Wall clock time and date at job start Mon Mar 30 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.50703 * 109.46912 * 65.00249 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38235 * 119.99933 * 179.78838 * 6 5 4 8 8 C 1.38240 * 119.99615 * 0.44078 * 7 6 5 9 9 C 1.50703 * 119.99825 * 179.83444 * 8 7 6 10 10 H 1.08995 * 109.47327 * 199.97685 * 9 8 7 11 11 N 1.46901 * 109.46999 * 319.97974 * 9 8 7 12 12 C 1.52995 * 109.47165 * 79.97581 * 9 8 7 13 13 C 1.50705 * 109.47430 * 174.99845 * 12 9 8 14 14 H 1.08000 * 119.99463 * 0.02562 * 13 12 9 15 15 C 1.37870 * 120.00485 * 180.02562 * 13 12 9 16 16 N 1.31523 * 119.99907 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47024 * 60.00231 * 17 15 13 19 19 H 1.48506 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47242 * 300.00376 * 17 15 13 21 21 C 1.38227 * 120.00231 * 359.81118 * 8 7 6 22 22 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 23 23 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 24 24 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 26 26 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 27 27 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 29 29 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 30 30 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 31 31 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 32 32 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.00360 * 180.27290 * 7 6 5 34 34 H 1.00904 * 111.00324 * 296.04275 * 11 9 8 35 35 H 1.00903 * 111.00359 * 60.00060 * 11 9 8 36 36 H 1.09001 * 109.47466 * 294.99891 * 12 9 8 37 37 H 1.09001 * 109.46963 * 55.00306 * 12 9 8 38 38 H 0.96997 * 120.00005 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.00166 * 179.97438 * 21 8 7 40 40 H 1.07996 * 120.00605 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1889 6 6 0.4381 -2.5829 1.7324 7 6 0.0705 -3.9141 1.6731 8 6 0.9102 -4.8372 1.0784 9 6 0.5111 -6.2891 1.0172 10 1 1.3970 -6.9029 0.8543 11 7 -0.1264 -6.6756 2.2829 12 6 -0.4737 -6.4992 -0.1347 13 6 -0.7780 -7.9686 -0.2740 14 1 -0.3155 -8.6813 0.3928 15 6 -1.6467 -8.4031 -1.2525 16 7 -2.2095 -7.5352 -2.0648 17 14 -2.0244 -10.2244 -1.4246 18 1 -2.6251 -10.7267 -0.1628 19 1 -2.9802 -10.4282 -2.5427 20 1 -0.7687 -10.9660 -1.7045 21 6 2.1157 -4.4285 0.5396 22 6 2.4815 -3.0965 0.5951 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1263 -0.6442 1.2952 31 1 1.6053 -0.2617 2.1370 32 1 -0.2161 -1.8623 2.2006 33 1 -0.8716 -4.2334 2.0938 34 1 0.5242 -6.6072 3.0512 35 1 -0.9509 -6.1205 2.4569 36 1 -1.3955 -5.9552 0.0715 37 1 -0.0334 -6.1300 -1.0610 38 1 -2.8203 -7.8409 -2.7534 39 1 2.7720 -5.1498 0.0754 40 1 3.4234 -2.7772 0.1740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259456208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:43 Heat of formation + Delta-G solvation = -26.743166 kcal Electronic energy + Delta-G solvation = -17581.651895 eV Core-core repulsion = 14972.926788 eV Total energy + Delta-G solvation = -2608.725107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.69240 -37.94195 -36.18292 -34.50187 -31.92104 -31.60650 -30.20789 -27.99975 -27.62434 -25.58183 -23.72328 -22.86792 -21.19196 -20.70350 -18.55546 -17.21375 -17.04376 -16.49005 -16.17031 -15.84984 -15.52947 -15.17852 -14.71669 -14.46992 -14.25446 -14.21710 -13.59254 -13.44350 -13.15513 -13.01431 -12.75775 -12.72769 -12.49996 -12.40328 -12.23935 -11.89936 -11.71623 -11.58457 -11.48638 -11.31280 -11.23195 -10.52498 -9.78624 -9.52963 -9.22234 -8.12816 -6.20107 0.47002 0.53232 1.41397 1.44974 1.52634 2.45849 2.86292 3.19731 3.83159 3.88898 3.93873 4.05818 4.09146 4.12886 4.17505 4.39081 4.47295 4.62376 4.68617 4.78797 4.82781 4.86797 4.93009 4.97901 5.07762 5.08477 5.17845 5.21859 5.35506 5.42614 5.44479 5.49036 5.56100 5.58815 5.75628 5.79234 5.86769 6.16821 6.28553 6.49691 6.80304 6.93854 7.46696 8.98789 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033968 B = 0.004471 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.102794 B = 6261.194614 C = 6623.940534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.068 4.068 5 C -0.089 4.089 6 C -0.114 4.114 7 C -0.130 4.130 8 C -0.124 4.124 9 C 0.145 3.855 10 H 0.068 0.932 11 N -0.828 5.828 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.060 0.940 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.268 1.268 21 C -0.128 4.128 22 C -0.120 4.120 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.340 0.660 35 H 0.337 0.663 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.251 16.385 7.739 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.148 4.148 8 C -0.126 4.126 9 C 0.033 3.967 10 H 0.086 0.914 11 N -0.357 5.357 12 C 0.011 3.989 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.147 4.147 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.026 15.656 7.270 19.479 hybrid contribution -0.421 -0.198 -0.274 0.540 sum 8.605 15.458 6.996 19.025 Atomic orbital electron populations 1.21923 0.95735 1.01211 1.02046 1.21070 0.95696 0.96765 0.97433 1.21808 1.01316 0.94557 1.02235 1.20677 1.01770 0.89293 0.98748 1.20095 0.94321 0.96611 0.97900 1.21169 0.96836 0.94954 1.00231 1.21034 0.99099 0.93900 1.00778 1.21094 0.95290 0.97792 0.98410 1.20325 0.96666 0.88514 0.91168 0.91423 1.58750 1.10458 1.62912 1.03591 1.18902 0.92720 0.95721 0.91583 1.21490 1.25382 0.93618 1.14359 0.92138 1.25933 0.96210 1.02350 0.95694 1.70109 1.31706 1.35905 1.20396 0.85532 0.78102 0.79965 0.77576 1.19526 1.21108 1.19347 1.21204 0.96482 0.97053 0.99968 1.21236 1.00495 0.92255 0.99755 0.92795 0.94168 0.91643 0.92415 0.91921 0.92547 0.91883 0.89834 0.90003 0.84611 0.86731 0.84737 0.84922 0.99300 0.99450 0.93136 0.86196 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.78 71.98 0.63 -2.41 16 2 C -0.09 -1.65 2.91 -10.79 -0.03 -1.68 16 3 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 4 C -0.07 -1.21 4.84 29.85 0.14 -1.07 16 5 C -0.09 -2.22 4.70 -19.87 -0.09 -2.31 16 6 C -0.11 -3.10 7.98 22.27 0.18 -2.92 16 7 C -0.13 -4.27 9.29 22.27 0.21 -4.06 16 8 C -0.12 -4.52 4.94 -19.87 -0.10 -4.61 16 9 C 0.15 6.16 2.93 44.17 0.13 6.29 16 10 H 0.07 2.93 8.00 -2.39 -0.02 2.91 16 11 N -0.83 -31.51 8.77 -171.81 -1.51 -33.01 16 12 C 0.05 2.61 4.60 29.85 0.14 2.75 16 13 C -0.51 -29.90 8.84 25.60 0.23 -29.68 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 15 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 16 N -0.94 -58.93 13.29 21.45 0.28 -58.64 16 17 Si 0.96 46.15 29.54 68.60 2.03 48.17 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.13 -4.22 9.67 22.27 0.22 -4.00 16 22 C -0.12 -3.23 9.70 22.27 0.22 -3.02 16 23 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 24 H 0.04 0.99 6.28 -2.39 -0.01 0.98 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.27 8.09 -2.39 -0.02 1.26 16 31 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 32 H 0.14 3.04 8.05 -2.91 -0.02 3.02 16 33 H 0.11 3.71 6.67 -2.91 -0.02 3.69 16 34 H 0.34 10.74 9.06 -89.69 -0.81 9.92 16 35 H 0.34 12.36 7.35 -89.69 -0.66 11.70 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.12 3.78 8.04 -2.91 -0.02 3.76 16 40 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -67.22 325.63 3.33 -63.90 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.46 Total: 27.45 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.99 Total: -47.86 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -1.22 Total: -91.66 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -67.22 3.33 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259456208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.153 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds