Wall clock time and date at job start Mon Mar 30 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46909 * 2 1 4 4 H 1.08996 * 109.47188 * 55.00140 * 3 2 1 5 5 C 1.53001 * 109.47210 * 295.00135 * 3 2 1 6 6 C 1.50701 * 109.46786 * 175.00144 * 3 2 1 7 7 C 1.38234 * 119.99792 * 240.00053 * 6 3 2 8 8 C 1.38233 * 119.99996 * 179.97438 * 7 6 3 9 9 C 1.38234 * 119.99926 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00090 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47014 * 340.00763 * 10 9 8 12 12 N 1.46894 * 109.47318 * 219.99904 * 10 9 8 13 13 C 1.53002 * 109.46676 * 99.99926 * 10 9 8 14 14 C 1.50706 * 109.47153 * 184.99784 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.38236 * 120.00077 * 0.27878 * 9 8 7 23 23 C 1.38234 * 119.99861 * 359.51096 * 22 9 8 24 24 H 1.09001 * 109.47470 * 299.99733 * 1 2 3 25 25 H 1.08994 * 109.47505 * 59.99952 * 1 2 3 26 26 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46954 * 240.00289 * 2 1 3 28 28 H 1.08994 * 109.47505 * 120.00048 * 2 1 3 29 29 H 1.08996 * 109.47049 * 300.00091 * 5 3 2 30 30 H 1.09003 * 109.47179 * 59.99788 * 5 3 2 31 31 H 1.09002 * 109.47248 * 180.02562 * 5 3 2 32 32 H 1.08000 * 119.99791 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00018 * 180.02562 * 8 7 6 34 34 H 1.00897 * 111.00410 * 300.00429 * 12 10 9 35 35 H 1.00904 * 110.99735 * 63.96143 * 12 10 9 36 36 H 1.09004 * 109.47178 * 65.00574 * 13 10 9 37 37 H 1.08993 * 109.47411 * 305.00257 * 13 10 9 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.07998 * 120.00380 * 179.72743 * 22 9 8 40 40 H 1.08005 * 120.00280 * 180.27216 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 6 4.1462 2.0736 1.1960 8 6 5.5238 2.0747 1.3099 9 6 6.2971 1.4462 0.3518 10 6 7.7990 1.4470 0.4763 11 1 8.1080 2.2535 1.1412 12 7 8.4000 1.6474 -0.8490 13 6 8.2638 0.1069 1.0497 14 6 9.7510 0.1516 1.2891 15 1 10.3088 1.0466 1.0559 16 6 10.3997 -0.9499 1.8057 17 7 9.7196 -2.0379 2.0946 18 14 12.2430 -0.8942 2.1030 19 1 12.9549 -1.3625 0.8868 20 1 12.6529 0.4996 2.4107 21 1 12.5867 -1.7753 3.2478 22 6 5.6930 0.8215 -0.7232 23 6 4.3152 0.8166 -0.8348 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0697 1.5876 -2.1491 30 1 0.5488 2.1252 -1.3969 31 1 1.9988 3.1542 -1.3075 32 1 3.5420 2.5642 1.9448 33 1 5.9960 2.5660 2.1478 34 1 8.1284 0.9121 -1.4843 35 1 8.1601 2.5540 -1.2215 36 1 8.0335 -0.6903 0.3429 37 1 7.7497 -0.0831 1.9918 38 1 8.7624 -2.0668 1.9405 39 1 6.2972 0.3342 -1.4740 40 1 3.8429 0.3247 -1.6723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259448037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:49 Heat of formation + Delta-G solvation = -29.837245 kcal Electronic energy + Delta-G solvation = -17589.409266 eV Core-core repulsion = 14980.549989 eV Total energy + Delta-G solvation = -2608.859276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84123 -38.13165 -36.18899 -34.63406 -31.95200 -31.55679 -30.03811 -29.36225 -26.31141 -25.15786 -23.87758 -23.49546 -21.46610 -20.62834 -18.93824 -17.59627 -17.00888 -16.27911 -16.14395 -15.65373 -15.50256 -15.23883 -14.96341 -14.60219 -14.34096 -14.16894 -13.95092 -13.60521 -13.13705 -12.99055 -12.91629 -12.68699 -12.53430 -12.36380 -12.14246 -11.92605 -11.82499 -11.57087 -11.51633 -11.35798 -10.74860 -10.51205 -9.88451 -9.61211 -9.32831 -8.61261 -6.28232 0.37976 0.44504 1.53414 1.63253 1.81207 2.60120 2.78111 3.21477 3.67611 3.77220 3.81540 3.95620 4.04534 4.09463 4.15458 4.37712 4.45303 4.51906 4.57044 4.62486 4.71454 4.74679 4.78985 5.00102 5.07408 5.08224 5.12815 5.13947 5.15414 5.21711 5.34844 5.38692 5.44768 5.53770 5.69191 5.70787 6.04206 6.08712 6.28135 6.35624 6.62874 6.73263 7.50464 8.78807 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.004313 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.759918 B = 6490.092338 C = 6782.120690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.046 4.046 4 H 0.084 0.916 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.127 4.127 10 C 0.152 3.848 11 H 0.066 0.934 12 N -0.827 5.827 13 C 0.032 3.968 14 C -0.585 4.585 15 H 0.052 0.948 16 C -0.047 4.047 17 N -0.945 5.945 18 Si 1.122 2.878 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.285 1.285 22 C -0.129 4.129 23 C -0.113 4.113 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.337 0.663 35 H 0.341 0.659 36 H -0.015 1.015 37 H -0.017 1.017 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.368 8.774 -6.434 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.064 4.064 4 H 0.103 0.897 5 C -0.198 4.198 6 C -0.085 4.085 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.129 4.129 10 C 0.040 3.960 11 H 0.084 0.916 12 N -0.357 5.357 13 C -0.006 4.006 14 C -0.623 4.623 15 H 0.070 0.930 16 C -0.242 4.242 17 N -0.584 5.584 18 Si 0.944 3.056 19 H -0.201 1.201 20 H -0.196 1.196 21 H -0.210 1.210 22 C -0.147 4.147 23 C -0.131 4.131 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.060 0.940 39 H 0.133 0.867 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.370 7.839 -5.525 18.973 hybrid contribution -2.032 0.601 -0.688 2.228 sum -18.403 8.440 -6.213 21.178 Atomic orbital electron populations 1.21804 0.94221 1.02081 1.02544 1.21583 0.96977 0.95283 1.01663 1.20186 0.88977 0.97212 1.00065 0.89727 1.21871 1.02155 1.00045 0.95753 1.20136 0.96617 0.97363 0.94407 1.21288 0.93893 1.00019 0.98493 1.21201 0.94623 1.00192 0.98585 1.21087 0.97555 0.98311 0.95950 1.20166 0.86259 0.97999 0.91549 0.91574 1.58720 1.66042 1.07081 1.03809 1.19078 0.95971 0.92340 0.93172 1.22329 0.94050 1.01783 1.44136 0.92989 1.27390 1.10899 0.92217 0.93705 1.70901 1.09062 1.30038 1.48430 0.82869 0.69418 0.76297 0.77059 1.20077 1.19551 1.21035 1.21025 0.95656 0.99820 0.98213 1.21098 0.92598 0.99662 0.99704 0.92321 0.91430 0.92505 0.92037 0.93321 0.92644 0.90518 0.92945 0.84117 0.86195 0.84919 0.84587 0.99687 0.99850 0.94002 0.86709 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.12 -2.09 5.14 30.59 0.16 -1.93 16 3 C -0.05 -0.84 2.56 -11.54 -0.03 -0.87 16 4 H 0.08 1.40 7.88 -2.39 -0.02 1.38 16 5 C -0.14 -2.15 8.76 71.98 0.63 -1.52 16 6 C -0.09 -2.12 4.78 -19.87 -0.09 -2.22 16 7 C -0.12 -3.22 9.67 22.27 0.22 -3.00 16 8 C -0.13 -4.18 9.67 22.27 0.22 -3.96 16 9 C -0.13 -4.63 4.95 -19.87 -0.10 -4.73 16 10 C 0.15 6.51 2.93 44.17 0.13 6.64 16 11 H 0.07 2.92 8.00 -2.39 -0.02 2.90 16 12 N -0.83 -31.83 8.77 -171.81 -1.51 -33.34 16 13 C 0.03 1.71 3.91 29.85 0.12 1.83 16 14 C -0.58 -34.66 8.84 25.60 0.23 -34.43 16 15 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 16 C -0.05 -2.80 5.46 84.65 0.46 -2.34 16 17 N -0.95 -60.92 13.65 21.45 0.29 -60.63 16 18 Si 1.12 52.83 29.90 68.60 2.05 54.88 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C -0.13 -4.21 9.30 22.27 0.21 -4.00 16 23 C -0.11 -3.06 8.76 22.27 0.20 -2.86 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 1.11 7.57 -2.39 -0.02 1.10 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 30 H 0.08 0.90 6.57 -2.39 -0.02 0.88 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.14 3.02 7.95 -2.91 -0.02 3.00 16 33 H 0.12 3.79 8.04 -2.91 -0.02 3.77 16 34 H 0.34 12.44 7.34 -89.70 -0.66 11.78 16 35 H 0.34 10.91 9.06 -89.69 -0.81 10.10 16 36 H -0.02 -0.87 8.01 -2.39 -0.02 -0.89 16 37 H -0.02 -0.98 8.00 -2.39 -0.02 -1.00 16 38 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16 39 H 0.11 3.68 6.65 -2.91 -0.02 3.66 16 40 H 0.14 3.05 7.16 -2.91 -0.02 3.03 16 Total: -1.00 -69.08 321.77 3.52 -65.57 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.35 Total: 28.23 kcal Atomic # 6 Polarization: -57.74 SS G_CDS: 3.03 Total: -54.71 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -1.21 Total: -93.97 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Total: -69.08 3.52 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259448037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.728 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds