Wall clock time and date at job start Mon Mar 30 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38235 * 119.99933 * 179.78838 * 6 5 4 8 8 C 1.38240 * 119.99615 * 0.44078 * 7 6 5 9 9 C 1.50703 * 119.99825 * 179.83444 * 8 7 6 10 10 H 1.08995 * 109.47327 * 199.97685 * 9 8 7 11 11 N 1.46901 * 109.46999 * 319.97974 * 9 8 7 12 12 C 1.52995 * 109.47165 * 79.97581 * 9 8 7 13 13 C 1.50705 * 109.47430 * 174.99845 * 12 9 8 14 14 H 1.08000 * 119.99463 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00485 * 180.02562 * 13 12 9 16 16 N 1.31523 * 119.99907 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47024 * 60.00231 * 17 15 13 19 19 H 1.48506 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47242 * 300.00376 * 17 15 13 21 21 C 1.38227 * 120.00231 * 359.81118 * 8 7 6 22 22 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 23 23 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 24 24 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 29 29 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.00360 * 180.27290 * 7 6 5 34 34 H 1.00904 * 111.00324 * 296.04275 * 11 9 8 35 35 H 1.00903 * 111.00359 * 60.00060 * 11 9 8 36 36 H 1.09001 * 109.47466 * 294.99891 * 12 9 8 37 37 H 1.09001 * 109.46963 * 55.00306 * 12 9 8 38 38 H 0.96997 * 120.00005 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.00166 * 179.97438 * 21 8 7 40 40 H 1.07996 * 120.00605 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4381 -2.5829 1.7324 7 6 0.0705 -3.9141 1.6731 8 6 0.9102 -4.8372 1.0784 9 6 0.5111 -6.2891 1.0172 10 1 1.3970 -6.9029 0.8543 11 7 -0.1264 -6.6756 2.2829 12 6 -0.4737 -6.4992 -0.1347 13 6 -0.7780 -7.9686 -0.2740 14 1 -0.3155 -8.6813 0.3928 15 6 -1.6467 -8.4031 -1.2525 16 7 -2.2095 -7.5352 -2.0648 17 14 -2.0244 -10.2244 -1.4246 18 1 -2.6251 -10.7267 -0.1628 19 1 -2.9802 -10.4282 -2.5427 20 1 -0.7687 -10.9660 -1.7045 21 6 2.1157 -4.4285 0.5396 22 6 2.4815 -3.0965 0.5951 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 -0.2161 -1.8623 2.2006 33 1 -0.8716 -4.2334 2.0938 34 1 0.5242 -6.6072 3.0512 35 1 -0.9509 -6.1205 2.4569 36 1 -1.3955 -5.9552 0.0715 37 1 -0.0334 -6.1300 -1.0610 38 1 -2.8203 -7.8409 -2.7534 39 1 2.7720 -5.1498 0.0754 40 1 3.4234 -2.7772 0.1740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259456208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:43 Heat of formation + Delta-G solvation = -9.204468 kcal Electronic energy + Delta-G solvation = -17580.891360 eV Core-core repulsion = 14972.926788 eV Total energy + Delta-G solvation = -2607.964572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48808 -36.77510 -34.81623 -32.41830 -30.73371 -30.41276 -28.24610 -27.21564 -26.41374 -23.79637 -22.42409 -21.45134 -20.09329 -19.44022 -16.56147 -15.91329 -15.52015 -15.00123 -14.68560 -14.48103 -14.33146 -14.23035 -13.49662 -13.09582 -13.03825 -12.44481 -12.42640 -12.22905 -11.96235 -11.88656 -11.48113 -11.08138 -11.02556 -10.83930 -10.73920 -10.64775 -10.56419 -10.46974 -10.13543 -9.53770 -9.06449 -8.58054 -8.26893 -8.08376 -7.84314 -5.88293 -3.87256 1.69363 1.73641 3.42002 3.45325 3.49275 4.07048 4.56968 4.75702 4.78780 4.90663 5.13639 5.27090 5.29541 5.38918 5.45538 5.45836 5.52908 5.55628 5.60051 5.74147 5.80452 5.84233 5.85030 6.00646 6.03180 6.17464 6.26964 6.28936 6.38528 6.45343 6.76445 6.81636 6.87610 7.06207 7.36490 7.58694 7.74394 8.02628 8.12658 8.22147 8.56295 9.18703 9.74541 11.23396 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033968 B = 0.004471 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.102794 B = 6261.194614 C = 6623.940534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.099 4.099 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.822 5.822 12 C 0.038 3.962 13 C -0.495 4.495 14 H 0.061 0.939 15 C 0.051 3.949 16 N -0.903 5.903 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.114 4.114 22 C -0.118 4.118 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.321 0.679 35 H 0.333 0.667 36 H 0.016 0.984 37 H 0.019 0.981 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 15.289 6.799 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.108 4.108 5 C -0.098 4.098 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.101 4.101 9 C 0.018 3.982 10 H 0.094 0.906 11 N -0.348 5.348 12 C 0.001 3.999 13 C -0.533 4.533 14 H 0.080 0.920 15 C -0.149 4.149 16 N -0.543 5.543 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.133 4.133 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.055 14.557 6.309 17.793 hybrid contribution -0.136 0.048 0.018 0.145 sum 7.920 14.605 6.327 17.778 Atomic orbital electron populations 1.21915 0.95068 1.02632 1.01203 1.21089 0.96292 0.95506 0.98180 1.21853 1.00734 0.96147 1.01639 1.20613 1.00591 0.91581 0.98051 1.19695 0.95198 0.94992 0.99892 1.20910 0.96169 0.95605 1.00538 1.20944 0.99279 0.92959 1.00492 1.21370 0.93733 0.99247 0.95757 1.20811 0.98703 0.86302 0.92341 0.90604 1.58874 1.09764 1.62632 1.03559 1.19114 0.92760 0.97388 0.90632 1.21138 1.25436 0.92366 1.14402 0.92035 1.25022 0.96397 0.97412 0.96073 1.69969 1.31023 1.33619 1.19730 0.86645 0.77970 0.85869 0.77379 1.20321 1.21616 1.20446 1.21061 0.96763 0.95699 0.99791 1.20939 0.99354 0.93160 1.00157 0.92996 0.91713 0.93007 0.91080 0.92857 0.92739 0.92824 0.91481 0.91465 0.86798 0.86522 0.86816 0.85341 0.96601 0.96278 0.93222 0.86288 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.78 37.15 0.33 -1.31 16 2 C -0.09 -0.95 2.91 -90.62 -0.26 -1.21 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.07 -0.75 4.84 -27.88 -0.13 -0.89 16 5 C -0.10 -1.31 4.70 -104.62 -0.49 -1.80 16 6 C -0.11 -1.62 7.98 -39.58 -0.32 -1.94 16 7 C -0.12 -1.93 9.29 -39.58 -0.37 -2.30 16 8 C -0.10 -1.77 4.94 -104.62 -0.52 -2.28 16 9 C 0.13 2.67 2.93 -68.87 -0.20 2.47 16 10 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 11 N -0.82 -15.43 8.77 -5.66 -0.05 -15.48 16 12 C 0.04 0.99 4.60 -27.88 -0.13 0.86 16 13 C -0.49 -14.15 8.84 -34.44 -0.30 -14.46 16 14 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 15 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 16 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 17 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.11 -1.87 9.67 -39.58 -0.38 -2.26 16 22 C -0.12 -1.68 9.70 -39.58 -0.38 -2.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.83 6.28 -51.93 -0.33 0.50 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.11 1.39 8.05 -52.49 -0.42 0.97 16 33 H 0.12 1.84 6.67 -52.49 -0.35 1.49 16 34 H 0.32 5.11 9.06 -39.29 -0.36 4.76 16 35 H 0.33 5.99 7.35 -39.29 -0.29 5.70 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.12 1.84 8.04 -52.49 -0.42 1.42 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -30.77 325.63 -9.12 -39.89 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.77 Total: 6.97 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.92 Total: -26.69 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.69 Total: -42.37 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.77 -9.12 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259456208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds