Wall clock time and date at job start Mon Mar 30 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.09001 * 109.46867 * 304.99852 * 3 2 1 5 5 C 1.52993 * 109.46879 * 64.99881 * 3 2 1 6 6 C 1.50695 * 109.46792 * 184.99946 * 3 2 1 7 7 C 1.38237 * 120.00248 * 120.00140 * 6 3 2 8 8 C 1.38232 * 120.00563 * 179.97438 * 7 6 3 9 9 C 1.38237 * 119.99541 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99852 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46957 * 13.61145 * 10 9 8 12 12 C 1.50699 * 109.46699 * 253.61458 * 10 9 8 13 13 H 1.08006 * 120.00302 * 0.02562 * 12 10 9 14 14 C 1.37875 * 120.00013 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99730 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00243 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47478 * 120.00032 * 16 14 12 19 19 H 1.48507 * 109.46948 * 240.00061 * 16 14 12 20 20 N 1.46895 * 109.47421 * 133.61475 * 10 9 8 21 21 C 1.46900 * 111.00012 * 276.61888 * 20 10 9 22 22 C 1.38234 * 120.00314 * 0.25420 * 9 8 7 23 23 C 1.38235 * 120.00354 * 300.01921 * 6 3 2 24 24 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47097 * 300.00030 * 1 2 3 26 26 H 1.09006 * 109.47257 * 59.99997 * 1 2 3 27 27 H 1.08999 * 109.47097 * 239.99970 * 2 1 3 28 28 H 1.09002 * 109.46759 * 119.99962 * 2 1 3 29 29 H 1.08999 * 109.47244 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47323 * 299.99778 * 5 3 2 31 31 H 1.09001 * 109.47395 * 60.00295 * 5 3 2 32 32 H 1.08005 * 119.99672 * 359.97438 * 7 6 3 33 33 H 1.07996 * 120.00100 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00021 * 179.97438 * 15 14 12 35 35 H 1.00909 * 110.99710 * 40.57463 * 20 10 9 36 36 H 1.08997 * 109.47125 * 64.91861 * 21 20 10 37 37 H 1.09005 * 109.46806 * 184.90957 * 21 20 10 38 38 H 1.08994 * 109.47083 * 304.91082 * 21 20 10 39 39 H 1.08000 * 120.00219 * 179.72968 * 22 9 8 40 40 H 1.08011 * 119.99603 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 6 4.1463 2.0735 -1.1960 8 6 5.5240 2.0755 -1.3094 9 6 6.2972 1.4478 -0.3507 10 6 7.7992 1.4496 -0.4745 11 1 8.1010 2.1802 -1.2250 12 6 8.2705 0.0795 -0.8891 13 1 7.5541 -0.7131 -1.0476 14 6 9.6162 -0.1619 -1.0672 15 7 10.4885 0.8033 -0.8748 16 14 10.2005 -1.8599 -1.5818 17 1 9.0302 -2.7618 -1.7315 18 1 10.9210 -1.7642 -2.8767 19 1 11.1147 -2.4039 -0.5457 20 7 8.3969 1.8020 0.8202 21 6 8.4368 3.2591 1.0024 22 6 5.6926 0.8136 0.7184 23 6 4.3152 0.8163 0.8346 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9989 3.1540 1.3076 30 1 0.5489 2.1252 1.3968 31 1 2.0698 1.5875 2.1491 32 1 3.5421 2.5635 -1.9452 33 1 5.9962 2.5675 -2.1468 34 1 11.4354 0.6334 -0.9998 35 1 7.9041 1.3559 1.5794 36 1 7.4195 3.6470 1.0528 37 1 8.9619 3.4952 1.9280 38 1 8.9588 3.7162 0.1618 39 1 6.2966 0.3195 1.4651 40 1 3.8429 0.3240 1.6720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259346900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:58 Heat of formation + Delta-G solvation = 6.130543 kcal Electronic energy + Delta-G solvation = -17930.247097 eV Core-core repulsion = 15322.947501 eV Total energy + Delta-G solvation = -2607.299596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24479 -36.58342 -34.58380 -31.98502 -30.76712 -30.29027 -28.87482 -26.73667 -24.53881 -23.69338 -22.36045 -22.16496 -20.12901 -19.32710 -16.50391 -16.13958 -15.16715 -14.88471 -14.29461 -14.24552 -13.99876 -13.69842 -13.10519 -12.99634 -12.85076 -12.54825 -12.35696 -12.05894 -11.80913 -11.76681 -11.59529 -11.13644 -10.91964 -10.87393 -10.77757 -10.61107 -10.55681 -10.29383 -10.12876 -9.63634 -9.16528 -8.38113 -8.28402 -7.74046 -6.86284 -5.84742 -3.97727 2.04316 2.04725 3.35302 3.43558 3.47628 4.38368 4.55522 4.81808 4.89413 5.08341 5.33103 5.36048 5.46078 5.51811 5.55842 5.57154 5.68207 5.87919 5.91036 5.93398 5.95889 5.99475 6.03547 6.16907 6.24407 6.34132 6.36569 6.41256 6.44222 6.63513 6.75373 6.80676 7.11217 7.14691 7.15833 7.54625 7.69868 7.96440 8.24952 8.63418 8.81546 9.16205 9.70021 11.20041 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.005582 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.445044 B = 5015.234705 C = 5609.312104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.046 4.046 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.070 4.070 10 C 0.250 3.750 11 H 0.042 0.958 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.085 3.915 15 N -0.851 5.851 16 Si 0.884 3.116 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.284 1.284 20 N -0.651 5.651 21 C 0.037 3.963 22 C -0.116 4.116 23 C -0.117 4.117 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.255 0.745 35 H 0.313 0.687 36 H -0.007 1.007 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 2.195 2.842 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.064 4.064 4 H 0.089 0.911 5 C -0.200 4.200 6 C -0.106 4.106 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.072 4.072 10 C 0.143 3.857 11 H 0.060 0.940 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.122 4.122 15 N -0.486 5.486 16 Si 0.712 3.288 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.210 1.210 20 N -0.279 5.279 21 C -0.114 4.114 22 C -0.134 4.134 23 C -0.135 4.135 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.012 0.988 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.571 2.227 2.614 14.970 hybrid contribution -0.477 -0.731 -0.135 0.883 sum -15.048 1.497 2.479 15.324 Atomic orbital electron populations 1.21837 0.96187 1.01325 1.01649 1.21587 0.95175 0.96226 1.02398 1.20060 0.91819 0.96167 0.98347 0.91135 1.21880 1.00532 1.00542 0.97077 1.19579 0.94308 1.00610 0.96077 1.20912 0.94765 1.00598 0.97666 1.21078 0.93173 1.00587 0.99245 1.21533 1.00381 0.92647 0.92631 1.18390 0.81201 0.97671 0.88484 0.93965 1.20893 0.91990 0.95263 1.47816 0.92751 1.24918 0.96823 0.96115 0.94309 1.70084 1.01212 1.31302 1.46005 0.86695 0.78771 0.85284 0.78065 1.19907 1.21181 1.21049 1.60994 1.58016 1.04872 1.04060 1.22078 0.96845 0.91942 1.00502 1.20968 0.93881 0.99602 0.98962 1.20824 0.93773 1.00296 0.98627 0.92999 0.92621 0.92942 0.91872 0.91883 0.92804 0.92703 0.92592 0.87345 0.86778 0.93547 0.86900 0.98847 0.93829 0.92561 0.86354 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.67 37.16 0.36 -1.04 16 2 C -0.12 -1.32 5.14 -26.73 -0.14 -1.45 16 3 C -0.05 -0.56 2.56 -91.78 -0.24 -0.79 16 4 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 5 C -0.14 -1.56 8.76 37.15 0.33 -1.23 16 6 C -0.11 -1.64 4.78 -104.63 -0.50 -2.15 16 7 C -0.12 -2.02 9.67 -39.58 -0.38 -2.41 16 8 C -0.12 -2.37 9.67 -39.58 -0.38 -2.75 16 9 C -0.07 -1.49 4.63 -104.62 -0.48 -1.98 16 10 C 0.25 6.19 2.08 -70.02 -0.15 6.05 16 11 H 0.04 1.15 7.55 -51.93 -0.39 0.76 16 12 C -0.52 -14.30 8.66 -34.44 -0.30 -14.60 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 15 N -0.85 -24.62 12.77 55.43 0.71 -23.91 16 16 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 N -0.65 -15.47 5.89 -116.50 -0.69 -16.15 16 21 C 0.04 0.77 10.52 60.06 0.63 1.40 16 22 C -0.12 -2.25 8.97 -39.58 -0.35 -2.60 16 23 C -0.12 -1.94 8.76 -39.58 -0.35 -2.29 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.47 6.56 -51.93 -0.34 0.13 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 31 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 32 H 0.11 1.54 7.95 -52.48 -0.42 1.12 16 33 H 0.11 2.14 7.99 -52.49 -0.42 1.72 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.31 6.97 6.80 -39.29 -0.27 6.70 16 36 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.23 7.94 -51.93 -0.41 0.81 16 39 H 0.12 2.28 6.89 -52.49 -0.36 1.92 16 40 H 0.11 1.57 7.16 -52.48 -0.38 1.19 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -29.02 321.82 -8.78 -37.80 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.58 Total: 4.60 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.05 Total: -23.58 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.02 Total: -40.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.02 -8.78 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.931 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds