Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46909 * 110.99786 * 2 1 4 4 C 1.50706 * 109.47103 * 293.95389 * 3 2 1 5 5 H 1.08000 * 120.00091 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99795 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00311 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99751 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47104 * 59.99994 * 8 6 4 10 10 H 1.48497 * 109.47044 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47320 * 299.99934 * 8 6 4 12 12 C 1.39666 * 111.00193 * 123.95330 * 2 1 3 13 13 C 1.38934 * 120.07734 * 295.76829 * 12 2 1 14 14 C 1.38081 * 119.93098 * 180.27372 * 13 12 2 15 15 C 1.38310 * 120.06979 * 0.02562 * 14 13 12 16 16 C 1.38261 * 120.15468 * 359.97438 * 15 14 13 17 17 C 1.38127 * 120.07179 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.03842 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47118 * 0.02562 * 18 17 16 20 20 C 1.53001 * 109.47197 * 120.02000 * 18 17 16 21 21 C 1.52996 * 109.47403 * 240.02122 * 18 17 16 22 22 H 1.09002 * 109.47116 * 296.04573 * 1 2 3 23 23 H 1.09001 * 109.47605 * 56.04616 * 1 2 3 24 24 H 1.08999 * 109.46947 * 176.04332 * 1 2 3 25 25 H 1.08999 * 109.46903 * 53.95089 * 3 2 1 26 26 H 1.08997 * 109.47214 * 173.95501 * 3 2 1 27 27 H 0.96996 * 120.00219 * 180.02562 * 7 6 4 28 28 H 1.08007 * 120.03609 * 0.26030 * 13 12 2 29 29 H 1.07993 * 119.96602 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.92179 * 180.02562 * 15 14 13 31 31 H 1.07993 * 119.96827 * 179.97438 * 16 15 14 32 32 H 1.09001 * 109.47010 * 59.99845 * 19 18 17 33 33 H 1.09001 * 109.47159 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46690 * 300.00032 * 19 18 17 35 35 H 1.09002 * 109.47052 * 60.00211 * 20 18 17 36 36 H 1.09001 * 109.47316 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47159 * 300.00294 * 20 18 17 38 38 H 1.09002 * 109.47126 * 59.99527 * 21 18 17 39 39 H 1.09001 * 109.47244 * 180.02562 * 21 18 17 40 40 H 1.09002 * 109.47089 * 299.99938 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5116 -2.0485 6 6 2.0266 3.3496 -1.5285 7 7 2.7118 4.0020 -0.6150 8 14 1.5816 4.1873 -3.1377 9 1 0.1043 4.2237 -3.2848 10 1 2.1138 5.5737 -3.1377 11 1 2.1733 3.4305 -4.2700 12 6 1.9695 -0.7282 1.0816 13 6 1.7312 -0.2978 2.3809 14 6 2.2323 -1.0170 3.4478 15 6 2.9713 -2.1645 3.2240 16 6 3.2105 -2.5958 1.9323 17 6 2.7121 -1.8810 0.8606 18 6 2.9737 -2.3514 -0.5470 19 6 3.8078 -3.6336 -0.5095 20 6 1.6423 -2.6296 -1.2476 21 6 3.7367 -1.2689 -1.3131 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5610 1.9274 0.8309 26 1 3.0796 1.3446 0.1082 27 1 2.9857 4.9184 -0.7767 28 1 1.1546 0.5985 2.5562 29 1 2.0470 -0.6832 4.4579 30 1 3.3617 -2.7254 4.0602 31 1 3.7883 -3.4919 1.7611 32 1 3.2641 -4.4048 0.0362 33 1 3.9966 -3.9741 -1.5276 34 1 4.7563 -3.4355 -0.0103 35 1 1.0481 -1.7162 -1.2743 36 1 1.8315 -2.9703 -2.2655 37 1 1.0987 -3.4008 -0.7018 38 1 4.6852 -1.0707 -0.8139 39 1 3.9255 -1.6090 -2.3313 40 1 3.1425 -0.3555 -1.3398 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259385128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = 12.335302 kcal Electronic energy + Delta-G solvation = -18888.051830 eV Core-core repulsion = 16281.021292 eV Total energy + Delta-G solvation = -2607.030537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25812 -37.65879 -37.00393 -34.66796 -31.07117 -30.62959 -29.27355 -28.09101 -27.79898 -26.52786 -24.13028 -23.59906 -21.49187 -20.06122 -18.52869 -17.69873 -16.73184 -16.44231 -16.12029 -15.47500 -15.28077 -14.94394 -14.92092 -14.45877 -14.25134 -13.98768 -13.35478 -13.25397 -13.06355 -12.81720 -12.77994 -12.73743 -12.52734 -12.42059 -12.13164 -12.08431 -11.94418 -11.62985 -11.43195 -11.40118 -11.22007 -10.60569 -9.64725 -9.31979 -9.04863 -8.19547 -6.29821 0.49995 0.55632 1.41212 1.44151 1.51768 2.40152 2.90337 3.12964 3.30205 3.86295 4.02226 4.19787 4.32808 4.33722 4.39776 4.57470 4.59282 4.65847 4.74473 4.87580 4.93724 4.96170 5.05499 5.07743 5.09711 5.14536 5.22609 5.24943 5.29572 5.33278 5.45584 5.60577 5.65256 5.68421 5.71859 5.78916 5.95163 6.12295 6.15382 6.23295 6.85533 6.88131 7.39678 8.91243 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.007490 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.509633 B = 3737.448973 C = 4272.688343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.493 5.493 3 C 0.224 3.776 4 C -0.518 4.518 5 H 0.068 0.932 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.081 3.919 13 C -0.172 4.172 14 C -0.123 4.123 15 C -0.126 4.126 16 C -0.121 4.121 17 C -0.065 4.065 18 C -0.011 4.011 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.144 4.144 22 H 0.010 0.990 23 H 0.067 0.933 24 H 0.075 0.925 25 H -0.040 1.040 26 H -0.005 1.005 27 H 0.263 0.737 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -14.978 3.486 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.214 5.214 3 C 0.099 3.901 4 C -0.556 4.556 5 H 0.086 0.914 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.013 4.013 13 C -0.192 4.192 14 C -0.142 4.142 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.066 4.066 18 C -0.011 4.011 19 C -0.195 4.195 20 C -0.196 4.196 21 C -0.201 4.201 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.093 0.907 25 H -0.022 1.022 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.096 -15.022 3.064 15.332 hybrid contribution -0.389 1.739 0.216 1.795 sum -0.486 -13.283 3.280 13.691 Atomic orbital electron populations 1.22282 0.86795 1.01249 1.00076 1.59865 1.07749 1.14829 1.38961 1.19291 0.93056 0.82722 0.94983 1.21392 1.34787 0.97305 1.02135 0.91399 1.25890 0.95026 0.98111 1.00502 1.70094 1.39356 1.11830 1.36252 0.85469 0.78852 0.77121 0.79384 1.19150 1.21153 1.19261 1.19168 0.98134 0.94926 0.89096 1.21778 1.02574 1.00328 0.94528 1.21220 0.98498 0.95941 0.98534 1.21439 0.98758 0.96537 0.97674 1.21432 1.00119 1.00673 0.91688 1.20058 0.96483 0.93694 0.96404 1.19254 0.96334 0.95155 0.90380 1.21959 0.99315 0.95755 1.02433 1.21951 0.96357 1.02059 0.99273 1.21967 0.99041 1.00415 0.98718 0.97154 0.91420 0.90661 1.02218 0.98677 0.92806 0.88606 0.84629 0.82995 0.83002 0.91266 0.91774 0.92368 0.91461 0.92470 0.92998 0.95095 0.92644 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 8.26 127.69 1.05 2.73 16 2 N -0.49 -21.42 1.27 -724.41 -0.92 -22.33 16 3 C 0.22 12.07 3.32 85.56 0.28 12.36 16 4 C -0.52 -29.03 8.37 25.60 0.21 -28.82 16 5 H 0.07 3.68 7.12 -2.91 -0.02 3.66 16 6 C 0.00 0.16 5.46 84.65 0.46 0.62 16 7 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 8 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 C 0.08 3.18 4.31 38.22 0.16 3.35 16 13 C -0.17 -6.50 8.66 22.40 0.19 -6.31 16 14 C -0.12 -3.71 10.04 22.25 0.22 -3.48 16 15 C -0.13 -3.25 10.04 22.29 0.22 -3.02 16 16 C -0.12 -3.30 8.97 22.25 0.20 -3.10 16 17 C -0.07 -2.20 4.77 -19.73 -0.09 -2.29 16 18 C -0.01 -0.34 0.75 -52.93 -0.04 -0.38 16 19 C -0.14 -3.14 7.13 71.98 0.51 -2.63 16 20 C -0.14 -4.13 8.25 71.98 0.59 -3.54 16 21 C -0.14 -5.26 8.25 71.98 0.59 -4.67 16 22 H 0.01 0.40 7.35 -2.39 -0.02 0.38 16 23 H 0.07 2.78 6.76 -2.39 -0.02 2.76 16 24 H 0.07 2.53 7.31 -2.39 -0.02 2.51 16 25 H -0.04 -2.36 7.47 -2.39 -0.02 -2.38 16 26 H 0.00 -0.29 7.87 -2.39 -0.02 -0.31 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.10 3.91 7.14 -2.91 -0.02 3.89 16 29 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.15 3.19 5.89 -2.91 -0.02 3.17 16 32 H 0.07 1.35 7.52 -2.39 -0.02 1.33 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.27 7.51 -2.39 -0.02 1.25 16 35 H 0.07 2.32 4.35 -2.39 -0.01 2.31 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 3.06 4.89 -2.39 -0.01 3.04 16 Total: -1.00 -63.95 308.32 6.98 -56.97 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.00 Total: 14.78 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.59 Total: -39.19 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -0.63 Total: -78.88 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.95 6.98 -56.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259385128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.304 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds