Wall clock time and date at job start Mon Mar 30 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46841 * 2 1 4 4 H 1.09001 * 109.47738 * 305.00384 * 3 2 1 5 5 C 1.53000 * 109.46948 * 65.00185 * 3 2 1 6 6 C 1.50702 * 109.47290 * 184.99929 * 3 2 1 7 7 C 1.38234 * 119.99895 * 299.73154 * 6 3 2 8 8 C 1.38240 * 120.00061 * 180.34228 * 7 6 3 9 9 C 1.38234 * 119.99667 * 359.88520 * 8 7 6 10 10 C 1.50702 * 119.99485 * 180.10960 * 9 8 7 11 11 H 1.09003 * 109.46519 * 159.97562 * 10 9 8 12 12 N 1.46901 * 109.47175 * 39.98167 * 10 9 8 13 13 C 1.52993 * 109.47442 * 279.97488 * 10 9 8 14 14 C 1.50699 * 109.47311 * 185.00199 * 13 10 9 15 15 H 1.07996 * 119.99974 * 0.02562 * 14 13 10 16 16 C 1.37886 * 120.00057 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99706 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99928 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47146 * 89.99938 * 18 16 14 20 20 H 1.48502 * 109.47057 * 210.00109 * 18 16 14 21 21 H 1.48503 * 109.47245 * 329.99884 * 18 16 14 22 22 C 1.38234 * 120.00244 * 0.09088 * 9 8 7 23 23 C 1.38230 * 119.99880 * 359.97438 * 22 9 8 24 24 H 1.08995 * 109.46853 * 299.99469 * 1 2 3 25 25 H 1.08997 * 109.46769 * 59.99970 * 1 2 3 26 26 H 1.08998 * 109.46733 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47462 * 240.00749 * 2 1 3 28 28 H 1.08997 * 109.47512 * 120.00059 * 2 1 3 29 29 H 1.09001 * 109.47192 * 59.99869 * 5 3 2 30 30 H 1.08999 * 109.47513 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47175 * 299.99899 * 5 3 2 32 32 H 1.08001 * 120.00279 * 0.27436 * 7 6 3 33 33 H 1.07996 * 119.99812 * 180.02562 * 8 7 6 34 34 H 1.00901 * 110.99891 * 299.99536 * 12 10 9 35 35 H 1.00897 * 111.00189 * 63.94709 * 12 10 9 36 36 H 1.08999 * 109.47670 * 305.00384 * 13 10 9 37 37 H 1.09010 * 109.47007 * 65.00474 * 13 10 9 38 38 H 0.97004 * 119.99313 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99769 * 180.02562 * 22 9 8 40 40 H 1.08000 * 120.00376 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4445 -0.1238 7 6 4.3155 0.8217 0.8378 8 6 5.6935 0.8295 0.7279 9 6 6.2977 1.4581 -0.3447 10 6 7.7999 1.4645 -0.4657 11 1 8.0802 1.6706 -1.4987 12 7 8.3288 0.1533 -0.0672 13 6 8.3804 2.5473 0.4461 14 6 9.8697 2.6370 0.2342 15 1 10.3537 1.9871 -0.4797 16 6 10.6145 3.5489 0.9518 17 7 11.9141 3.6275 0.7665 18 14 9.7774 4.6726 2.1872 19 1 9.7565 4.0158 3.5189 20 1 10.5250 5.9525 2.2780 21 1 8.3852 4.9428 1.7466 22 6 5.5241 2.0805 -1.3066 23 6 4.1463 2.0738 -1.1960 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0699 1.5875 2.1492 30 1 1.9988 3.1541 1.3077 31 1 0.5490 2.1252 1.3970 32 1 3.8433 0.3299 1.6754 33 1 6.2978 0.3426 1.4790 34 1 8.0821 -0.0612 0.8874 35 1 8.0110 -0.5706 -0.6941 36 1 7.9212 3.5069 0.2087 37 1 8.1760 2.2941 1.4865 38 1 12.4380 4.2688 1.2717 39 1 5.9963 2.5712 -2.1448 40 1 3.5418 2.5596 -1.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259448028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:41 Heat of formation + Delta-G solvation = -3.578976 kcal Electronic energy + Delta-G solvation = -17612.697889 eV Core-core repulsion = 15004.977257 eV Total energy + Delta-G solvation = -2607.720632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67113 -36.92777 -34.73190 -32.34261 -30.82329 -30.55298 -28.89083 -28.47486 -25.22440 -23.70512 -22.71955 -21.74301 -19.96293 -19.45375 -16.95062 -16.19772 -15.63937 -15.12526 -14.91137 -14.48540 -14.18312 -14.05564 -13.56425 -13.33713 -13.12919 -12.87471 -12.55085 -12.28971 -12.15409 -11.94706 -11.79644 -11.51136 -11.19337 -10.96860 -10.87077 -10.69997 -10.51118 -10.20399 -10.02747 -9.72608 -9.09427 -8.70113 -8.44107 -8.23380 -7.90990 -5.91932 -3.86772 1.57898 1.62670 3.35885 3.43329 3.47063 3.96789 4.53810 4.56252 4.65363 4.86887 5.07213 5.18894 5.22181 5.24304 5.30493 5.32346 5.36043 5.43581 5.48036 5.66430 5.70921 5.74587 5.79844 5.83758 5.90715 6.05373 6.13870 6.15760 6.25997 6.32330 6.59200 6.65889 6.77905 6.91116 7.14517 7.24292 7.35326 7.82196 7.97381 8.13987 8.70278 9.20671 9.70555 11.21917 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004742 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.427443 B = 5903.605330 C = 6269.006354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.049 4.049 4 H 0.074 0.926 5 C -0.145 4.145 6 C -0.093 4.093 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.104 4.104 10 C 0.141 3.859 11 H 0.082 0.918 12 N -0.819 5.819 13 C 0.001 3.999 14 C -0.494 4.494 15 H 0.080 0.920 16 C 0.062 3.938 17 N -0.907 5.907 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.268 1.268 22 C -0.113 4.113 23 C -0.117 4.117 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.332 0.668 35 H 0.324 0.676 36 H 0.019 0.981 37 H 0.010 0.990 38 H 0.260 0.740 39 H 0.121 0.879 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.422 -6.084 -1.232 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.067 4.067 4 H 0.092 0.908 5 C -0.202 4.202 6 C -0.093 4.093 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.107 4.107 10 C 0.029 3.971 11 H 0.100 0.900 12 N -0.346 5.346 13 C -0.036 4.036 14 C -0.532 4.532 15 H 0.098 0.902 16 C -0.137 4.137 17 N -0.547 5.547 18 Si 0.701 3.299 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.193 1.193 22 C -0.132 4.132 23 C -0.136 4.136 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.037 0.963 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.512 -5.667 -1.299 22.284 hybrid contribution -1.314 0.471 0.911 1.667 sum -22.826 -5.196 -0.388 23.413 Atomic orbital electron populations 1.21837 0.95933 1.01481 1.01842 1.21583 0.95497 0.95964 1.02267 1.20123 0.91359 0.96444 0.98794 0.90798 1.21895 1.00861 1.00713 0.96771 1.19723 0.94781 0.99302 0.95524 1.20855 0.93519 1.00136 0.98609 1.20960 0.94435 1.00479 0.97918 1.21409 0.99275 0.95975 0.94005 1.20562 0.84214 0.91188 1.01147 0.89985 1.58814 1.66405 1.02924 1.06417 1.19608 0.97532 0.92616 0.93894 1.21052 0.89818 1.19010 1.23370 0.90160 1.25005 0.94708 0.97125 0.96901 1.69913 1.05430 1.36952 1.42373 0.86897 0.80047 0.80679 0.82325 1.20509 1.21516 1.19279 1.21087 0.93374 0.99482 0.99266 1.20994 0.94727 1.00016 0.97819 0.92484 0.92828 0.92880 0.91939 0.91869 0.92518 0.92575 0.92414 0.86746 0.86440 0.85407 0.86447 0.96322 0.97172 0.92990 0.86077 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -1.02 5.15 -26.73 -0.14 -1.16 16 3 C -0.05 -0.49 2.56 -91.77 -0.24 -0.72 16 4 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 5 C -0.15 -1.36 8.76 37.16 0.33 -1.03 16 6 C -0.09 -1.18 4.78 -104.62 -0.50 -1.68 16 7 C -0.11 -1.52 8.76 -39.58 -0.35 -1.86 16 8 C -0.12 -1.84 9.30 -39.58 -0.37 -2.20 16 9 C -0.10 -1.76 4.94 -104.62 -0.52 -2.28 16 10 C 0.14 2.78 2.93 -68.87 -0.20 2.58 16 11 H 0.08 1.68 8.00 -51.93 -0.42 1.26 16 12 N -0.82 -15.11 8.77 -5.65 -0.05 -15.16 16 13 C 0.00 0.03 3.67 -27.89 -0.10 -0.08 16 14 C -0.49 -14.27 9.39 -34.44 -0.32 -14.59 16 15 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 18 Si 0.87 22.26 27.47 -169.99 -4.67 17.60 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 22 C -0.11 -1.76 9.67 -39.59 -0.38 -2.14 16 23 C -0.12 -1.59 9.67 -39.59 -0.38 -1.97 16 24 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 7.58 -51.93 -0.39 0.17 16 29 H 0.06 0.54 7.38 -51.93 -0.38 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.11 1.31 7.16 -52.49 -0.38 0.94 16 33 H 0.12 1.72 6.66 -52.49 -0.35 1.37 16 34 H 0.33 5.75 7.35 -39.29 -0.29 5.46 16 35 H 0.32 5.09 9.06 -39.29 -0.36 4.73 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 37 H 0.01 0.24 7.57 -51.92 -0.39 -0.15 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.12 1.76 8.04 -52.49 -0.42 1.34 16 40 H 0.12 1.30 7.95 -52.49 -0.42 0.88 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -31.58 319.49 -8.58 -40.16 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.54 Total: 6.58 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.91 Total: -26.15 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.72 Total: -42.99 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.58 -8.58 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259448028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.582 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds