Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 H 1.08999 * 109.47604 * 54.99963 * 3 2 1 5 5 C 1.53001 * 109.46906 * 294.99595 * 3 2 1 6 6 C 1.50700 * 109.47093 * 174.99991 * 3 2 1 7 7 C 1.38237 * 120.00085 * 239.99682 * 6 3 2 8 8 C 1.38227 * 120.00046 * 179.97438 * 7 6 3 9 9 C 1.38239 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99964 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.46993 * 274.82553 * 10 9 8 12 12 C 1.50696 * 109.47481 * 34.82967 * 10 9 8 13 13 H 1.07999 * 119.99943 * 0.02562 * 12 10 9 14 14 C 1.37880 * 119.99845 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00076 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99695 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47357 * 60.00235 * 16 14 12 18 18 H 1.48511 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47503 * 300.00068 * 16 14 12 20 20 N 1.46902 * 109.46854 * 154.83467 * 10 9 8 21 21 C 1.46900 * 110.99714 * 294.18822 * 20 10 9 22 22 C 1.38235 * 119.99724 * 0.26897 * 9 8 7 23 23 C 1.38238 * 120.00077 * 59.97269 * 6 3 2 24 24 H 1.08997 * 109.46823 * 300.00304 * 1 2 3 25 25 H 1.09000 * 109.46919 * 60.00452 * 1 2 3 26 26 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 239.99260 * 2 1 3 28 28 H 1.09000 * 109.46919 * 119.99548 * 2 1 3 29 29 H 1.08998 * 109.47210 * 59.99965 * 5 3 2 30 30 H 1.08999 * 109.47070 * 180.02562 * 5 3 2 31 31 H 1.09007 * 109.47335 * 300.00210 * 5 3 2 32 32 H 1.08004 * 119.99852 * 359.97438 * 7 6 3 33 33 H 1.08009 * 120.00027 * 179.97438 * 8 7 6 34 34 H 0.97006 * 120.00313 * 180.02562 * 15 14 12 35 35 H 1.00904 * 111.00031 * 170.23438 * 20 10 9 36 36 H 1.09003 * 109.46958 * 305.59409 * 21 20 10 37 37 H 1.08998 * 109.47066 * 65.59617 * 21 20 10 38 38 H 1.09007 * 109.46838 * 185.59794 * 21 20 10 39 39 H 1.08000 * 120.00029 * 179.72915 * 22 9 8 40 40 H 1.08001 * 120.00059 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.1463 2.0736 1.1960 8 6 5.5239 2.0747 1.3099 9 6 6.2972 1.4462 0.3519 10 6 7.7991 1.4470 0.4764 11 1 8.1990 2.3640 0.0435 12 6 8.1826 1.3696 1.9317 13 1 7.4155 1.3238 2.6905 14 6 9.5128 1.3560 2.2943 15 7 10.4468 1.4112 1.3701 16 14 9.9881 1.2593 4.0981 17 1 9.4429 0.0100 4.6874 18 1 11.4682 1.2603 4.2208 19 1 9.4313 2.4313 4.8204 20 7 8.3502 0.2876 -0.2377 21 6 7.9421 -0.9690 0.4046 22 6 5.6931 0.8212 -0.7230 23 6 4.3152 0.8161 -0.8345 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1251 -1.3971 30 1 1.9990 3.1539 -1.3076 31 1 2.0700 1.5873 -2.1493 32 1 3.5421 2.5643 1.9448 33 1 5.9961 2.5668 2.1474 34 1 11.3827 1.4013 1.6252 35 1 9.3551 0.3491 -0.3059 36 1 8.2181 -0.9445 1.4588 37 1 6.8626 -1.0892 0.3143 38 1 8.4430 -1.8055 -0.0828 39 1 6.2974 0.3338 -1.4738 40 1 3.8431 0.3245 -1.6722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259346903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = 1.573000 kcal Electronic energy + Delta-G solvation = -18076.206423 eV Core-core repulsion = 15468.709197 eV Total energy + Delta-G solvation = -2607.497226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11745 -36.57424 -34.70779 -31.84748 -30.69290 -30.07360 -28.76129 -26.52295 -24.63052 -24.12002 -22.25781 -21.73352 -20.00215 -19.13186 -16.39978 -15.89852 -15.07033 -14.89928 -14.47753 -14.20597 -13.79526 -13.72995 -13.23418 -12.83409 -12.68441 -12.42056 -12.29438 -11.98885 -11.81998 -11.63710 -11.55795 -10.97921 -10.87476 -10.83663 -10.69445 -10.58019 -10.36791 -10.18864 -10.07807 -9.57856 -9.48529 -8.62238 -8.08592 -7.56743 -7.03829 -6.08028 -4.22879 2.19148 2.22666 3.23616 3.28923 3.31823 4.31571 4.58718 4.89857 4.96901 5.13196 5.15394 5.42802 5.53395 5.59922 5.68078 5.69713 5.78567 5.92927 5.99345 6.03714 6.04581 6.09084 6.25237 6.30786 6.41483 6.48085 6.54946 6.59638 6.84153 6.88358 6.90814 7.22908 7.31448 7.33476 7.45409 7.66868 7.73308 7.87634 8.13054 8.62983 8.84523 9.05476 9.46923 10.89668 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.005346 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.583403 B = 5236.676319 C = 5508.273495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.046 4.046 4 H 0.069 0.931 5 C -0.143 4.143 6 C -0.106 4.106 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.041 4.041 10 C 0.234 3.766 11 H 0.052 0.948 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.691 5.691 21 C 0.041 3.959 22 C -0.108 4.108 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.265 0.735 35 H 0.355 0.645 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.127 0.873 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.937 -1.172 -3.163 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.064 4.064 4 H 0.088 0.912 5 C -0.200 4.200 6 C -0.106 4.106 7 C -0.148 4.148 8 C -0.129 4.129 9 C -0.041 4.041 10 C 0.126 3.874 11 H 0.070 0.930 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.323 5.323 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.145 0.855 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.230 -1.186 -3.671 14.744 hybrid contribution 0.983 -0.077 1.943 2.179 sum -13.248 -1.263 -1.728 13.419 Atomic orbital electron populations 1.21839 0.96287 1.01238 1.01642 1.21578 0.95073 0.96370 1.02290 1.20056 0.92085 0.96001 0.98255 0.91247 1.21878 1.00379 1.00606 0.97124 1.19573 0.94116 1.00655 0.96213 1.20913 0.94899 1.01195 0.97807 1.21171 0.92623 0.99823 0.99258 1.20498 0.97787 0.93608 0.92246 1.18106 0.85432 0.91336 0.92506 0.93019 1.21763 0.91964 1.51045 0.92807 0.92280 1.24999 0.96521 0.94473 0.97595 1.69729 1.00526 1.50422 1.32674 0.86626 0.77289 0.78735 0.85244 1.20276 1.21225 1.20150 1.60950 1.18107 1.01710 1.51550 1.21894 0.98770 0.92013 0.98329 1.21173 0.93474 0.99359 0.98643 1.20832 0.93989 1.01077 0.98705 0.92969 0.92628 0.93078 0.91923 0.91973 0.92844 0.92767 0.92603 0.87574 0.85826 0.92468 0.82485 0.94895 0.94052 0.95116 0.85524 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.35 5.14 -26.73 -0.14 -1.48 16 3 C -0.05 -0.58 2.56 -91.77 -0.24 -0.81 16 4 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 5 C -0.14 -1.62 8.76 37.16 0.33 -1.30 16 6 C -0.11 -1.70 4.78 -104.62 -0.50 -2.20 16 7 C -0.13 -2.28 9.67 -39.59 -0.38 -2.67 16 8 C -0.11 -2.26 8.85 -39.59 -0.35 -2.61 16 9 C -0.04 -0.89 4.89 -104.62 -0.51 -1.40 16 10 C 0.23 5.77 2.87 -70.02 -0.20 5.57 16 11 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 12 C -0.54 -14.05 6.23 -34.44 -0.21 -14.26 16 13 H 0.06 1.56 6.34 -52.49 -0.33 1.22 16 14 C 0.07 1.76 5.28 -17.82 -0.09 1.67 16 15 N -0.89 -24.32 11.63 55.43 0.64 -23.67 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 N -0.69 -16.32 5.64 -116.49 -0.66 -16.98 16 21 C 0.04 0.90 9.92 60.06 0.60 1.50 16 22 C -0.11 -2.13 7.92 -39.58 -0.31 -2.45 16 23 C -0.13 -2.18 8.76 -39.58 -0.35 -2.52 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 7.39 -51.92 -0.38 0.25 16 32 H 0.11 1.63 7.95 -52.48 -0.42 1.21 16 33 H 0.12 2.60 6.74 -52.48 -0.35 2.24 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.35 8.97 7.08 -39.29 -0.28 8.69 16 36 H 0.03 0.81 6.63 -51.93 -0.34 0.46 16 37 H 0.04 0.88 6.43 -51.93 -0.33 0.55 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 2.52 7.21 -52.49 -0.38 2.14 16 40 H 0.11 1.57 7.16 -52.49 -0.38 1.19 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -26.34 312.09 -8.69 -35.03 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.35 Total: 9.18 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -2.01 Total: -24.06 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.01 Total: -40.65 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.34 -8.69 -35.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.598 kcal (2) G-P(sol) polarization free energy of solvation -26.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds