Wall clock time and date at job start Mon Mar 30 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47653 * 2 1 4 4 H 1.09004 * 109.47158 * 54.99242 * 3 2 1 5 5 C 1.53010 * 109.46726 * 295.00025 * 3 2 1 6 6 C 1.50697 * 109.47498 * 174.99785 * 3 2 1 7 7 C 1.38227 * 120.00055 * 239.99743 * 6 3 2 8 8 C 1.38238 * 120.00074 * 179.97438 * 7 6 3 9 9 C 1.38228 * 119.99960 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00066 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47087 * 20.00351 * 10 9 8 12 12 N 1.46905 * 109.47121 * 140.00155 * 10 9 8 13 13 C 1.52998 * 109.47064 * 260.00073 * 10 9 8 14 14 C 1.50708 * 109.47046 * 174.99898 * 13 10 9 15 15 H 1.07997 * 120.00065 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99780 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47311 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47405 * 119.99673 * 18 16 14 21 21 H 1.48510 * 109.46631 * 239.99777 * 18 16 14 22 22 C 1.38240 * 119.99972 * 0.28185 * 9 8 7 23 23 C 1.38232 * 120.00021 * 359.50770 * 22 9 8 24 24 H 1.08993 * 109.47210 * 300.00522 * 1 2 3 25 25 H 1.09003 * 109.47126 * 59.99948 * 1 2 3 26 26 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47350 * 239.99630 * 2 1 3 28 28 H 1.09003 * 109.47126 * 120.00052 * 2 1 3 29 29 H 1.09004 * 109.46663 * 299.99520 * 5 3 2 30 30 H 1.09002 * 109.47398 * 59.99866 * 5 3 2 31 31 H 1.09004 * 109.47080 * 179.97438 * 5 3 2 32 32 H 1.08010 * 120.00298 * 359.97438 * 7 6 3 33 33 H 1.08000 * 120.00126 * 180.02562 * 8 7 6 34 34 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 35 35 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 36 36 H 1.08995 * 109.47368 * 294.99520 * 13 10 9 37 37 H 1.09001 * 109.47446 * 54.99927 * 13 10 9 38 38 H 0.96993 * 120.00255 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.00092 * 179.72980 * 22 9 8 40 40 H 1.07990 * 120.00253 * 180.27457 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3075 6 6 3.5419 1.4442 0.1239 7 6 4.1463 2.0735 1.1960 8 6 5.5239 2.0746 1.3099 9 6 6.2972 1.4460 0.3520 10 6 7.7990 1.4468 0.4765 11 1 8.0779 1.6552 1.5094 12 7 8.3236 0.1321 0.0834 13 6 8.3860 2.5242 -0.4377 14 6 9.8752 2.6087 -0.2226 15 1 10.3551 1.9586 0.4940 16 6 10.6251 3.5159 -0.9408 17 7 10.0409 4.3071 -1.8138 18 14 12.4711 3.6201 -0.6747 19 1 12.8798 2.6295 0.3534 20 1 13.1724 3.3278 -1.9507 21 1 12.8285 4.9862 -0.2150 22 6 5.6930 0.8213 -0.7231 23 6 4.3152 0.8163 -0.8347 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0700 1.5873 -2.1492 30 1 0.5490 2.1252 -1.3971 31 1 1.9983 3.1543 -1.3073 32 1 3.5421 2.5643 1.9448 33 1 5.9961 2.5659 2.1478 34 1 8.0782 -0.0845 -0.8711 35 1 9.3223 0.0860 0.2193 36 1 8.1830 2.2684 -1.4776 37 1 7.9301 3.4864 -0.2045 38 1 10.5683 4.9455 -2.3188 39 1 6.2974 0.3339 -1.4738 40 1 3.8431 0.3245 -1.6721 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259448031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:43 Heat of formation + Delta-G solvation = -12.648775 kcal Electronic energy + Delta-G solvation = -17539.639680 eV Core-core repulsion = 14931.525752 eV Total energy + Delta-G solvation = -2608.113928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42767 -36.73495 -34.71454 -32.45184 -30.65135 -30.40796 -28.56004 -27.86450 -25.16654 -23.77518 -22.51510 -21.87849 -19.95655 -19.32000 -16.90120 -15.99619 -15.36467 -14.82811 -14.63670 -14.60345 -14.19685 -13.85172 -13.30420 -13.16052 -12.72132 -12.64649 -12.56493 -12.18551 -12.05088 -11.80572 -11.66140 -11.35911 -11.04192 -10.92111 -10.74632 -10.69277 -10.47975 -10.33314 -10.11167 -9.88232 -9.14708 -8.49608 -8.43506 -8.15463 -7.59547 -6.08201 -4.12828 1.83619 1.87581 3.25612 3.33740 3.37179 4.21382 4.39156 4.72640 4.81178 5.00953 5.24338 5.26662 5.35619 5.39876 5.42363 5.46220 5.49755 5.58757 5.75355 5.83140 5.88395 5.89755 5.97175 6.00826 6.09216 6.24373 6.29856 6.31396 6.46819 6.58833 6.76421 6.89158 6.99397 7.20587 7.45062 7.50420 7.60595 7.86244 8.07469 8.22413 8.34740 8.94308 9.52361 11.02429 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.046013 B = 0.004161 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.372688 B = 6727.270334 C = 6906.276252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.047 4.047 4 H 0.072 0.928 5 C -0.145 4.145 6 C -0.097 4.097 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.049 4.049 10 C 0.124 3.876 11 H 0.075 0.925 12 N -0.840 5.840 13 C 0.001 3.999 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.106 4.106 23 C -0.115 4.115 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.328 0.672 35 H 0.345 0.655 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 -6.558 2.699 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.066 4.066 4 H 0.091 0.909 5 C -0.202 4.202 6 C -0.097 4.097 7 C -0.137 4.137 8 C -0.136 4.136 9 C -0.049 4.049 10 C 0.012 3.988 11 H 0.093 0.907 12 N -0.368 5.368 13 C -0.037 4.037 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.239 -6.711 3.163 17.853 hybrid contribution 1.680 0.860 -0.704 2.015 sum -14.558 -5.851 2.459 15.881 Atomic orbital electron populations 1.21836 0.96090 1.01363 1.01770 1.21583 0.95314 0.96117 1.02313 1.20097 0.91556 0.96286 0.98641 0.90943 1.21898 1.00668 1.00761 0.96883 1.19655 0.94589 0.99757 0.95718 1.20897 0.94554 1.00359 0.97858 1.20981 0.93396 1.00055 0.99210 1.20136 0.96329 0.94894 0.93575 1.20553 0.87981 0.89921 1.00312 0.90734 1.59273 1.19290 1.29906 1.28353 1.19793 0.95585 0.93955 0.94403 1.21208 0.92491 1.20043 1.22597 0.92460 1.25025 0.98633 0.95527 0.95073 1.69982 1.35694 1.22243 1.25026 0.86533 0.85462 0.77975 0.78018 1.19641 1.21019 1.20984 1.20886 0.94114 0.99509 0.97929 1.20831 0.93598 1.00268 0.98627 0.92898 0.92529 0.92976 0.91852 0.91927 0.92505 0.92588 0.92565 0.86885 0.86421 0.86030 0.84137 0.96480 0.96241 0.92961 0.86539 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.12 -1.16 5.14 -26.74 -0.14 -1.29 16 3 C -0.05 -0.53 2.56 -91.77 -0.24 -0.76 16 4 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 5 C -0.14 -1.52 8.76 37.16 0.33 -1.19 16 6 C -0.10 -1.38 4.78 -104.63 -0.50 -1.88 16 7 C -0.12 -1.79 9.67 -39.59 -0.38 -2.17 16 8 C -0.12 -2.03 9.67 -39.58 -0.38 -2.42 16 9 C -0.05 -0.92 4.95 -104.62 -0.52 -1.44 16 10 C 0.12 2.58 2.99 -68.86 -0.21 2.37 16 11 H 0.07 1.59 8.00 -51.93 -0.42 1.18 16 12 N -0.84 -16.06 9.02 -5.65 -0.05 -16.11 16 13 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 14 C -0.53 -14.32 8.55 -34.44 -0.29 -14.61 16 15 H 0.06 1.51 7.14 -52.49 -0.38 1.13 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.11 -1.85 9.29 -39.58 -0.37 -2.21 16 23 C -0.12 -1.74 8.76 -39.58 -0.35 -2.09 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.64 7.57 -51.93 -0.39 0.25 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 30 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 1.43 7.95 -52.48 -0.42 1.01 16 33 H 0.12 1.91 8.04 -52.49 -0.42 1.48 16 34 H 0.33 5.99 7.35 -39.29 -0.29 5.70 16 35 H 0.35 6.70 7.90 -39.29 -0.31 6.39 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 1.96 6.67 -52.49 -0.35 1.61 16 40 H 0.11 1.47 7.16 -52.49 -0.38 1.09 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -29.38 321.38 -8.90 -38.28 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.49 Total: 9.59 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.91 Total: -27.12 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.69 Total: -41.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.38 -8.90 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259448031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.628 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds