Wall clock time and date at job start Mon Mar 30 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46841 * 2 1 4 4 H 1.09001 * 109.47738 * 305.00384 * 3 2 1 5 5 C 1.53000 * 109.46948 * 65.00185 * 3 2 1 6 6 C 1.50702 * 109.47290 * 184.99929 * 3 2 1 7 7 C 1.38234 * 119.99895 * 299.73154 * 6 3 2 8 8 C 1.38240 * 120.00061 * 180.34228 * 7 6 3 9 9 C 1.38234 * 119.99667 * 359.88520 * 8 7 6 10 10 C 1.50702 * 119.99485 * 180.10960 * 9 8 7 11 11 H 1.09003 * 109.46519 * 159.97562 * 10 9 8 12 12 N 1.46901 * 109.47175 * 39.98167 * 10 9 8 13 13 C 1.52993 * 109.47442 * 279.97488 * 10 9 8 14 14 C 1.50699 * 109.47311 * 185.00199 * 13 10 9 15 15 H 1.07996 * 119.99974 * 0.02562 * 14 13 10 16 16 C 1.37886 * 120.00057 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99706 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99928 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47146 * 89.99938 * 18 16 14 20 20 H 1.48502 * 109.47057 * 210.00109 * 18 16 14 21 21 H 1.48503 * 109.47245 * 329.99884 * 18 16 14 22 22 C 1.38234 * 120.00244 * 0.09088 * 9 8 7 23 23 C 1.38230 * 119.99880 * 359.97438 * 22 9 8 24 24 H 1.08995 * 109.46853 * 299.99469 * 1 2 3 25 25 H 1.08997 * 109.46769 * 59.99970 * 1 2 3 26 26 H 1.08998 * 109.46733 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47462 * 240.00749 * 2 1 3 28 28 H 1.08997 * 109.47512 * 120.00059 * 2 1 3 29 29 H 1.09001 * 109.47192 * 59.99869 * 5 3 2 30 30 H 1.08999 * 109.47513 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47175 * 299.99899 * 5 3 2 32 32 H 1.08001 * 120.00279 * 0.27436 * 7 6 3 33 33 H 1.07996 * 119.99812 * 180.02562 * 8 7 6 34 34 H 1.00901 * 110.99891 * 299.99536 * 12 10 9 35 35 H 1.00897 * 111.00189 * 63.94709 * 12 10 9 36 36 H 1.08999 * 109.47670 * 305.00384 * 13 10 9 37 37 H 1.09010 * 109.47007 * 65.00474 * 13 10 9 38 38 H 0.97004 * 119.99313 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99769 * 180.02562 * 22 9 8 40 40 H 1.08000 * 120.00376 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4445 -0.1238 7 6 4.3155 0.8217 0.8378 8 6 5.6935 0.8295 0.7279 9 6 6.2977 1.4581 -0.3447 10 6 7.7999 1.4645 -0.4657 11 1 8.0802 1.6706 -1.4987 12 7 8.3288 0.1533 -0.0672 13 6 8.3804 2.5473 0.4461 14 6 9.8697 2.6370 0.2342 15 1 10.3537 1.9871 -0.4797 16 6 10.6145 3.5489 0.9518 17 7 11.9141 3.6275 0.7665 18 14 9.7774 4.6726 2.1872 19 1 9.7565 4.0158 3.5189 20 1 10.5250 5.9525 2.2780 21 1 8.3852 4.9428 1.7466 22 6 5.5241 2.0805 -1.3066 23 6 4.1463 2.0738 -1.1960 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0699 1.5875 2.1492 30 1 1.9988 3.1541 1.3077 31 1 0.5490 2.1252 1.3970 32 1 3.8433 0.3299 1.6754 33 1 6.2978 0.3426 1.4790 34 1 8.0821 -0.0612 0.8874 35 1 8.0110 -0.5706 -0.6941 36 1 7.9212 3.5069 0.2087 37 1 8.1760 2.2941 1.4865 38 1 12.4380 4.2688 1.2717 39 1 5.9963 2.5712 -2.1448 40 1 3.5418 2.5596 -1.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259448028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:40 Heat of formation + Delta-G solvation = -22.562994 kcal Electronic energy + Delta-G solvation = -17613.521098 eV Core-core repulsion = 15004.977257 eV Total energy + Delta-G solvation = -2608.543841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77768 -38.05499 -36.02051 -34.45487 -31.89074 -31.53815 -30.75096 -29.49010 -26.42335 -25.03180 -23.79210 -23.13479 -21.23654 -20.57459 -18.96920 -17.48784 -16.97155 -16.36927 -16.13985 -15.90680 -15.45369 -15.08621 -14.91666 -14.55596 -14.35658 -14.21003 -13.82147 -13.58277 -13.30567 -13.11956 -12.90821 -12.75030 -12.53630 -12.23275 -11.93231 -11.89403 -11.78529 -11.60568 -11.43224 -11.33427 -11.27479 -10.72419 -9.81470 -9.54970 -9.24754 -8.21754 -6.21926 0.44387 0.51654 1.34181 1.35938 1.47348 2.38391 2.84591 3.11767 3.72012 3.83094 3.90146 4.00727 4.10156 4.16953 4.20012 4.45328 4.50667 4.56612 4.60845 4.67468 4.76489 4.78689 4.83854 5.03873 5.12125 5.12501 5.16008 5.17255 5.21143 5.25140 5.39726 5.43528 5.49632 5.57819 5.69282 5.75847 5.77917 6.14361 6.34755 6.50509 6.78211 6.87087 7.39275 8.95614 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035017 B = 0.004742 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.427443 B = 5903.605330 C = 6269.006354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.047 4.047 4 H 0.083 0.917 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.113 4.113 8 C -0.127 4.127 9 C -0.125 4.125 10 C 0.151 3.849 11 H 0.065 0.935 12 N -0.833 5.833 13 C 0.007 3.993 14 C -0.498 4.498 15 H 0.038 0.962 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.945 3.055 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.254 1.254 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.340 0.660 35 H 0.340 0.660 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.805 -5.961 -0.241 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.065 4.065 4 H 0.101 0.899 5 C -0.201 4.201 6 C -0.086 4.086 7 C -0.131 4.131 8 C -0.145 4.145 9 C -0.127 4.127 10 C 0.039 3.961 11 H 0.083 0.917 12 N -0.362 5.362 13 C -0.030 4.030 14 C -0.536 4.536 15 H 0.056 0.944 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.769 3.231 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.178 1.178 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.918 -5.564 -0.319 25.533 hybrid contribution -0.281 0.356 0.527 0.696 sum -25.199 -5.208 0.208 25.732 Atomic orbital electron populations 1.21817 0.94601 1.02081 1.02348 1.21555 0.96636 0.94950 1.01954 1.20183 0.89257 0.97467 0.99606 0.89904 1.21894 1.02082 0.99965 0.96203 1.20113 0.96465 0.97508 0.94500 1.21100 0.92728 0.99898 0.99397 1.21062 0.95515 1.00457 0.97512 1.21048 0.97190 0.98577 0.95872 1.20156 0.86517 0.90441 0.98984 0.91681 1.58717 1.67080 1.03065 1.07351 1.19485 0.94388 0.94158 0.95013 1.21296 0.92403 1.17883 1.22048 0.94414 1.25939 0.95285 0.99059 0.99294 1.70075 1.07292 1.38301 1.44057 0.85746 0.79397 0.78345 0.79623 1.19386 1.21032 1.17752 1.21215 0.94459 0.99602 0.99167 1.21270 0.94006 0.99872 0.98643 0.91854 0.92441 0.92315 0.92621 0.91881 0.92606 0.93477 0.90611 0.84597 0.86177 0.84635 0.84672 0.96653 0.96877 0.92816 0.86063 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 71.98 0.70 -1.01 16 2 C -0.11 -1.66 5.15 30.60 0.16 -1.50 16 3 C -0.05 -0.78 2.56 -11.54 -0.03 -0.81 16 4 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 5 C -0.14 -2.22 8.76 71.98 0.63 -1.59 16 6 C -0.09 -1.94 4.78 -19.87 -0.09 -2.04 16 7 C -0.11 -2.76 8.76 22.27 0.20 -2.56 16 8 C -0.13 -3.71 9.30 22.27 0.21 -3.51 16 9 C -0.12 -4.14 4.94 -19.87 -0.10 -4.23 16 10 C 0.15 6.05 2.93 44.17 0.13 6.18 16 11 H 0.06 2.77 8.00 -2.39 -0.02 2.75 16 12 N -0.83 -31.12 8.77 -171.80 -1.51 -32.62 16 13 C 0.01 0.35 3.67 29.85 0.11 0.46 16 14 C -0.50 -29.59 9.39 25.60 0.24 -29.35 16 15 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 16 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 17 N -0.96 -61.92 13.96 21.45 0.30 -61.62 16 18 Si 0.94 46.08 27.47 68.60 1.88 47.96 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 22 C -0.13 -3.77 9.67 22.27 0.22 -3.56 16 23 C -0.12 -2.97 9.67 22.27 0.22 -2.75 16 24 H 0.06 0.64 6.56 -2.39 -0.02 0.63 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.93 7.58 -2.39 -0.02 0.91 16 29 H 0.05 0.87 7.38 -2.39 -0.02 0.85 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.90 6.56 -2.39 -0.02 0.89 16 32 H 0.14 2.68 7.16 -2.91 -0.02 2.66 16 33 H 0.12 3.36 6.66 -2.91 -0.02 3.34 16 34 H 0.34 11.70 7.35 -89.69 -0.66 11.04 16 35 H 0.34 10.72 9.06 -89.70 -0.81 9.91 16 36 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 37 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 38 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.12 3.51 8.04 -2.91 -0.02 3.49 16 40 H 0.14 2.72 7.95 -2.91 -0.02 2.69 16 Total: -1.00 -68.91 319.49 3.21 -65.70 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.51 Total: 26.41 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.04 Total: -45.83 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.21 Total: -94.25 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Total: -68.91 3.21 -65.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259448028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.138 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds