Wall clock time and date at job start Mon Mar 30 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47203 * 2 1 4 4 C 1.50707 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.99926 * 90.00259 * 4 3 2 6 6 C 1.38233 * 120.00041 * 179.97438 * 5 4 3 7 7 C 1.38241 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00234 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47299 * 346.83572 * 8 7 6 10 10 C 1.52999 * 109.47241 * 106.83631 * 8 7 6 11 11 C 1.50699 * 109.47256 * 185.00326 * 10 8 7 12 12 H 1.08000 * 119.99948 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99813 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00332 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99629 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47279 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46681 * 120.00010 * 15 13 11 18 18 H 1.48492 * 109.47058 * 239.99983 * 15 13 11 19 19 N 1.46899 * 109.47510 * 226.83636 * 8 7 6 20 20 C 1.46904 * 110.99770 * 84.90196 * 19 8 7 21 21 C 1.38238 * 119.99642 * 0.02562 * 7 6 5 22 22 C 1.38233 * 120.00386 * 359.97438 * 21 7 6 23 23 H 1.08997 * 109.47105 * 300.00188 * 1 2 3 24 24 H 1.08999 * 109.46983 * 59.99848 * 1 2 3 25 25 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46946 * 240.00166 * 2 1 3 27 27 H 1.08999 * 109.46983 * 120.00152 * 2 1 3 28 28 H 1.08992 * 109.47473 * 60.00343 * 3 2 1 29 29 H 1.08999 * 109.47275 * 299.99973 * 3 2 1 30 30 H 1.08000 * 120.00476 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.00302 * 179.69696 * 6 5 4 32 32 H 1.09001 * 109.47192 * 305.00132 * 10 8 7 33 33 H 1.09003 * 109.46846 * 64.99914 * 10 8 7 34 34 H 0.96994 * 119.99830 * 179.97438 * 14 13 11 35 35 H 1.00898 * 110.99643 * 320.95798 * 19 8 7 36 36 H 1.08999 * 109.47431 * 304.30893 * 20 19 8 37 37 H 1.08995 * 109.47350 * 64.30737 * 20 19 8 38 38 H 1.09000 * 109.46931 * 184.30894 * 20 19 8 39 39 H 1.08002 * 119.99462 * 180.02562 * 21 7 6 40 40 H 1.07999 * 120.00106 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4423 -0.0006 5 6 4.2377 1.4425 -1.1981 6 6 5.6200 1.4430 -1.1987 7 6 6.3117 1.4438 -0.0018 8 6 7.8187 1.4437 -0.0024 9 1 8.1817 1.2089 -1.0030 10 6 8.3290 2.8246 0.4143 11 6 9.8308 2.8620 0.2956 12 1 10.3677 1.9881 -0.0428 13 6 10.5195 4.0116 0.6199 14 7 9.8659 5.0753 1.0333 15 14 12.3813 4.0577 0.4734 16 1 12.8726 2.7422 -0.0096 17 1 12.7758 5.1170 -0.4896 18 1 12.9752 4.3508 1.8025 19 7 8.3088 0.4341 0.9456 20 6 8.3690 -0.8925 0.3174 21 6 5.6210 1.4436 1.1957 22 6 4.2387 1.4431 1.1963 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6974 1.4423 -2.1332 31 1 6.1597 1.4382 -2.1342 32 1 7.8941 3.5839 -0.2357 33 1 8.0410 3.0220 1.4469 34 1 10.3505 5.8838 1.2619 35 1 7.7398 0.4141 1.7786 36 1 7.3891 -1.1488 -0.0852 37 1 9.1012 -0.8793 -0.4899 38 1 8.6615 -1.6337 1.0611 39 1 6.1614 1.4446 2.1307 40 1 3.6991 1.4434 2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259466509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:41 Heat of formation + Delta-G solvation = -18.101587 kcal Electronic energy + Delta-G solvation = -17562.490610 eV Core-core repulsion = 14954.140230 eV Total energy + Delta-G solvation = -2608.350380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69805 -37.92243 -35.57049 -34.79247 -32.34756 -31.80253 -30.85515 -27.90153 -26.19234 -24.97829 -23.74619 -23.12032 -21.99537 -20.96877 -18.62476 -17.40699 -16.72607 -16.52925 -16.14448 -15.68216 -15.48058 -14.95083 -14.77672 -14.38975 -14.36304 -14.20986 -14.02580 -13.37142 -13.23944 -13.09217 -12.90657 -12.74055 -12.49160 -12.38923 -12.22417 -12.04320 -11.78523 -11.69053 -11.46591 -11.39949 -11.12172 -10.51008 -9.80903 -9.36838 -9.13110 -8.10708 -6.16964 0.44880 0.51618 1.41536 1.42282 1.55835 2.46907 2.84984 3.21435 3.54831 3.82457 3.90000 4.04509 4.14876 4.17710 4.29129 4.41122 4.53309 4.58989 4.64240 4.67315 4.71148 4.84710 4.90103 4.99859 5.04518 5.05076 5.13597 5.17477 5.29440 5.31185 5.45768 5.48074 5.54376 5.59493 5.71716 5.73651 5.87827 6.15051 6.28122 6.43026 6.64905 6.96601 7.48882 9.01525 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.004484 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.478698 B = 6243.184225 C = 6602.164409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.074 4.074 4 C -0.093 4.093 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.119 4.119 8 C 0.143 3.857 9 H 0.064 0.936 10 C 0.050 3.950 11 C -0.502 4.502 12 H 0.058 0.942 13 C -0.007 4.007 14 N -0.940 5.940 15 Si 0.962 3.038 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.684 5.684 20 C 0.035 3.965 21 C -0.126 4.126 22 C -0.119 4.119 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.121 0.879 32 H -0.014 1.014 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.337 0.663 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 -11.296 -2.414 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.111 4.111 4 C -0.093 4.093 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.121 4.121 8 C 0.033 3.967 9 H 0.082 0.918 10 C 0.013 3.987 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.203 4.203 14 N -0.582 5.582 15 Si 0.787 3.213 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.314 5.314 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.137 4.137 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.005 0.995 33 H 0.010 0.990 34 H 0.068 0.932 35 H 0.156 0.844 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.827 -11.019 -2.476 19.444 hybrid contribution 0.359 0.335 0.042 0.492 sum -15.469 -10.685 -2.435 18.957 Atomic orbital electron populations 1.21769 0.94541 1.02132 1.02276 1.21473 0.96509 0.95363 1.01963 1.20638 0.88871 0.98066 1.03564 1.20159 0.96993 0.99490 0.92629 1.21235 0.93325 1.00383 0.98678 1.21223 0.95125 1.00880 0.97343 1.20920 0.97156 0.99652 0.94376 1.20492 0.87186 0.93524 0.95458 0.91824 1.18895 0.95105 0.90350 0.94370 1.21491 0.93022 0.97310 1.42227 0.92404 1.25910 1.03269 0.95494 0.95592 1.70114 1.37176 1.03375 1.47539 0.85446 0.80110 0.78136 0.77593 1.18871 1.20668 1.20747 1.60487 1.57550 1.05502 1.07886 1.22181 0.99365 0.90086 0.99821 1.21029 0.95071 1.01000 0.97357 1.21204 0.93232 1.00486 0.98756 0.92312 0.92225 0.92202 0.92291 0.92417 0.90415 0.90229 0.84105 0.86054 0.99546 0.99024 0.93188 0.84389 0.96166 0.92610 0.90284 0.86704 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 3 C -0.07 -1.35 5.35 29.85 0.16 -1.19 16 4 C -0.09 -2.34 5.13 -19.86 -0.10 -2.44 16 5 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 6 C -0.13 -4.15 9.67 22.27 0.22 -3.94 16 7 C -0.12 -4.41 4.65 -19.87 -0.09 -4.50 16 8 C 0.14 6.15 2.17 44.17 0.10 6.24 16 9 H 0.06 2.78 7.65 -2.39 -0.02 2.76 16 10 C 0.05 2.74 4.56 29.85 0.14 2.88 16 11 C -0.50 -29.42 8.84 25.60 0.23 -29.19 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 14 N -0.94 -59.02 13.29 21.45 0.28 -58.74 16 15 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 16 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 19 N -0.68 -26.77 6.31 -518.54 -3.27 -30.04 16 20 C 0.03 1.09 10.48 127.69 1.34 2.43 16 21 C -0.13 -4.27 8.95 22.27 0.20 -4.07 16 22 C -0.12 -3.32 9.70 22.27 0.22 -3.10 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 29 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.12 3.75 7.99 -2.91 -0.02 3.73 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.34 12.29 6.77 -89.70 -0.61 11.68 16 36 H 0.02 0.59 7.93 -2.39 -0.02 0.57 16 37 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.12 3.91 6.91 -2.91 -0.02 3.89 16 40 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -67.45 329.79 3.38 -64.07 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.38 Total: 19.05 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 3.96 Total: -42.62 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -2.99 Total: -88.78 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -67.45 3.38 -64.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259466509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.969 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds