Wall clock time and date at job start Mon Mar 30 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.09001 * 109.46867 * 304.99852 * 3 2 1 5 5 C 1.52993 * 109.46879 * 64.99881 * 3 2 1 6 6 C 1.50695 * 109.46792 * 184.99946 * 3 2 1 7 7 C 1.38237 * 120.00248 * 120.00140 * 6 3 2 8 8 C 1.38232 * 120.00563 * 179.97438 * 7 6 3 9 9 C 1.38237 * 119.99541 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99852 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46957 * 13.61145 * 10 9 8 12 12 C 1.50699 * 109.46699 * 253.61458 * 10 9 8 13 13 H 1.08006 * 120.00302 * 0.02562 * 12 10 9 14 14 C 1.37875 * 120.00013 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99730 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00243 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47178 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47478 * 120.00032 * 16 14 12 19 19 H 1.48507 * 109.46948 * 240.00061 * 16 14 12 20 20 N 1.46895 * 109.47421 * 133.61475 * 10 9 8 21 21 C 1.46900 * 111.00012 * 276.61888 * 20 10 9 22 22 C 1.38234 * 120.00314 * 0.25420 * 9 8 7 23 23 C 1.38235 * 120.00354 * 300.01921 * 6 3 2 24 24 H 1.08999 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47097 * 300.00030 * 1 2 3 26 26 H 1.09006 * 109.47257 * 59.99997 * 1 2 3 27 27 H 1.08999 * 109.47097 * 239.99970 * 2 1 3 28 28 H 1.09002 * 109.46759 * 119.99962 * 2 1 3 29 29 H 1.08999 * 109.47244 * 179.97438 * 5 3 2 30 30 H 1.09001 * 109.47323 * 299.99778 * 5 3 2 31 31 H 1.09001 * 109.47395 * 60.00295 * 5 3 2 32 32 H 1.08005 * 119.99672 * 359.97438 * 7 6 3 33 33 H 1.07996 * 120.00100 * 180.02562 * 8 7 6 34 34 H 0.97006 * 120.00021 * 179.97438 * 15 14 12 35 35 H 1.00909 * 110.99710 * 40.57463 * 20 10 9 36 36 H 1.08997 * 109.47125 * 64.91861 * 21 20 10 37 37 H 1.09005 * 109.46806 * 184.90957 * 21 20 10 38 38 H 1.08994 * 109.47083 * 304.91082 * 21 20 10 39 39 H 1.08000 * 120.00219 * 179.72968 * 22 9 8 40 40 H 1.08011 * 119.99603 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4442 -0.1238 7 6 4.1463 2.0735 -1.1960 8 6 5.5240 2.0755 -1.3094 9 6 6.2972 1.4478 -0.3507 10 6 7.7992 1.4496 -0.4745 11 1 8.1010 2.1802 -1.2250 12 6 8.2705 0.0795 -0.8891 13 1 7.5541 -0.7131 -1.0476 14 6 9.6162 -0.1619 -1.0672 15 7 10.4885 0.8033 -0.8748 16 14 10.2005 -1.8599 -1.5818 17 1 9.0302 -2.7618 -1.7315 18 1 10.9210 -1.7642 -2.8767 19 1 11.1147 -2.4039 -0.5457 20 7 8.3969 1.8020 0.8202 21 6 8.4368 3.2591 1.0024 22 6 5.6926 0.8136 0.7184 23 6 4.3152 0.8163 0.8346 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9989 3.1540 1.3076 30 1 0.5489 2.1252 1.3968 31 1 2.0698 1.5875 2.1491 32 1 3.5421 2.5635 -1.9452 33 1 5.9962 2.5675 -2.1468 34 1 11.4354 0.6334 -0.9998 35 1 7.9041 1.3559 1.5794 36 1 7.4195 3.6470 1.0528 37 1 8.9619 3.4952 1.9280 38 1 8.9588 3.7162 0.1618 39 1 6.2966 0.3195 1.4651 40 1 3.8429 0.3240 1.6720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259346900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:57 Heat of formation + Delta-G solvation = -9.540531 kcal Electronic energy + Delta-G solvation = -17930.926646 eV Core-core repulsion = 15322.947501 eV Total energy + Delta-G solvation = -2607.979145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62679 -37.95722 -36.05066 -34.06229 -32.01299 -31.71017 -30.09212 -28.37513 -25.88712 -25.31277 -23.89269 -23.49278 -21.62805 -20.53162 -18.55279 -17.59182 -16.54157 -16.28817 -16.05781 -15.55607 -15.36117 -14.84569 -14.80137 -14.39500 -14.11017 -13.91576 -13.71343 -13.58780 -13.26346 -12.87031 -12.85088 -12.70065 -12.57842 -12.43850 -12.37212 -11.91343 -11.83473 -11.53071 -11.39813 -11.21277 -11.13726 -10.51905 -9.70725 -9.24077 -8.68550 -7.95752 -6.16354 0.61237 0.62067 1.41997 1.44326 1.54902 2.47624 2.99613 3.25135 3.80313 3.90993 4.09301 4.19993 4.22876 4.25079 4.34379 4.54968 4.59441 4.62421 4.68328 4.72245 4.79394 4.80231 4.86433 5.04216 5.08344 5.13482 5.17473 5.18153 5.23353 5.33615 5.35381 5.45644 5.55446 5.68304 5.78726 5.82845 5.96068 6.19430 6.30458 6.64175 6.98077 7.15894 7.55077 9.07360 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.005582 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.445044 B = 5015.234705 C = 5609.312104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.043 4.043 4 H 0.082 0.918 5 C -0.141 4.141 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.138 4.138 9 C -0.098 4.098 10 C 0.258 3.742 11 H 0.005 0.995 12 C -0.534 4.534 13 H 0.043 0.957 14 C 0.037 3.963 15 N -0.882 5.882 16 Si 0.948 3.052 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.670 5.670 21 C 0.046 3.954 22 C -0.127 4.127 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.321 0.679 36 H 0.006 0.994 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.112 0.888 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.004 1.736 3.441 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.062 4.062 4 H 0.100 0.900 5 C -0.198 4.198 6 C -0.094 4.094 7 C -0.138 4.138 8 C -0.157 4.157 9 C -0.100 4.100 10 C 0.150 3.850 11 H 0.023 0.977 12 C -0.573 4.573 13 H 0.061 0.939 14 C -0.166 4.166 15 N -0.519 5.519 16 Si 0.774 3.226 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.206 1.206 20 N -0.299 5.299 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.130 0.870 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.143 1.768 3.213 17.531 hybrid contribution 0.217 -0.553 -0.318 0.673 sum -16.926 1.215 2.896 17.214 Atomic orbital electron populations 1.21804 0.94262 1.02061 1.02457 1.21570 0.96854 0.95213 1.01701 1.20138 0.89020 0.97244 0.99762 0.89980 1.21868 1.02031 0.99945 0.95964 1.20036 0.96451 0.98297 0.94654 1.21209 0.93666 1.00278 0.98608 1.21148 0.94607 1.01064 0.98891 1.21211 0.98484 0.95584 0.94756 1.18012 0.83834 0.95229 0.87931 0.97715 1.21169 0.92086 0.96305 1.47724 0.93864 1.25630 0.96992 0.99547 0.94433 1.70203 1.01321 1.33091 1.47248 0.85701 0.78136 0.81047 0.77755 1.19680 1.20676 1.20647 1.60806 1.58587 1.06642 1.03903 1.21985 0.97581 0.90244 1.00624 1.20973 0.95271 0.99890 0.98391 1.21074 0.92566 0.99865 0.99562 0.92402 0.91543 0.92388 0.93207 0.92047 0.93272 0.90482 0.92690 0.84543 0.87397 0.93605 0.86137 0.97578 0.91822 0.94376 0.87012 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 71.98 0.70 -1.49 16 2 C -0.12 -2.26 5.14 30.59 0.16 -2.10 16 3 C -0.04 -0.91 2.56 -11.54 -0.03 -0.94 16 4 H 0.08 1.58 7.88 -2.39 -0.02 1.56 16 5 C -0.14 -2.55 8.76 71.98 0.63 -1.92 16 6 C -0.09 -2.72 4.78 -19.87 -0.09 -2.81 16 7 C -0.12 -3.80 9.67 22.27 0.22 -3.58 16 8 C -0.14 -5.43 9.67 22.27 0.22 -5.21 16 9 C -0.10 -4.30 4.63 -19.86 -0.09 -4.39 16 10 C 0.26 13.31 2.08 43.43 0.09 13.40 16 11 H 0.00 0.28 7.55 -2.39 -0.02 0.26 16 12 C -0.53 -30.27 8.66 25.60 0.22 -30.05 16 13 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 14 C 0.04 2.11 5.39 84.65 0.46 2.57 16 15 N -0.88 -52.40 12.77 21.45 0.27 -52.13 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 N -0.67 -32.75 5.89 -522.49 -3.08 -35.83 16 21 C 0.05 1.94 10.52 127.69 1.34 3.29 16 22 C -0.13 -4.91 8.97 22.27 0.20 -4.71 16 23 C -0.11 -3.55 8.76 22.27 0.20 -3.35 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.84 6.56 -2.39 -0.02 0.83 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.22 7.57 -2.39 -0.02 1.20 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.07 6.56 -2.39 -0.02 1.06 16 31 H 0.05 1.01 7.39 -2.39 -0.02 0.99 16 32 H 0.14 3.51 7.95 -2.91 -0.02 3.49 16 33 H 0.11 4.22 7.99 -2.91 -0.02 4.20 16 34 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 35 H 0.32 14.57 6.80 -89.69 -0.61 13.96 16 36 H 0.01 0.23 8.03 -2.39 -0.02 0.21 16 37 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.04 1.72 7.94 -2.39 -0.02 1.70 16 39 H 0.11 4.37 6.89 -2.91 -0.02 4.35 16 40 H 0.13 3.50 7.16 -2.90 -0.02 3.48 16 Total: -1.00 -63.42 321.82 3.82 -59.60 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.39 Total: 22.87 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.20 Total: -41.30 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -2.81 Total: -87.95 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.42 3.82 -59.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.058 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds