Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 H 1.08999 * 109.47604 * 54.99963 * 3 2 1 5 5 C 1.53001 * 109.46906 * 294.99595 * 3 2 1 6 6 C 1.50700 * 109.47093 * 174.99991 * 3 2 1 7 7 C 1.38237 * 120.00085 * 239.99682 * 6 3 2 8 8 C 1.38227 * 120.00046 * 179.97438 * 7 6 3 9 9 C 1.38239 * 120.00389 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99964 * 180.02562 * 9 8 7 11 11 H 1.09006 * 109.46993 * 274.82553 * 10 9 8 12 12 C 1.50696 * 109.47481 * 34.82967 * 10 9 8 13 13 H 1.07999 * 119.99943 * 0.02562 * 12 10 9 14 14 C 1.37880 * 119.99845 * 179.97438 * 12 10 9 15 15 N 1.31509 * 120.00076 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99695 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47357 * 60.00235 * 16 14 12 18 18 H 1.48511 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47503 * 300.00068 * 16 14 12 20 20 N 1.46902 * 109.46854 * 154.83467 * 10 9 8 21 21 C 1.46900 * 110.99714 * 294.18822 * 20 10 9 22 22 C 1.38235 * 119.99724 * 0.26897 * 9 8 7 23 23 C 1.38238 * 120.00077 * 59.97269 * 6 3 2 24 24 H 1.08997 * 109.46823 * 300.00304 * 1 2 3 25 25 H 1.09000 * 109.46919 * 60.00452 * 1 2 3 26 26 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 239.99260 * 2 1 3 28 28 H 1.09000 * 109.46919 * 119.99548 * 2 1 3 29 29 H 1.08998 * 109.47210 * 59.99965 * 5 3 2 30 30 H 1.08999 * 109.47070 * 180.02562 * 5 3 2 31 31 H 1.09007 * 109.47335 * 300.00210 * 5 3 2 32 32 H 1.08004 * 119.99852 * 359.97438 * 7 6 3 33 33 H 1.08009 * 120.00027 * 179.97438 * 8 7 6 34 34 H 0.97006 * 120.00313 * 180.02562 * 15 14 12 35 35 H 1.00904 * 111.00031 * 170.23438 * 20 10 9 36 36 H 1.09003 * 109.46958 * 305.59409 * 21 20 10 37 37 H 1.08998 * 109.47066 * 65.59617 * 21 20 10 38 38 H 1.09007 * 109.46838 * 185.59794 * 21 20 10 39 39 H 1.08000 * 120.00029 * 179.72915 * 22 9 8 40 40 H 1.08001 * 120.00059 * 0.02562 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 3.5419 1.4442 0.1238 7 6 4.1463 2.0736 1.1960 8 6 5.5239 2.0747 1.3099 9 6 6.2972 1.4462 0.3519 10 6 7.7991 1.4470 0.4764 11 1 8.1990 2.3640 0.0435 12 6 8.1826 1.3696 1.9317 13 1 7.4155 1.3238 2.6905 14 6 9.5128 1.3560 2.2943 15 7 10.4468 1.4112 1.3701 16 14 9.9881 1.2593 4.0981 17 1 9.4429 0.0100 4.6874 18 1 11.4682 1.2603 4.2208 19 1 9.4313 2.4313 4.8204 20 7 8.3502 0.2876 -0.2377 21 6 7.9421 -0.9690 0.4046 22 6 5.6931 0.8212 -0.7230 23 6 4.3152 0.8161 -0.8345 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1251 -1.3971 30 1 1.9990 3.1539 -1.3076 31 1 2.0700 1.5873 -2.1493 32 1 3.5421 2.5643 1.9448 33 1 5.9961 2.5668 2.1474 34 1 11.3827 1.4013 1.6252 35 1 9.3551 0.3491 -0.3059 36 1 8.2181 -0.9445 1.4588 37 1 6.8626 -1.0892 0.3143 38 1 8.4430 -1.8055 -0.0828 39 1 6.2974 0.3338 -1.4738 40 1 3.8431 0.3245 -1.6722 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259346903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = -11.641856 kcal Electronic energy + Delta-G solvation = -18076.779462 eV Core-core repulsion = 15468.709197 eV Total energy + Delta-G solvation = -2608.070265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55563 -38.03620 -36.18176 -33.82486 -32.00567 -31.54293 -29.99290 -28.18530 -26.35287 -25.41614 -23.62479 -23.29654 -21.45526 -20.46394 -18.33571 -17.50265 -16.55092 -16.41406 -15.97984 -15.73879 -15.14791 -15.02316 -14.63765 -14.37583 -14.22239 -13.79506 -13.69599 -13.41456 -13.24095 -12.85980 -12.80610 -12.56644 -12.49670 -12.42370 -12.20168 -11.90611 -11.75307 -11.59599 -11.43198 -11.25180 -11.09456 -10.65850 -9.56986 -9.10779 -9.00194 -8.09490 -6.32298 0.71145 0.73507 1.36589 1.37433 1.44825 2.36406 3.03776 3.14155 3.86078 3.97286 4.08079 4.25480 4.35159 4.37574 4.52317 4.59967 4.66175 4.73482 4.78982 4.82571 4.89829 4.96176 5.04576 5.12330 5.20029 5.23448 5.25556 5.32223 5.34816 5.39650 5.49788 5.52284 5.59332 5.65103 5.80486 5.91391 6.02486 6.12378 6.39708 6.69589 6.83185 7.03912 7.40400 8.84922 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.005346 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.583403 B = 5236.676319 C = 5508.273495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.044 4.044 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.093 4.093 7 C -0.130 4.130 8 C -0.126 4.126 9 C -0.071 4.071 10 C 0.237 3.763 11 H 0.013 0.987 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.685 5.685 21 C 0.050 3.950 22 C -0.115 4.115 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.266 0.734 35 H 0.343 0.657 36 H 0.006 0.994 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.121 0.879 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 -1.730 -3.216 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.062 4.062 4 H 0.097 0.903 5 C -0.198 4.198 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.071 4.071 10 C 0.129 3.871 11 H 0.031 0.969 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.315 5.315 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.831 -1.744 -3.725 17.326 hybrid contribution 1.695 0.104 1.919 2.562 sum -15.136 -1.640 -1.806 15.331 Atomic orbital electron populations 1.21806 0.94359 1.02051 1.02388 1.21556 0.96753 0.95162 1.01726 1.20134 0.89217 0.97262 0.99607 0.90305 1.21868 1.01941 0.99946 0.96029 1.20014 0.96326 0.98256 0.94681 1.21171 0.93722 1.01045 0.98856 1.21128 0.94093 1.00431 0.98837 1.20298 0.96156 0.96392 0.94296 1.17916 0.87629 0.90074 0.91471 0.96917 1.21940 0.92012 1.50782 0.93597 0.92978 1.25668 0.96545 0.94321 1.01142 1.69832 1.00624 1.51067 1.34138 0.85722 0.77011 0.78624 0.80983 1.20141 1.20784 1.19777 1.60962 1.17060 1.02087 1.51408 1.21836 0.99436 0.92014 0.96729 1.21145 0.94820 0.99488 0.97857 1.21087 0.92795 1.00499 0.99564 0.92534 0.91565 0.92331 0.91895 0.93223 0.90545 0.93379 0.92583 0.85117 0.87480 0.92495 0.83864 0.97496 0.93257 0.92923 0.86142 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 71.98 0.70 -1.55 16 2 C -0.11 -2.28 5.14 30.59 0.16 -2.12 16 3 C -0.04 -0.96 2.56 -11.54 -0.03 -0.99 16 4 H 0.08 1.63 7.88 -2.39 -0.02 1.61 16 5 C -0.14 -2.68 8.76 71.98 0.63 -2.05 16 6 C -0.09 -2.78 4.78 -19.86 -0.09 -2.87 16 7 C -0.13 -4.39 9.67 22.27 0.22 -4.17 16 8 C -0.13 -5.25 8.85 22.27 0.20 -5.05 16 9 C -0.07 -3.17 4.89 -19.86 -0.10 -3.27 16 10 C 0.24 12.22 2.87 43.42 0.12 12.34 16 11 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 12 C -0.54 -29.47 6.23 25.60 0.16 -29.31 16 13 H 0.05 2.84 6.34 -2.91 -0.02 2.82 16 14 C 0.02 1.26 5.28 84.66 0.45 1.70 16 15 N -0.92 -51.17 11.63 21.45 0.25 -50.92 16 16 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 N -0.68 -33.30 5.64 -522.46 -2.95 -36.25 16 21 C 0.05 2.26 9.92 127.69 1.27 3.52 16 22 C -0.11 -4.50 7.92 22.27 0.18 -4.32 16 23 C -0.12 -3.89 8.76 22.27 0.20 -3.70 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.87 6.57 -2.39 -0.02 0.85 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 1.25 7.57 -2.39 -0.02 1.23 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.13 6.56 -2.39 -0.02 1.11 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.07 7.39 -2.38 -0.02 1.05 16 32 H 0.13 3.71 7.95 -2.91 -0.02 3.68 16 33 H 0.11 4.69 6.74 -2.91 -0.02 4.67 16 34 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 35 H 0.34 17.93 7.08 -89.69 -0.64 17.29 16 36 H 0.01 0.33 6.63 -2.39 -0.02 0.31 16 37 H 0.05 2.11 6.43 -2.39 -0.02 2.09 16 38 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.12 4.79 7.21 -2.91 -0.02 4.77 16 40 H 0.13 3.53 7.16 -2.91 -0.02 3.50 16 Total: -1.00 -57.62 312.09 3.75 -53.87 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.38 Total: 29.76 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 4.04 Total: -41.85 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.70 Total: -87.16 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.62 3.75 -53.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259346903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.225 kcal (2) G-P(sol) polarization free energy of solvation -57.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds