Wall clock time and date at job start Mon Mar 30 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38241 * 119.99807 * 179.74606 * 6 5 4 8 8 C 1.38230 * 119.99841 * 0.54700 * 7 6 5 9 9 C 1.50704 * 119.99721 * 179.72519 * 8 7 6 10 10 H 1.09003 * 109.46757 * 159.97874 * 9 8 7 11 11 N 1.46904 * 109.47265 * 39.98316 * 9 8 7 12 12 C 1.53001 * 109.47420 * 279.97915 * 9 8 7 13 13 C 1.50691 * 109.47102 * 185.00005 * 12 9 8 14 14 H 1.08002 * 120.00279 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00215 * 179.97438 * 13 12 9 16 16 N 1.31521 * 119.99523 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00444 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46874 * 60.00532 * 17 15 13 19 19 H 1.48491 * 109.47033 * 180.02562 * 17 15 13 20 20 H 1.48490 * 109.47118 * 300.00683 * 17 15 13 21 21 C 1.38234 * 120.00590 * 359.70368 * 8 7 6 22 22 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 33 33 H 1.07995 * 119.99995 * 180.27546 * 7 6 5 34 34 H 1.00899 * 110.99440 * 300.00100 * 11 9 8 35 35 H 1.00903 * 110.99888 * 63.94524 * 11 9 8 36 36 H 1.09001 * 109.46980 * 305.00368 * 12 9 8 37 37 H 1.09002 * 109.46799 * 64.99878 * 12 9 8 38 38 H 0.97001 * 119.99596 * 179.97438 * 16 15 13 39 39 H 1.07994 * 120.00518 * 179.97438 * 21 8 7 40 40 H 1.08001 * 120.00265 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1161 -4.4286 -0.5401 8 6 0.9105 -4.8373 -1.0790 9 6 0.5121 -6.2895 -1.0191 10 1 -0.5663 -6.3761 -1.1518 11 7 0.8913 -6.8479 0.2857 12 6 1.2264 -7.0606 -2.1309 13 6 0.7357 -8.4853 -2.1491 14 1 -0.0111 -8.8084 -1.4391 15 6 1.2396 -9.3762 -3.0730 16 7 2.1487 -8.9826 -3.9381 17 14 0.6320 -11.1425 -3.0952 18 1 -0.8323 -11.1591 -3.3424 19 1 1.3251 -11.8908 -4.1744 20 1 0.9203 -11.7816 -1.7863 21 6 0.0702 -3.9140 -1.6725 22 6 0.4357 -2.5819 -1.7275 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 3.4283 -2.7789 -0.1837 33 1 2.7724 -5.1499 -0.0761 34 1 1.8871 -6.7792 0.4327 35 1 0.3837 -6.3981 1.0328 36 1 1.0155 -6.5913 -3.0919 37 1 2.3010 -7.0486 -1.9488 38 1 2.5034 -9.6095 -4.5878 39 1 -0.8715 -4.2334 -2.0938 40 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259456209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:45 Heat of formation + Delta-G solvation = -26.722010 kcal Electronic energy + Delta-G solvation = -17515.628280 eV Core-core repulsion = 14906.904090 eV Total energy + Delta-G solvation = -2608.724189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69405 -37.94369 -36.17163 -34.49834 -32.00773 -31.51059 -30.21345 -28.00880 -27.61419 -25.57290 -23.66132 -22.96812 -21.09025 -20.75218 -18.56097 -17.27458 -16.97096 -16.46938 -16.09604 -16.05970 -15.31627 -15.19611 -14.88709 -14.34290 -14.28240 -14.16933 -13.65086 -13.41194 -13.12586 -12.98774 -12.90953 -12.64165 -12.53684 -12.35228 -12.26386 -11.83037 -11.70674 -11.55746 -11.49137 -11.34766 -11.23874 -10.52452 -9.78512 -9.52785 -9.22444 -8.12825 -6.20014 0.46966 0.53010 1.41450 1.45055 1.52720 2.45894 2.86331 3.19694 3.81997 3.88930 3.93968 4.05908 4.09278 4.13030 4.18757 4.39542 4.47829 4.63183 4.67736 4.79755 4.84309 4.86932 4.92682 5.00303 5.08723 5.09791 5.17388 5.22241 5.35357 5.43212 5.45957 5.49905 5.55897 5.58938 5.75509 5.79238 5.86890 6.16546 6.28649 6.49721 6.80067 6.94013 7.46686 8.98824 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.051041 B = 0.004035 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.451228 B = 6937.770456 C = 7017.861635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.128 4.128 8 C -0.123 4.123 9 C 0.145 3.855 10 H 0.068 0.932 11 N -0.828 5.828 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.060 0.940 15 C -0.006 4.006 16 N -0.940 5.940 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.270 1.270 21 C -0.129 4.129 22 C -0.114 4.114 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.337 0.663 35 H 0.340 0.660 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 19.856 8.311 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.108 4.108 5 C -0.089 4.089 6 C -0.138 4.138 7 C -0.147 4.147 8 C -0.126 4.126 9 C 0.033 3.967 10 H 0.086 0.914 11 N -0.357 5.357 12 C 0.011 3.989 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.203 4.203 16 N -0.581 5.581 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.147 4.147 22 C -0.131 4.131 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.581 19.082 7.904 20.715 hybrid contribution 0.257 -0.353 -0.183 0.473 sum -1.324 18.729 7.721 20.302 Atomic orbital electron populations 1.21915 0.95262 1.01534 1.02038 1.21047 0.96064 0.96429 0.97108 1.21823 1.01191 0.94848 1.02252 1.20693 1.01548 0.89480 0.99081 1.20077 0.94285 0.96569 0.97940 1.21196 1.00197 0.92309 1.00113 1.21023 0.95943 0.96708 1.01016 1.21093 0.95688 0.97262 0.98520 1.20330 0.98848 0.86793 0.90704 0.91412 1.58756 1.11217 1.63003 1.02719 1.18902 0.94029 0.94231 0.91775 1.21491 1.22435 0.95967 1.14932 0.92138 1.25945 0.95544 1.03376 0.95400 1.70110 1.30738 1.36749 1.20537 0.85524 0.78580 0.79380 0.77647 1.19340 1.21125 1.19533 1.21213 1.00050 0.93733 0.99747 1.21203 0.96906 0.95129 0.99909 0.93515 0.92381 0.92092 0.91943 0.92178 0.92282 0.92168 0.90345 0.90402 0.84534 0.86703 0.84925 0.84767 0.99401 0.99289 0.93120 0.86181 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.76 71.98 0.63 -1.82 16 2 C -0.09 -1.41 2.91 -10.79 -0.03 -1.44 16 3 C -0.14 -1.79 9.19 71.98 0.66 -1.13 16 4 C -0.07 -1.29 4.84 29.84 0.14 -1.15 16 5 C -0.09 -2.21 4.71 -19.87 -0.09 -2.30 16 6 C -0.12 -3.30 9.70 22.27 0.22 -3.08 16 7 C -0.13 -4.23 9.29 22.27 0.21 -4.02 16 8 C -0.12 -4.50 4.94 -19.87 -0.10 -4.60 16 9 C 0.15 6.14 2.93 44.17 0.13 6.27 16 10 H 0.07 2.93 8.00 -2.39 -0.02 2.91 16 11 N -0.83 -31.49 8.77 -171.78 -1.51 -33.00 16 12 C 0.05 2.60 4.60 29.85 0.14 2.74 16 13 C -0.51 -29.86 8.84 25.60 0.23 -29.64 16 14 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 15 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 16 N -0.94 -58.92 13.29 21.45 0.28 -58.64 16 17 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 C -0.13 -4.21 9.67 22.27 0.22 -3.99 16 22 C -0.11 -3.05 7.96 22.27 0.18 -2.87 16 23 H 0.05 0.91 6.27 -2.39 -0.01 0.90 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 31 H 0.08 1.30 8.08 -2.39 -0.02 1.29 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.12 3.71 6.66 -2.91 -0.02 3.69 16 34 H 0.34 12.35 7.35 -89.69 -0.66 11.69 16 35 H 0.34 10.74 9.06 -89.69 -0.81 9.93 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.12 3.77 8.04 -2.91 -0.02 3.74 16 40 H 0.14 2.99 8.04 -2.91 -0.02 2.97 16 Total: -1.00 -66.96 325.57 3.33 -63.63 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: -0.46 Total: 26.78 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 2.98 Total: -46.95 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -1.22 Total: -91.63 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -66.96 3.33 -63.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259456209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.909 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds