Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99782 * 2 1 4 4 H 1.08998 * 109.47283 * 33.89557 * 3 2 1 5 5 C 1.50701 * 109.46770 * 153.88932 * 3 2 1 6 6 H 1.08002 * 119.99755 * 119.72830 * 5 3 2 7 7 C 1.37882 * 120.00348 * 300.00057 * 5 3 2 8 8 N 1.31513 * 120.00053 * 179.72693 * 7 5 3 9 9 Si 1.86801 * 119.99596 * 359.72619 * 7 5 3 10 10 H 1.48498 * 109.47191 * 89.99928 * 9 7 5 11 11 H 1.48500 * 109.47016 * 209.99840 * 9 7 5 12 12 H 1.48502 * 109.47406 * 329.99549 * 9 7 5 13 13 C 1.50698 * 109.47300 * 273.89139 * 3 2 1 14 14 C 1.38228 * 119.99857 * 314.50680 * 13 3 2 15 15 C 1.38240 * 119.99842 * 179.79140 * 14 13 3 16 16 C 1.38230 * 120.00032 * 0.43845 * 15 14 13 17 17 C 1.50700 * 120.00407 * 179.83538 * 16 15 14 18 18 C 1.52999 * 109.47294 * 239.98058 * 17 16 15 19 19 C 1.53001 * 109.46918 * 359.97438 * 17 16 15 20 20 C 1.52996 * 109.47045 * 119.97551 * 17 16 15 21 21 C 1.38241 * 119.99854 * 359.81737 * 16 15 14 22 22 C 1.38232 * 120.00198 * 359.97438 * 21 16 15 23 23 H 1.08995 * 109.47258 * 305.00295 * 1 2 3 24 24 H 1.08998 * 109.46977 * 65.00090 * 1 2 3 25 25 H 1.08995 * 109.47106 * 184.99937 * 1 2 3 26 26 H 1.00901 * 110.99747 * 123.95581 * 2 1 3 27 27 H 0.96998 * 119.99813 * 179.97438 * 8 7 5 28 28 H 1.07998 * 120.00189 * 359.97438 * 14 13 3 29 29 H 1.08001 * 119.99669 * 180.27577 * 15 14 13 30 30 H 1.08999 * 109.46857 * 60.00052 * 18 17 16 31 31 H 1.09004 * 109.46646 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47206 * 299.99857 * 18 17 16 33 33 H 1.08997 * 109.47215 * 59.99275 * 19 17 16 34 34 H 1.08994 * 109.47614 * 180.02562 * 19 17 16 35 35 H 1.09011 * 109.46879 * 300.00086 * 19 17 16 36 36 H 1.09003 * 109.46878 * 60.00718 * 20 17 16 37 37 H 1.09004 * 109.47261 * 180.02562 * 20 17 16 38 38 H 1.09003 * 109.47673 * 300.00331 * 20 17 16 39 39 H 1.08003 * 119.99637 * 179.97438 * 21 16 15 40 40 H 1.07997 * 120.00099 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3293 2.0163 0.5731 5 6 3.3666 1.3832 0.6253 6 1 4.2187 1.7173 0.0520 7 6 3.5341 0.9620 1.9275 8 7 4.7314 0.9672 2.4714 9 14 2.0602 0.3842 2.9191 10 1 1.8798 -1.0778 2.7316 11 1 2.2869 0.6745 4.3577 12 1 0.8421 1.0967 2.4565 13 6 2.0855 1.8750 -1.4175 14 6 2.6207 1.0689 -2.4046 15 6 2.6993 1.5292 -3.7058 16 6 2.2510 2.7990 -4.0180 17 6 2.3400 3.3022 -5.4356 18 6 3.2128 4.5582 -5.4771 19 6 2.9602 2.2208 -6.3227 20 6 0.9376 3.6385 -5.9465 21 6 1.7205 3.6071 -3.0297 22 6 1.6380 3.1452 -1.7294 23 1 -0.3633 0.5895 0.8417 24 1 -0.3633 0.4343 -0.9314 25 1 -0.3633 -1.0237 0.0896 26 1 1.8306 -0.5262 0.7814 27 1 4.8492 0.6713 3.3877 28 1 2.9748 0.0784 -2.1599 29 1 3.1134 0.8977 -4.4778 30 1 4.2119 4.3185 -5.1133 31 1 3.2775 4.9219 -6.5027 32 1 2.7711 5.3286 -4.8452 33 1 2.3386 1.3260 -6.2930 34 1 3.0251 2.5849 -7.3480 35 1 3.9594 1.9812 -5.9586 36 1 0.4959 4.4090 -5.3145 37 1 1.0019 4.0021 -6.9720 38 1 0.3158 2.7437 -5.9169 39 1 1.3706 4.5993 -3.2736 40 1 1.2232 3.7764 -0.9575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259483611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = 14.310913 kcal Electronic energy + Delta-G solvation = -18214.451278 eV Core-core repulsion = 15607.506410 eV Total energy + Delta-G solvation = -2606.944868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39895 -36.87929 -34.89082 -32.27211 -30.44453 -29.98217 -27.20544 -27.15688 -27.15147 -23.68034 -23.07982 -21.59413 -20.28398 -18.69224 -16.85910 -16.12546 -15.57590 -14.76958 -14.38453 -14.12190 -13.74268 -13.57096 -13.47457 -13.11147 -12.86558 -12.65811 -12.49305 -12.39711 -11.83748 -11.73870 -11.59293 -11.30323 -11.12204 -10.96722 -10.91759 -10.75273 -10.61768 -10.08959 -10.02578 -9.70890 -9.38365 -8.78132 -8.17268 -7.67628 -7.57615 -6.22054 -4.23977 2.11899 2.17217 3.10329 3.20273 3.24407 4.21083 4.49640 4.84039 4.93425 4.96050 5.15139 5.46832 5.50270 5.61301 5.64860 5.68125 5.68277 5.84154 5.89844 5.93928 5.94845 5.99755 6.09809 6.12918 6.14525 6.23105 6.36130 6.39905 6.41652 6.50062 6.64788 6.76927 6.86865 7.18789 7.27231 7.35514 7.54380 7.78128 8.13033 8.23178 8.50896 8.85384 9.35364 10.89868 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.005809 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.801845 B = 4819.199961 C = 5070.483900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.689 5.689 3 C 0.210 3.790 4 H 0.013 0.987 5 C -0.506 4.506 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.888 5.888 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 C -0.028 4.028 14 C -0.084 4.084 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.025 4.025 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.126 4.126 23 H 0.014 0.986 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.333 0.667 27 H 0.267 0.733 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 3.239 -13.311 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.326 5.326 3 C 0.103 3.897 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.525 5.525 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.189 1.189 13 C -0.029 4.029 14 C -0.102 4.102 15 C -0.149 4.149 16 C -0.096 4.096 17 C -0.025 4.025 18 C -0.194 4.194 19 C -0.198 4.198 20 C -0.193 4.193 21 C -0.141 4.141 22 C -0.145 4.145 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.156 0.844 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.824 3.124 -13.807 15.715 hybrid contribution -0.863 -0.081 1.697 1.905 sum -7.687 3.043 -12.110 14.663 Atomic orbital electron populations 1.22281 0.90841 0.99986 0.99955 1.60972 1.05005 1.17086 1.49509 1.18664 0.96120 0.85489 0.89404 0.96931 1.21049 0.92332 1.43768 0.97292 0.90005 1.25031 0.95543 0.95021 0.97378 1.69864 1.21351 1.46717 1.14574 0.87174 0.83917 0.79519 0.80005 1.19916 1.21514 1.18863 1.20061 0.93935 0.92777 0.96114 1.21005 0.97501 1.00203 0.91510 1.21103 1.01533 0.95571 0.96715 1.19527 1.01312 0.94767 0.93978 1.19400 0.95503 0.95419 0.92193 1.21875 0.99853 0.96681 1.00984 1.21934 1.00965 0.98410 0.98538 1.21868 0.95793 1.01476 1.00146 1.20706 1.01582 0.98910 0.92896 1.20989 1.01493 0.96241 0.95769 0.96754 0.92367 0.92965 0.84396 0.92303 0.85677 0.86741 0.92479 0.92990 0.92579 0.92380 0.93012 0.92255 0.92622 0.92979 0.92678 0.87418 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.09 60.07 0.61 0.97 16 2 N -0.69 -15.33 5.72 -116.50 -0.67 -15.99 16 3 C 0.21 5.00 1.60 -70.02 -0.11 4.89 16 4 H 0.01 0.32 6.56 -51.93 -0.34 -0.02 16 5 C -0.51 -14.04 9.19 -34.44 -0.32 -14.35 16 6 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 7 C 0.07 2.07 5.39 -17.82 -0.10 1.98 16 8 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 9 Si 0.87 20.74 24.43 -169.99 -4.15 16.59 16 10 H -0.27 -6.28 6.93 56.52 0.39 -5.89 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.13 5.38 56.52 0.30 -5.83 16 13 C -0.03 -0.60 4.76 -104.63 -0.50 -1.10 16 14 C -0.08 -1.69 9.27 -39.58 -0.37 -2.06 16 15 C -0.13 -2.26 8.98 -39.58 -0.36 -2.61 16 16 C -0.10 -1.52 4.76 -104.62 -0.50 -2.01 16 17 C -0.03 -0.31 0.85 -155.66 -0.13 -0.45 16 18 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 19 C -0.14 -1.59 7.13 37.16 0.27 -1.33 16 20 C -0.14 -1.51 8.29 37.16 0.31 -1.20 16 21 C -0.12 -2.05 8.71 -39.58 -0.34 -2.39 16 22 C -0.13 -2.43 9.67 -39.58 -0.38 -2.82 16 23 H 0.01 0.27 6.72 -51.93 -0.35 -0.08 16 24 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.33 7.77 4.66 -39.29 -0.18 7.59 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.13 2.62 7.89 -52.49 -0.41 2.21 16 29 H 0.11 1.72 5.90 -52.49 -0.31 1.41 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.65 7.39 -51.93 -0.38 0.26 16 33 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.69 7.52 -51.92 -0.39 0.30 16 36 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.11 1.54 7.10 -52.48 -0.37 1.17 16 40 H 0.11 2.03 8.00 -52.49 -0.42 1.61 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -28.99 310.40 -7.54 -36.53 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.56 Total: 7.65 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -1.62 Total: -23.76 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.11 Total: -41.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.15 Total: 16.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.99 -7.54 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259483611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.842 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds