Wall clock time and date at job start Mon Mar 30 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 H 1.08998 * 109.47505 * 304.99665 * 3 2 1 5 5 C 1.52998 * 109.47267 * 64.99847 * 3 2 1 6 6 C 1.50705 * 109.47242 * 184.99780 * 3 2 1 7 7 C 1.38234 * 120.00143 * 119.99575 * 6 3 2 8 8 C 1.38237 * 120.00077 * 179.97438 * 7 6 3 9 9 C 1.38236 * 119.99947 * 0.03022 * 8 7 6 10 10 C 1.50697 * 120.00023 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47188 * 19.99953 * 10 9 8 12 12 N 1.46905 * 109.47125 * 139.99731 * 10 9 8 13 13 C 1.53001 * 109.47213 * 259.99575 * 10 9 8 14 14 C 1.50698 * 109.47176 * 174.99984 * 13 10 9 15 15 H 1.07997 * 119.99944 * 359.97438 * 14 13 10 16 16 C 1.37872 * 120.00026 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00059 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00309 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46510 * 60.00020 * 18 16 14 20 20 H 1.48495 * 109.47276 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47189 * 300.00718 * 18 16 14 22 22 C 1.38237 * 119.99978 * 0.24711 * 9 8 7 23 23 C 1.38236 * 119.99882 * 299.98044 * 6 3 2 24 24 H 1.09007 * 109.46860 * 60.00213 * 1 2 3 25 25 H 1.08995 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47322 * 300.00399 * 1 2 3 27 27 H 1.08999 * 109.47322 * 239.99601 * 2 1 3 28 28 H 1.09007 * 109.46860 * 119.99787 * 2 1 3 29 29 H 1.08999 * 109.47421 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47067 * 299.99917 * 5 3 2 31 31 H 1.09002 * 109.47451 * 60.00103 * 5 3 2 32 32 H 1.07996 * 120.00010 * 359.97438 * 7 6 3 33 33 H 1.07991 * 119.99692 * 180.02562 * 8 7 6 34 34 H 1.00901 * 110.99869 * 296.04907 * 12 10 9 35 35 H 1.00896 * 110.99543 * 60.00030 * 12 10 9 36 36 H 1.08997 * 109.47039 * 295.00606 * 13 10 9 37 37 H 1.09001 * 109.46723 * 55.00082 * 13 10 9 38 38 H 0.97003 * 120.00786 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.00367 * 179.73037 * 22 9 8 40 40 H 1.08000 * 119.99893 * 359.97438 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1238 7 6 4.1464 2.0734 -1.1960 8 6 5.5241 2.0755 -1.3093 9 6 6.2974 1.4478 -0.3506 10 6 7.7993 1.4496 -0.4743 11 1 8.1081 2.2561 -1.1393 12 7 8.3996 1.6510 0.8513 13 6 8.2654 0.1096 -1.0470 14 6 9.7527 0.1554 -1.2856 15 1 10.3096 1.0508 -1.0526 16 6 10.4021 -0.9455 -1.8025 17 7 9.7237 -2.0354 -2.0876 18 14 12.2456 -0.8886 -2.0990 19 1 12.9455 -0.6289 -0.8153 20 1 12.6980 -2.1892 -2.6547 21 1 12.5587 0.1976 -3.0620 22 6 5.6927 0.8137 0.7186 23 6 4.3152 0.8169 0.8351 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.9990 3.1540 1.3075 30 1 0.5490 2.1253 1.3968 31 1 2.0698 1.5875 2.1492 32 1 3.5423 2.5633 -1.9452 33 1 5.9963 2.5673 -2.1467 34 1 8.1588 2.5575 1.2233 35 1 8.1281 0.9157 1.4866 36 1 8.0352 -0.6875 -0.3400 37 1 7.7519 -0.0811 -1.9893 38 1 10.1806 -2.8102 -2.4509 39 1 6.2966 0.3196 1.4653 40 1 3.8430 0.3260 1.6732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259448034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:46 Heat of formation + Delta-G solvation = -25.410634 kcal Electronic energy + Delta-G solvation = -17549.841509 eV Core-core repulsion = 14941.174185 eV Total energy + Delta-G solvation = -2608.667324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75538 -38.01646 -36.00913 -34.45260 -31.87673 -31.50800 -30.23161 -29.42134 -26.44464 -25.16875 -23.79295 -23.31850 -21.26426 -20.56289 -18.57338 -17.40193 -16.96061 -16.46202 -16.10077 -16.01523 -15.43268 -15.09105 -14.57462 -14.53486 -14.25183 -14.23965 -13.81169 -13.38399 -13.22943 -12.96191 -12.85919 -12.60895 -12.50618 -12.46207 -12.30178 -11.92796 -11.74332 -11.52042 -11.35175 -11.31073 -11.22106 -10.52470 -9.80684 -9.53614 -9.24188 -8.12716 -6.20009 0.46264 0.52278 1.41520 1.45083 1.52767 2.45948 2.86010 3.19836 3.73612 3.83686 3.92799 4.05712 4.11437 4.16727 4.19333 4.48547 4.50430 4.59718 4.62626 4.68055 4.76964 4.80788 4.93770 5.05798 5.12866 5.13986 5.17890 5.21679 5.25871 5.41297 5.43201 5.50277 5.57579 5.59380 5.76042 5.78926 5.86648 6.15223 6.28540 6.49566 6.80160 6.93953 7.46776 8.98890 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038754 B = 0.004299 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.339296 B = 6511.610327 C = 6807.084788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.046 4.046 4 H 0.084 0.916 5 C -0.141 4.141 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.123 4.123 10 C 0.145 3.855 11 H 0.068 0.932 12 N -0.828 5.828 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.060 0.940 16 C -0.006 4.006 17 N -0.940 5.940 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.268 1.268 22 C -0.128 4.128 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.340 0.660 35 H 0.337 0.663 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 8.191 6.128 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.198 4.198 6 C -0.087 4.087 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.126 4.126 10 C 0.033 3.967 11 H 0.086 0.914 12 N -0.357 5.357 13 C 0.010 3.990 14 C -0.548 4.548 15 H 0.079 0.921 16 C -0.202 4.202 17 N -0.581 5.581 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.147 4.147 23 C -0.132 4.132 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.468 7.955 5.697 20.022 hybrid contribution 0.294 -0.412 -0.092 0.514 sum -17.174 7.543 5.605 19.577 Atomic orbital electron populations 1.21804 0.94266 1.02049 1.02514 1.21583 0.96924 0.95341 1.01665 1.20174 0.89097 0.97145 0.99992 0.89800 1.21868 1.02085 1.00047 0.95799 1.20115 0.96526 0.97591 0.94500 1.21275 0.93980 1.00102 0.98470 1.21209 0.94550 1.00266 0.98579 1.21105 0.97739 0.97925 0.95794 1.20327 0.86166 0.98643 0.91523 0.91386 1.58754 1.66017 1.07011 1.03907 1.18905 0.95209 0.91251 0.93591 1.21487 0.94140 0.99209 1.40012 0.92130 1.25932 1.03177 0.95245 0.95837 1.70104 1.37674 1.04255 1.46084 0.85531 0.79846 0.77146 0.78646 1.19525 1.21113 1.19351 1.21033 0.95590 0.99661 0.98394 1.21085 0.92687 0.99748 0.99663 0.92347 0.92528 0.91446 0.93325 0.92053 0.92951 0.90589 0.92655 0.84252 0.86094 0.84744 0.84922 0.99277 0.99427 0.93128 0.86669 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 71.98 0.70 -1.36 16 2 C -0.12 -2.15 5.14 30.59 0.16 -1.99 16 3 C -0.05 -0.85 2.56 -11.54 -0.03 -0.88 16 4 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 5 C -0.14 -2.20 8.76 71.98 0.63 -1.56 16 6 C -0.09 -2.21 4.78 -19.86 -0.09 -2.31 16 7 C -0.12 -3.29 9.67 22.27 0.22 -3.08 16 8 C -0.13 -4.19 9.67 22.27 0.22 -3.98 16 9 C -0.12 -4.52 4.94 -19.87 -0.10 -4.61 16 10 C 0.15 6.16 2.93 44.17 0.13 6.29 16 11 H 0.07 2.94 8.00 -2.39 -0.02 2.92 16 12 N -0.83 -31.48 8.78 -171.80 -1.51 -32.99 16 13 C 0.05 2.59 4.60 29.85 0.14 2.73 16 14 C -0.51 -29.88 8.84 25.60 0.23 -29.65 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 17 N -0.94 -58.90 13.29 21.45 0.28 -58.62 16 18 Si 0.96 46.12 29.54 68.60 2.03 48.15 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.13 -4.24 9.29 22.27 0.21 -4.04 16 23 C -0.11 -3.14 8.76 22.27 0.20 -2.95 16 24 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.78 6.56 -2.39 -0.02 0.77 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.14 7.57 -2.38 -0.02 1.12 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.92 6.56 -2.39 -0.02 0.90 16 31 H 0.05 0.88 7.39 -2.39 -0.02 0.86 16 32 H 0.14 3.04 7.95 -2.91 -0.02 3.02 16 33 H 0.12 3.81 8.04 -2.92 -0.02 3.79 16 34 H 0.34 10.73 9.06 -89.69 -0.81 9.92 16 35 H 0.34 12.35 7.35 -89.70 -0.66 11.69 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.12 3.74 6.68 -2.91 -0.02 3.72 16 40 H 0.14 3.09 7.16 -2.91 -0.02 3.06 16 Total: -1.00 -67.10 323.11 3.40 -63.70 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.45 Total: 27.02 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 3.05 Total: -47.27 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.22 Total: -91.60 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -67.10 3.40 -63.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259448034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.289 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds