Wall clock time and date at job start Mon Mar 30 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47453 * 2 1 4 4 C 1.50698 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99552 * 90.00287 * 4 3 2 6 6 C 1.38238 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.38235 * 119.99730 * 359.95406 * 6 5 4 8 8 C 1.50695 * 119.99971 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47050 * 280.55735 * 8 7 6 10 10 C 1.53003 * 109.47284 * 160.55933 * 8 7 6 11 11 C 1.50698 * 109.47189 * 174.99648 * 10 8 7 12 12 H 1.08005 * 119.99851 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00384 * 180.02562 * 11 10 8 14 14 N 1.31517 * 119.99264 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46830 * 59.99991 * 15 13 11 17 17 H 1.48497 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47029 * 300.00121 * 15 13 11 19 19 N 1.46899 * 109.47134 * 40.55914 * 8 7 6 20 20 C 1.46895 * 111.00256 * 62.75280 * 19 8 7 21 21 C 1.38237 * 119.99817 * 0.27415 * 7 6 5 22 22 C 1.38228 * 120.00387 * 359.51545 * 21 7 6 23 23 H 1.08992 * 109.47000 * 59.99577 * 1 2 3 24 24 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46680 * 300.00321 * 1 2 3 26 26 H 1.08998 * 109.47061 * 240.00354 * 2 1 3 27 27 H 1.08998 * 109.47319 * 119.99801 * 2 1 3 28 28 H 1.09009 * 109.47114 * 59.99831 * 3 2 1 29 29 H 1.09003 * 109.47218 * 300.00680 * 3 2 1 30 30 H 1.08002 * 120.00542 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00076 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.46920 * 294.99868 * 10 8 7 33 33 H 1.09002 * 109.46953 * 55.00029 * 10 8 7 34 34 H 0.97002 * 119.99588 * 179.97438 * 14 13 11 35 35 H 1.00911 * 110.99755 * 186.70685 * 19 8 7 36 36 H 1.09001 * 109.47266 * 186.66921 * 20 19 8 37 37 H 1.09000 * 109.47000 * 306.67045 * 20 19 8 38 38 H 1.09004 * 109.47340 * 66.66912 * 20 19 8 39 39 H 1.08006 * 119.99560 * 179.73090 * 21 7 6 40 40 H 1.07996 * 120.00739 * 180.24738 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2387 1.4424 -1.1963 6 6 5.6210 1.4419 -1.1958 7 6 6.3118 1.4424 0.0016 8 6 7.8187 1.4424 0.0022 9 1 8.1821 0.4320 -0.1855 10 6 8.3282 1.9232 1.3625 11 6 9.8301 1.8069 1.4060 12 1 10.3674 1.4277 0.5493 13 6 10.5182 2.1838 2.5399 14 7 9.8637 2.6441 3.5835 15 14 12.3799 2.0404 2.5936 16 1 12.9720 2.8779 1.5197 17 1 12.8743 2.5057 3.9143 18 1 12.7732 0.6231 2.3897 19 7 8.3088 2.3425 -1.0502 20 6 7.8922 3.7277 -0.7944 21 6 5.6201 1.4378 1.1985 22 6 4.2378 1.4427 1.1980 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.6991 1.4419 -2.1318 31 1 6.1614 1.4414 -2.1309 32 1 8.0398 2.9637 1.5114 33 1 7.8933 1.3091 2.1511 34 1 10.3477 2.9089 4.3814 35 1 9.3115 2.2778 -1.1434 36 1 8.1650 4.3522 -1.6451 37 1 6.8123 3.7616 -0.6502 38 1 8.3902 4.0972 0.1021 39 1 6.1598 1.4338 2.1340 40 1 3.6974 1.4431 2.1331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:39 Heat of formation + Delta-G solvation = -15.644455 kcal Electronic energy + Delta-G solvation = -17723.793427 eV Core-core repulsion = 15115.549597 eV Total energy + Delta-G solvation = -2608.243831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68201 -38.11125 -35.62197 -34.69913 -32.29995 -31.69897 -30.46768 -28.02289 -26.41420 -25.38537 -23.52464 -22.97700 -21.89712 -20.54682 -18.63458 -17.13118 -17.00986 -16.61629 -16.25513 -15.80794 -15.35679 -15.20418 -14.57394 -14.41714 -14.28291 -14.09797 -13.84420 -13.64813 -13.09275 -12.94921 -12.82064 -12.65269 -12.56521 -12.40176 -12.17510 -12.02924 -11.85782 -11.63562 -11.48602 -11.38279 -11.10485 -10.57786 -9.70386 -9.28078 -9.18034 -8.22177 -6.33054 0.53298 0.61797 1.38141 1.40240 1.47834 2.37947 2.93444 3.11052 3.58130 3.89322 4.02945 4.13974 4.24551 4.28505 4.33204 4.58332 4.59566 4.62704 4.66663 4.75267 4.78153 4.92649 4.93574 4.99407 5.06777 5.10324 5.16375 5.24926 5.33375 5.35908 5.40855 5.50574 5.58070 5.62667 5.75247 5.81546 5.86657 6.17458 6.24788 6.28122 6.61250 6.82913 7.36089 8.89140 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.004608 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.935985 B = 6075.489007 C = 6504.124696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.090 4.090 5 C -0.124 4.124 6 C -0.099 4.099 7 C -0.086 4.086 8 C 0.129 3.871 9 H 0.072 0.928 10 C 0.008 3.992 11 C -0.537 4.537 12 H 0.063 0.937 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.268 1.268 19 N -0.666 5.666 20 C 0.036 3.964 21 C -0.134 4.134 22 C -0.128 4.128 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.132 0.868 32 H -0.003 1.003 33 H -0.006 1.006 34 H 0.262 0.738 35 H 0.343 0.657 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.003 0.997 39 H 0.102 0.898 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.837 -2.474 -9.307 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.110 4.110 4 C -0.090 4.090 5 C -0.142 4.142 6 C -0.117 4.117 7 C -0.087 4.087 8 C 0.019 3.981 9 H 0.090 0.910 10 C -0.030 4.030 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.193 1.193 19 N -0.295 5.295 20 C -0.114 4.114 21 C -0.153 4.153 22 C -0.146 4.146 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.120 0.880 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.339 -2.537 -9.577 18.260 hybrid contribution 1.952 0.302 1.608 2.547 sum -13.388 -2.235 -7.968 15.739 Atomic orbital electron populations 1.21764 0.94466 1.02096 1.02297 1.21488 0.96564 0.95559 1.01896 1.20626 0.88974 0.97906 1.03512 1.20125 0.96870 0.99501 0.92544 1.21277 0.93584 1.00966 0.98337 1.21114 0.94251 0.98796 0.97533 1.19998 0.95009 0.99924 0.93720 1.20370 0.90399 0.96221 0.91068 0.91037 1.19628 0.95105 0.95061 0.93228 1.21551 0.93142 1.42660 1.00170 0.91894 1.25913 1.03465 0.94757 0.95323 1.70102 1.37632 1.44511 1.04856 0.85548 0.79599 0.78896 0.77295 1.19071 1.21268 1.19300 1.60834 1.18128 1.06492 1.44073 1.22054 0.99953 0.90067 0.99304 1.21295 0.95114 1.00959 0.97915 1.21123 0.93123 1.01646 0.98680 0.91936 0.92289 0.92476 0.92050 0.92903 0.90795 0.89780 0.83841 0.85027 0.98476 0.98746 0.92940 0.83911 0.90247 0.92778 0.97785 0.88043 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -2.07 5.92 30.60 0.18 -1.89 16 3 C -0.07 -1.41 5.34 29.85 0.16 -1.25 16 4 C -0.09 -2.40 5.13 -19.87 -0.10 -2.50 16 5 C -0.12 -3.32 9.70 22.27 0.22 -3.11 16 6 C -0.10 -3.17 8.73 22.27 0.19 -2.97 16 7 C -0.09 -3.30 4.33 -19.87 -0.09 -3.39 16 8 C 0.13 5.51 2.88 44.17 0.13 5.64 16 9 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 10 C 0.01 0.42 3.33 29.85 0.10 0.52 16 11 C -0.54 -29.77 8.59 25.60 0.22 -29.55 16 12 H 0.06 3.30 7.15 -2.91 -0.02 3.28 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 15 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 N -0.67 -25.49 6.04 -518.54 -3.13 -28.62 16 20 C 0.04 1.36 9.77 127.69 1.25 2.60 16 21 C -0.13 -5.21 9.11 22.27 0.20 -5.01 16 22 C -0.13 -4.04 9.70 22.27 0.22 -3.82 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.36 8.09 -2.38 -0.02 1.34 16 29 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.13 4.02 7.74 -2.91 -0.02 3.99 16 32 H 0.00 -0.17 6.24 -2.39 -0.01 -0.19 16 33 H -0.01 -0.33 6.36 -2.39 -0.02 -0.34 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 35 H 0.34 13.30 7.81 -89.68 -0.70 12.60 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 2.02 6.59 -2.39 -0.02 2.00 16 38 H 0.00 0.16 6.54 -2.39 -0.02 0.14 16 39 H 0.10 4.48 5.85 -2.91 -0.02 4.47 16 40 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -62.71 319.97 3.34 -59.37 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.31 Total: 24.85 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 3.85 Total: -45.38 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.84 Total: -84.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.71 3.34 -59.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.727 kcal (2) G-P(sol) polarization free energy of solvation -62.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds