018 2.4354 37 1 8.3104 -0.5883 2.1820 38 1 7.9640 0.3536 3.6520 39 1 6.2973 0.3342 -1.4739 40 1 3.8430 0.3240 -1.6718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259346897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:55 Heat of formation + Delta-G solvation = -11.516463 kcal Electronic energy + Delta-G solvation = -18080.210472 eV Core-core repulsion = 15472.145644 eV Total energy + Delta-G solvation = -2608.064827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55699 -38.03401 -36.17588 -33.80868 -32.09937 -31.49503 -29.93980 -28.25516 -26.31119 -25.43170 -23.69933 -23.19424 -21.57041 -20.37481 -18.34850 -17.47475 -16.71961 -16.30992 -15.99432 -15.61341 -15.23207 -15.01734 -14.59358 -14.46122 -14.06622 -13.99466 -13.71266 -13.44487 -13.13945 -12.85997 -12.81739 -12.58921 -12.52853 -12.33034 -12.19400 -11.99287 -11.76020 -11.53972 -11.45057 -11.26779 -11.07965 -10.65888 -9.57614 -9.11087 -9.00307 -8.09398 -6.32081 0.71000 0.73508 1.36586 1.37388 1.44700 2.36529 3.04080 3.14458 3.86401 3.96843 4.07560 4.25244 4.32495 4.38859 4.53256 4.60186 4.65842 4.73196 4.78691 4.82170 4.89672 4.95279 5.03465 5.11753 5.19403 5.23479 5.25302 5.29059 5.34225 5.39115 5.48850 5.52877 5.58983 5.65753 5.80452 5.91343 6.01297 6.13634 6.39652 6.69905 6.83129 7.03542 7.40843 8.85340 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030767 B = 0.005540 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.850591 B = 5052.828710 C = 5444.532437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.043 4.043 4 H 0.083 0.917 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.071 4.071 10 C 0.238 3.762 11 H 0.013 0.987 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.276 1.276 20 N -0.685 5.685 21 C 0.056 3.944 22 C -0.127 4.127 23 C -0.122 4.122 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.265 0.735 35 H 0.343 0.657 36 H 0.046 0.954 37 H 0.000 1.000 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.868 -0.013 -0.247 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.061 4.061 4 H 0.101 0.899 5 C -0.199 4.199 6 C -0.092 4.092 7 C -0.147 4.147 8 C -0.132 4.132 9 C -0.071 4.071 10 C 0.129 3.871 11 H 0.031 0.969 12 C -0.586 4.586 13 H 0.073 0.927 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.776 3.224 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.201 1.201 20 N -0.315 5.315 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.239 0.390 -0.018 17.243 hybrid contribution 1.935 -1.428 -0.775 2.526 sum -15.304 -1.038 -0.793 15.360 Atomic orbital electron populations 1.21803 0.94285 1.02023 1.02455 1.21560 0.96815 0.95287 1.01620 1.20136 0.89208 0.97153 0.99645 0.89876 1.21871 1.01944 0.99987 0.96047 1.20018 0.96282 0.98245 0.94702 1.21239 0.94007 1.00799 0.98646 1.21117 0.93732 0.99454 0.98931 1.20282 0.96171 0.96054 0.94642 1.17908 0.87919 0.94424 0.86829 0.96934 1.22002 0.92198 1.06482 1.37876 0.92734 1.25671 0.97346 0.99134 0.95545 1.69832 1.03869 1.36241 1.45804 0.85726 0.77173 0.80282 0.79191 1.19748 1.20827 1.20145 1.60969 1.22725 1.34626 1.13185 1.21756 0.99049 0.92002 0.96603 1.21182 0.95027 0.99779 0.98522 1.21026 0.92583 1.00709 0.99720 0.91652 0.92427 0.92284 0.92305 0.93085 0.92935 0.90504 0.93242 0.84638 0.86258 0.92525 0.83846 0.93508 0.98108 0.92625 0.87373 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.67 71.98 0.70 -1.56 16 2 C -0.12 -2.33 5.14 30.59 0.16 -2.17 16 3 C -0.04 -0.94 2.56 -11.54 -0.03 -0.97 16 4 H 0.08 1.65 7.88 -2.39 -0.02 1.63 16 5 C -0.14 -2.73 8.76 71.98 0.63 -2.10 16 6 C -0.09 -2.76 4.78 -19.86 -0.09 -2.85 16 7 C -0.13 -4.15 9.67 22.27 0.22 -3.93 16 8 C -0.11 -4.47 8.27 22.27 0.18 -4.28 16 9 C -0.07 -3.17 4.64 -19.87 -0.09 -3.26 16 10 C 0.24 12.21 2.87 43.42 0.12 12.34 16 11 H 0.01 0.74 8.14 -2.38 -0.02 0.73 16 12 C -0.55 -29.56 6.46 25.60 0.17 -29.39 16 13 H 0.05 2.95 6.05 -2.91 -0.02 2.93 16 14 C 0.02 1.24 5.23 84.66 0.44 1.68 16 15 N -0.92 -51.31 11.62 21.45 0.25 -51.06 16 16 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 N -0.68 -33.35 5.71 -522.48 -2.99 -36.33 16 21 C 0.06 2.54 9.88 127.69 1.26 3.80 16 22 C -0.13 -5.24 8.88 22.27 0.20 -5.04 16 23 C -0.12 -4.09 8.76 22.27 0.20 -3.90 16 24 H 0.06 0.88 6.57 -2.38 -0.02 0.86 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.23 7.57 -2.39 -0.02 1.21 16 28 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.05 1.05 7.39 -2.39 -0.02 1.03 16 30 H 0.08 1.15 6.56 -2.39 -0.02 1.13 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.14 3.54 7.95 -2.91 -0.02 3.52 16 33 H 0.12 4.74 7.40 -2.91 -0.02 4.72 16 34 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.34 17.97 7.08 -89.70 -0.63 17.34 16 36 H 0.05 2.05 6.45 -2.39 -0.02 2.03 16 37 H 0.00 0.01 7.02 -2.39 -0.02 0.00 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.11 4.74 6.44 -2.91 -0.02 4.72 16 40 H 0.13 3.67 7.16 -2.91 -0.02 3.65 16 Total: -1.00 -57.67 312.48 3.72 -53.95 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.38 Total: 29.69 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 4.05 Total: -41.65 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.74 Total: -87.39 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -57.67 3.72 -53.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.434 kcal (2) G-P(sol) polarization free energy of solvation -57.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds