Wall clock time and date at job start Mon Mar 30 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38241 * 119.99807 * 179.74606 * 6 5 4 8 8 C 1.38230 * 119.99841 * 0.54700 * 7 6 5 9 9 C 1.50704 * 119.99721 * 179.72519 * 8 7 6 10 10 H 1.09003 * 109.46757 * 159.97874 * 9 8 7 11 11 N 1.46904 * 109.47265 * 39.98316 * 9 8 7 12 12 C 1.53001 * 109.47420 * 279.97915 * 9 8 7 13 13 C 1.50691 * 109.47102 * 185.00005 * 12 9 8 14 14 H 1.08002 * 120.00279 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00215 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99523 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00444 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46874 * 60.00532 * 17 15 13 19 19 H 1.48491 * 109.47033 * 180.02562 * 17 15 13 20 20 H 1.48490 * 109.47118 * 300.00683 * 17 15 13 21 21 C 1.38234 * 120.00590 * 359.70368 * 8 7 6 22 22 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 33 33 H 1.07995 * 119.99995 * 180.27546 * 7 6 5 34 34 H 1.00899 * 110.99440 * 300.00100 * 11 9 8 35 35 H 1.00903 * 110.99888 * 63.94524 * 11 9 8 36 36 H 1.09001 * 109.46980 * 305.00368 * 12 9 8 37 37 H 1.09002 * 109.46799 * 64.99878 * 12 9 8 38 38 H 0.97001 * 119.99596 * 179.97438 * 16 15 13 39 39 H 1.07994 * 120.00518 * 179.97438 * 21 8 7 40 40 H 1.08001 * 120.00265 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1161 -4.4286 -0.5401 8 6 0.9105 -4.8373 -1.0790 9 6 0.5121 -6.2895 -1.0191 10 1 -0.5663 -6.3761 -1.1518 11 7 0.8913 -6.8479 0.2857 12 6 1.2264 -7.0606 -2.1309 13 6 0.7357 -8.4853 -2.1491 14 1 -0.0111 -8.8084 -1.4391 15 6 1.2396 -9.3762 -3.0730 16 7 2.1487 -8.9826 -3.9381 17 14 0.6320 -11.1425 -3.0952 18 1 -0.8323 -11.1591 -3.3424 19 1 1.3251 -11.8908 -4.1744 20 1 0.9203 -11.7816 -1.7863 21 6 0.0702 -3.9140 -1.6725 22 6 0.4357 -2.5819 -1.7275 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 3.4283 -2.7789 -0.1837 33 1 2.7724 -5.1499 -0.0761 34 1 1.8871 -6.7792 0.4327 35 1 0.3837 -6.3981 1.0328 36 1 1.0155 -6.5913 -3.0919 37 1 2.3010 -7.0486 -1.9488 38 1 2.5034 -9.6095 -4.5878 39 1 -0.8715 -4.2334 -2.0938 40 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259456209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:46 Heat of formation + Delta-G solvation = -9.188672 kcal Electronic energy + Delta-G solvation = -17514.867977 eV Core-core repulsion = 14906.904090 eV Total energy + Delta-G solvation = -2607.963887 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49409 -36.81001 -34.82659 -32.41779 -30.82412 -30.32859 -28.25690 -27.30014 -26.43417 -23.77801 -22.40525 -21.53715 -20.06220 -19.47323 -16.59972 -15.87983 -15.51740 -15.00498 -14.84678 -14.41274 -14.38507 -14.14092 -13.68512 -13.07241 -12.88578 -12.53536 -12.42018 -12.35086 -12.07653 -11.83204 -11.48041 -11.13989 -11.04504 -10.85165 -10.79149 -10.62684 -10.56877 -10.50058 -10.13640 -9.54572 -9.06486 -8.58065 -8.26879 -8.08331 -7.84526 -5.88324 -3.87248 1.69266 1.73583 3.41984 3.45322 3.49252 4.06842 4.56876 4.70970 4.74543 4.84570 5.12627 5.24177 5.30035 5.37261 5.43425 5.45220 5.49257 5.54102 5.54967 5.68592 5.77186 5.79744 5.84870 5.95451 5.99509 6.16787 6.17943 6.22109 6.38330 6.45145 6.76357 6.81542 6.87453 7.06179 7.36410 7.58736 7.74459 8.02599 8.12667 8.22084 8.56328 9.18742 9.74475 11.23390 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.051041 B = 0.004035 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.451228 B = 6937.770456 C = 7017.861635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.098 4.098 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.099 4.099 9 C 0.130 3.870 10 H 0.076 0.924 11 N -0.821 5.821 12 C 0.038 3.962 13 C -0.495 4.495 14 H 0.061 0.939 15 C 0.050 3.950 16 N -0.903 5.903 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.333 0.667 35 H 0.321 0.679 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.258 0.742 39 H 0.119 0.881 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 18.485 7.618 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.101 4.101 9 C 0.018 3.982 10 H 0.094 0.906 11 N -0.348 5.348 12 C 0.001 3.999 13 C -0.533 4.533 14 H 0.080 0.920 15 C -0.149 4.149 16 N -0.543 5.543 17 Si 0.722 3.278 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.134 4.134 22 C -0.133 4.133 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.298 17.698 7.189 19.146 hybrid contribution 0.155 -0.024 0.022 0.158 sum -1.143 17.673 7.212 19.122 Atomic orbital electron populations 1.21915 0.95220 1.02388 1.01201 1.21080 0.96138 0.95559 0.98175 1.21856 1.00867 0.96100 1.01621 1.20620 1.00781 0.91590 0.97985 1.19686 0.95120 0.95014 0.99952 1.20908 0.99112 0.93116 1.00324 1.20934 0.96413 0.95527 1.00725 1.21370 0.94153 0.98701 0.95861 1.20815 1.00253 0.85394 0.91699 0.90602 1.58879 1.10612 1.62506 1.02814 1.19113 0.95232 0.94463 0.91091 1.21138 1.22565 0.94588 1.15044 0.92030 1.25031 0.95430 0.98655 0.95831 1.69971 1.29459 1.35141 1.19777 0.86637 0.78749 0.85047 0.77392 1.20444 1.21625 1.20321 1.21071 0.99958 0.92752 0.99637 1.20946 0.96273 0.95763 1.00346 0.91891 0.93137 0.92899 0.91236 0.92820 0.92776 0.92739 0.91347 0.91372 0.86835 0.86519 0.85342 0.86828 0.96275 0.96601 0.93214 0.86288 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.76 37.16 0.33 -1.08 16 2 C -0.09 -0.85 2.91 -90.62 -0.26 -1.12 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.07 -0.76 4.84 -27.89 -0.14 -0.90 16 5 C -0.10 -1.31 4.71 -104.63 -0.49 -1.80 16 6 C -0.12 -1.68 9.70 -39.58 -0.38 -2.06 16 7 C -0.12 -1.93 9.29 -39.58 -0.37 -2.30 16 8 C -0.10 -1.76 4.94 -104.62 -0.52 -2.28 16 9 C 0.13 2.67 2.93 -68.86 -0.20 2.47 16 10 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 11 N -0.82 -15.43 8.77 -5.65 -0.05 -15.48 16 12 C 0.04 0.99 4.60 -27.89 -0.13 0.86 16 13 C -0.49 -14.16 8.84 -34.44 -0.30 -14.47 16 14 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 17 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.12 -1.88 9.67 -39.58 -0.38 -2.27 16 22 C -0.12 -1.63 7.96 -39.58 -0.32 -1.94 16 23 H 0.06 0.67 6.27 -51.93 -0.33 0.35 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.12 1.85 6.66 -52.49 -0.35 1.50 16 34 H 0.33 6.00 7.35 -39.29 -0.29 5.71 16 35 H 0.32 5.11 9.06 -39.29 -0.36 4.76 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.12 1.83 8.04 -52.49 -0.42 1.41 16 40 H 0.11 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -30.84 325.57 -9.12 -39.95 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.77 Total: 6.55 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -2.92 Total: -26.31 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.69 Total: -42.42 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.84 -9.12 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259456209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.763 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds