Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00030 * 2 1 4 4 H 1.09000 * 109.47064 * 177.46789 * 3 2 1 5 5 C 1.50703 * 109.46974 * 57.45909 * 3 2 1 6 6 H 1.07993 * 120.00481 * 239.99784 * 5 3 2 7 7 C 1.37883 * 119.99580 * 60.00640 * 5 3 2 8 8 N 1.31519 * 119.99919 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99819 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47215 * 90.00022 * 9 7 5 11 11 H 1.48505 * 109.46903 * 209.99711 * 9 7 5 12 12 H 1.48497 * 109.47256 * 329.99587 * 9 7 5 13 13 C 1.50700 * 109.46856 * 297.46739 * 3 2 1 14 14 C 1.38230 * 120.00074 * 148.77194 * 13 3 2 15 15 C 1.38237 * 119.99924 * 179.97438 * 14 13 3 16 16 C 1.38229 * 120.00165 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.00201 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46689 * 60.00035 * 17 16 15 19 19 C 1.52998 * 109.47182 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47030 * 299.99906 * 17 16 15 21 21 C 1.38238 * 120.00147 * 0.02562 * 16 15 14 22 22 C 1.38236 * 119.99647 * 359.97438 * 21 16 15 23 23 H 1.08998 * 109.47168 * 305.39673 * 1 2 3 24 24 H 1.08993 * 109.47617 * 65.40323 * 1 2 3 25 25 H 1.09004 * 109.47007 * 185.40370 * 1 2 3 26 26 H 1.00902 * 110.99720 * 236.04460 * 2 1 3 27 27 H 0.96994 * 119.99754 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.00220 * 0.25412 * 14 13 3 29 29 H 1.08005 * 119.99792 * 179.97438 * 15 14 13 30 30 H 1.08997 * 109.47485 * 60.00204 * 18 17 16 31 31 H 1.09005 * 109.46650 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.47090 * 299.99491 * 18 17 16 33 33 H 1.08996 * 109.47177 * 60.00290 * 19 17 16 34 34 H 1.08997 * 109.47100 * 180.02562 * 19 17 16 35 35 H 1.09004 * 109.46942 * 299.99529 * 19 17 16 36 36 H 1.09007 * 109.47191 * 59.99620 * 20 17 16 37 37 H 1.08997 * 109.46863 * 179.97438 * 20 17 16 38 38 H 1.08996 * 109.47449 * 299.99783 * 20 17 16 39 39 H 1.07995 * 119.99942 * 179.97438 * 21 16 15 40 40 H 1.07996 * 119.99678 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0841 1.3427 0.0454 5 6 1.4619 2.1143 1.1978 6 1 0.8696 3.0067 1.0600 7 6 1.7302 1.6545 2.4697 8 7 2.4513 0.5675 2.6375 9 14 1.0696 2.5756 3.9544 10 1 -0.2693 2.0422 4.3124 11 1 1.9965 2.3963 5.1008 12 1 0.9565 4.0204 3.6306 13 6 1.5636 2.0752 -1.2607 14 6 1.3442 3.4400 -1.2499 15 6 0.9486 4.0856 -2.4064 16 6 0.7729 3.3665 -3.5739 17 6 0.3411 4.0703 -4.8346 18 6 1.3782 5.1318 -5.2068 19 6 0.2225 3.0532 -5.9714 20 6 -1.0151 4.7404 -4.6056 21 6 0.9923 2.0017 -3.5847 22 6 1.3879 1.3561 -2.4281 23 1 -0.3633 0.5952 0.8377 24 1 -0.3634 0.4277 -0.9343 25 1 -0.3633 -1.0231 0.0968 26 1 1.8305 -0.5262 -0.7814 27 1 2.6397 0.2439 3.5323 28 1 1.4863 4.0026 -0.3390 29 1 0.7769 5.1518 -2.3979 30 1 2.3444 4.6544 -5.3700 31 1 1.0656 5.6411 -6.1185 32 1 1.4630 5.8565 -4.3970 33 1 -0.5161 2.2967 -5.7065 34 1 -0.0894 3.5622 -6.8833 35 1 1.1890 2.5762 -6.1344 36 1 -0.9302 5.4651 -3.7957 37 1 -1.3272 5.2498 -5.5173 38 1 -1.7539 3.9842 -4.3404 39 1 0.8546 1.4399 -4.4967 40 1 1.5589 0.2898 -2.4365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259483608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = 1.107014 kcal Electronic energy + Delta-G solvation = -18320.101738 eV Core-core repulsion = 15712.584306 eV Total energy + Delta-G solvation = -2607.517432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85611 -38.35065 -35.99734 -33.95553 -31.97766 -30.98008 -28.46278 -28.05473 -27.96466 -26.34186 -24.15004 -22.95471 -21.73501 -19.97015 -18.14349 -17.70321 -16.47564 -16.40766 -15.97849 -15.54557 -15.15354 -15.02216 -14.65762 -14.41193 -14.16561 -14.03396 -13.51962 -13.40122 -12.96584 -12.83904 -12.73230 -12.64999 -12.51318 -12.49609 -12.26921 -12.08531 -11.75471 -11.70285 -11.43827 -11.29817 -10.92192 -10.51716 -9.65129 -9.16841 -8.70464 -7.96031 -6.13565 0.62787 0.67590 1.41514 1.43300 1.51608 2.46619 3.01950 3.28208 3.75725 3.90714 4.04415 4.18319 4.25813 4.28680 4.40964 4.47206 4.68622 4.74069 4.77408 4.82562 4.91971 4.93887 4.94305 5.05554 5.06844 5.13083 5.23792 5.24809 5.30889 5.39602 5.43603 5.49186 5.52133 5.75204 5.77200 5.84703 5.88884 6.18601 6.33901 6.69278 6.92995 7.27084 7.55812 9.08071 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.005917 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.036468 B = 4730.875373 C = 5167.060222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.667 5.667 3 C 0.251 3.749 4 H 0.014 0.986 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.035 3.965 8 N -0.881 5.881 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.269 1.269 13 C -0.103 4.103 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.088 4.088 17 C -0.026 4.026 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.139 4.139 23 H 0.043 0.957 24 H 0.009 0.991 25 H 0.051 0.949 26 H 0.311 0.689 27 H 0.254 0.746 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.141 0.859 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 6.332 -16.213 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.295 5.295 3 C 0.143 3.857 4 H 0.031 0.969 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.168 4.168 8 N -0.517 5.517 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.105 4.105 14 C -0.141 4.141 15 C -0.139 4.139 16 C -0.088 4.088 17 C -0.026 4.026 18 C -0.193 4.193 19 C -0.198 4.198 20 C -0.193 4.193 21 C -0.141 4.141 22 C -0.157 4.157 23 H 0.062 0.938 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.159 0.841 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.859 6.113 -15.381 17.249 hybrid contribution -0.242 0.380 0.597 0.748 sum -5.101 6.493 -14.783 16.933 Atomic orbital electron populations 1.21765 0.89326 0.99291 0.98688 1.60666 1.06843 1.15463 1.46525 1.17991 0.93544 0.85013 0.89186 0.96887 1.21218 1.34662 1.10439 0.90856 0.92661 1.25629 0.94967 0.95211 1.01022 1.70226 1.37574 1.22290 1.21602 0.85865 0.78142 0.79403 0.79987 1.20619 1.21101 1.19371 1.21271 0.97347 0.95201 0.96673 1.21214 0.99973 0.94736 0.98201 1.21116 1.00525 0.99986 0.92274 1.19989 1.00002 0.93557 0.95222 1.19508 0.96038 0.95554 0.91482 1.21870 0.97911 0.97650 1.01824 1.21934 1.01898 0.98527 0.97421 1.21870 0.95125 1.00080 1.02217 1.21276 1.00327 0.94615 0.97891 1.21073 1.02026 0.99715 0.92889 0.93850 0.97289 0.93026 0.87206 0.93720 0.87171 0.85353 0.93196 0.90640 0.92901 0.92573 0.90823 0.92397 0.92951 0.90598 0.93422 0.84112 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.63 9.99 127.69 1.28 3.90 16 2 N -0.67 -32.09 5.94 -522.48 -3.11 -35.20 16 3 C 0.25 12.77 2.82 43.42 0.12 12.90 16 4 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 5 C -0.53 -29.23 6.39 25.60 0.16 -29.07 16 6 H 0.06 3.01 5.96 -2.91 -0.02 2.99 16 7 C 0.04 1.96 5.39 84.66 0.46 2.41 16 8 N -0.88 -51.95 12.77 21.45 0.27 -51.67 16 9 Si 0.94 44.07 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C -0.10 -4.45 4.75 -19.87 -0.09 -4.54 16 14 C -0.12 -5.01 8.89 22.27 0.20 -4.81 16 15 C -0.12 -3.99 8.71 22.27 0.19 -3.80 16 16 C -0.09 -2.54 4.76 -19.86 -0.09 -2.64 16 17 C -0.03 -0.55 0.85 -52.93 -0.05 -0.59 16 18 C -0.14 -2.57 8.29 71.98 0.60 -1.98 16 19 C -0.14 -2.51 7.13 71.98 0.51 -1.99 16 20 C -0.14 -2.65 8.29 71.98 0.60 -2.05 16 21 C -0.12 -3.78 8.98 22.27 0.20 -3.58 16 22 C -0.14 -5.10 7.96 22.27 0.18 -4.93 16 23 H 0.04 2.16 6.82 -2.39 -0.02 2.14 16 24 H 0.01 0.37 6.41 -2.39 -0.02 0.35 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.31 13.36 7.14 -89.69 -0.64 12.72 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.11 4.82 6.36 -2.91 -0.02 4.80 16 29 H 0.13 3.63 7.10 -2.91 -0.02 3.61 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.04 7.39 -2.38 -0.02 1.03 16 33 H 0.06 1.02 7.51 -2.39 -0.02 1.01 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.04 7.52 -2.38 -0.02 1.02 16 36 H 0.05 1.06 7.39 -2.38 -0.02 1.05 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.14 3.51 5.90 -2.91 -0.02 3.49 16 40 H 0.11 4.00 6.44 -2.91 -0.02 3.99 16 Total: -1.00 -61.91 309.99 3.83 -58.08 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.38 Total: 23.46 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 4.26 Total: -40.77 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.83 Total: -86.87 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -61.91 3.83 -58.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.185 kcal (2) G-P(sol) polarization free energy of solvation -61.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds