Wall clock time and date at job start Mon Mar 30 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47453 * 2 1 4 4 C 1.50698 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99552 * 90.00287 * 4 3 2 6 6 C 1.38238 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.38235 * 119.99730 * 359.95406 * 6 5 4 8 8 C 1.50695 * 119.99971 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47050 * 280.55735 * 8 7 6 10 10 C 1.53003 * 109.47284 * 160.55933 * 8 7 6 11 11 C 1.50698 * 109.47189 * 174.99648 * 10 8 7 12 12 H 1.08005 * 119.99851 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00384 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99264 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46830 * 59.99991 * 15 13 11 17 17 H 1.48497 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47029 * 300.00121 * 15 13 11 19 19 N 1.46899 * 109.47134 * 40.55914 * 8 7 6 20 20 C 1.46895 * 111.00256 * 62.75280 * 19 8 7 21 21 C 1.38237 * 119.99817 * 0.27415 * 7 6 5 22 22 C 1.38228 * 120.00387 * 359.51545 * 21 7 6 23 23 H 1.08992 * 109.47000 * 59.99577 * 1 2 3 24 24 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46680 * 300.00321 * 1 2 3 26 26 H 1.08998 * 109.47061 * 240.00354 * 2 1 3 27 27 H 1.08998 * 109.47319 * 119.99801 * 2 1 3 28 28 H 1.09009 * 109.47114 * 59.99831 * 3 2 1 29 29 H 1.09003 * 109.47218 * 300.00680 * 3 2 1 30 30 H 1.08002 * 120.00542 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00076 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.46920 * 294.99868 * 10 8 7 33 33 H 1.09002 * 109.46953 * 55.00029 * 10 8 7 34 34 H 0.97002 * 119.99588 * 179.97438 * 14 13 11 35 35 H 1.00911 * 110.99755 * 186.70685 * 19 8 7 36 36 H 1.09001 * 109.47266 * 186.66921 * 20 19 8 37 37 H 1.09000 * 109.47000 * 306.67045 * 20 19 8 38 38 H 1.09004 * 109.47340 * 66.66912 * 20 19 8 39 39 H 1.08006 * 119.99560 * 179.73090 * 21 7 6 40 40 H 1.07996 * 120.00739 * 180.24738 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4419 -1.1958 7 6 6.3118 1.4424 0.0016 8 6 7.8187 1.4424 0.0022 9 1 8.1821 0.4320 -0.1855 10 6 8.3282 1.9232 1.3625 11 6 9.8301 1.8069 1.4060 12 1 10.3674 1.4277 0.5493 13 6 10.5182 2.1838 2.5399 14 7 9.8637 2.6441 3.5835 15 14 12.3799 2.0404 2.5936 16 1 12.9720 2.8779 1.5197 17 1 12.8743 2.5057 3.9143 18 1 12.7732 0.6231 2.3897 19 7 8.3088 2.3425 -1.0502 20 6 7.8922 3.7277 -0.7944 21 6 5.6201 1.4378 1.1985 22 6 4.2378 1.4427 1.1980 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.6991 1.4419 -2.1318 31 1 6.1614 1.4414 -2.1309 32 1 8.0398 2.9637 1.5114 33 1 7.8933 1.3091 2.1511 34 1 10.3477 2.9089 4.3814 35 1 9.3115 2.2778 -1.1434 36 1 8.1650 4.3522 -1.6451 37 1 6.8123 3.7616 -0.6502 38 1 8.3902 4.0972 0.1021 39 1 6.1598 1.4338 2.1340 40 1 3.6974 1.4431 2.1331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259466506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:39 Heat of formation + Delta-G solvation = -0.443240 kcal Electronic energy + Delta-G solvation = -17723.134253 eV Core-core repulsion = 15115.549597 eV Total energy + Delta-G solvation = -2607.584656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32431 -36.64172 -34.55115 -32.65417 -30.97868 -30.42737 -28.76886 -26.59252 -24.99349 -23.58904 -22.26890 -21.70668 -20.76251 -19.03029 -16.62767 -15.64114 -15.59660 -15.13108 -14.60760 -14.53456 -14.01921 -13.86880 -13.51519 -12.99495 -12.88358 -12.72671 -12.21278 -12.04849 -11.97424 -11.63538 -11.35468 -11.14402 -11.04516 -10.90207 -10.83371 -10.68864 -10.50465 -10.30257 -10.03125 -9.70686 -9.12005 -8.43409 -8.38528 -7.96052 -7.49596 -6.07569 -4.10991 1.83789 1.93023 3.28383 3.33497 3.35467 4.24014 4.39334 4.88349 4.91715 5.07566 5.14831 5.30337 5.32694 5.44528 5.48432 5.59099 5.68758 5.74701 5.78406 5.92904 5.99776 6.08464 6.11041 6.25409 6.25566 6.32217 6.44090 6.54483 6.60007 6.67098 6.80560 6.95026 7.04188 7.25189 7.42904 7.56161 7.64169 7.84031 7.97964 8.20701 8.33926 8.95053 9.53666 11.03308 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.004608 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.935985 B = 6075.489007 C = 6504.124696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.100 4.100 5 C -0.130 4.130 6 C -0.099 4.099 7 C -0.064 4.064 8 C 0.119 3.881 9 H 0.079 0.921 10 C -0.006 4.006 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 N -0.681 5.681 20 C 0.027 3.973 21 C -0.112 4.112 22 C -0.124 4.124 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.345 0.655 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.133 0.867 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 -2.301 -7.318 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.113 4.113 4 C -0.100 4.100 5 C -0.148 4.148 6 C -0.117 4.117 7 C -0.064 4.064 8 C 0.009 3.991 9 H 0.097 0.903 10 C -0.044 4.044 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 N -0.311 5.311 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.142 4.142 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.150 0.850 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.180 -2.359 -7.568 16.245 hybrid contribution 1.693 0.247 0.990 1.977 sum -12.487 -2.111 -6.578 14.270 Atomic orbital electron populations 1.21793 0.96074 1.01430 1.01650 1.21514 0.95186 0.96560 1.02402 1.20558 0.91651 0.96870 1.02221 1.19739 0.94919 1.01898 0.93450 1.20923 0.94359 1.02712 0.96827 1.21055 0.93216 0.98968 0.98477 1.20167 0.96300 0.97381 0.92596 1.20618 0.88610 0.96586 0.93264 0.90299 1.19817 0.95917 0.97243 0.91384 1.21127 0.91951 1.43287 0.99923 0.92731 1.24992 0.98348 0.95097 0.95686 1.69952 1.35658 1.43255 1.04177 0.86667 0.85722 0.78511 0.77174 1.20239 1.21324 1.20207 1.60784 1.18352 1.06486 1.45438 1.22106 1.00360 0.90170 0.99652 1.21435 0.93736 0.98773 0.99069 1.20943 0.94268 1.02009 0.96980 0.92870 0.92889 0.92818 0.91959 0.91872 0.91510 0.91584 0.87118 0.85695 0.95715 0.95898 0.92892 0.83701 0.93253 0.92741 0.94374 0.84977 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.08 -0.85 5.34 -27.88 -0.15 -1.00 16 4 C -0.10 -1.44 5.13 -104.63 -0.54 -1.98 16 5 C -0.13 -1.93 9.70 -39.58 -0.38 -2.31 16 6 C -0.10 -1.65 8.73 -39.58 -0.35 -2.00 16 7 C -0.06 -1.20 4.33 -104.63 -0.45 -1.66 16 8 C 0.12 2.45 2.88 -68.87 -0.20 2.25 16 9 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 10 C -0.01 -0.14 3.33 -27.88 -0.09 -0.23 16 11 C -0.52 -14.13 8.59 -34.44 -0.30 -14.43 16 12 H 0.05 1.42 7.15 -52.48 -0.38 1.04 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 N -0.68 -13.04 6.04 -115.25 -0.70 -13.73 16 20 C 0.03 0.51 9.77 60.06 0.59 1.10 16 21 C -0.11 -2.08 9.11 -39.59 -0.36 -2.44 16 22 C -0.12 -1.97 9.70 -39.59 -0.38 -2.36 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.71 8.09 -51.92 -0.42 0.29 16 29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.13 2.03 7.74 -52.49 -0.41 1.63 16 32 H 0.02 0.66 6.24 -51.93 -0.32 0.34 16 33 H 0.02 0.61 6.36 -51.93 -0.33 0.28 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.35 6.72 7.81 -39.29 -0.31 6.41 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 1.02 6.59 -51.93 -0.34 0.68 16 38 H 0.04 0.81 6.54 -51.93 -0.34 0.47 16 39 H 0.13 2.65 5.85 -52.48 -0.31 2.35 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -28.35 319.97 -9.17 -37.52 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.51 Total: 6.31 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.50 Total: -25.73 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.04 Total: -39.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.35 -9.17 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.080 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds